BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26400.2
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492175 jgi|Araly1|492175|fgenesh2_kg.7__1608__AT4G26400.2 2067 0.0
Ahg495725 jgi|Araly1|495725|fgenesh2_kg.8__1541__AT5G56340.1 327 1e-88
Ahg359584 jgi|Araly1|359584|fgenesh1_pg.C_scaffold_419000001 322 4e-87
> Ahg492175 jgi|Araly1|492175|fgenesh2_kg.7__1608__AT4G26400.2
Length=1366
Score = 2067 bits (1119), Expect = 0.0
Identities = 1295/1378 (94%), Gaps = 19/1378 (1%)
Strand=Plus/Plus
Query 15 tcttcgtcttcatcttcgtcttcctttcctccttcattcctcttttcttcgtctcccacc 74
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 TCTTCGTCTTCGTCTTCGTCTTCCTTTCCTCCTTCATTCCTCTTTTCTTCTTCTCCCACC 60
Query 75 atttctGCAGAAGAAGACAAATAAAAAAGCTCTCATTTATCTTCGTGGAGATCTAAAAGA 134
|||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |
Sbjct 61 ATTTCTGCAGAAGAAGACAAAT-AAAGAGCTCTCATTTATCTTGGTGGAGATCTAAAAAA 119
Query 135 A-GGAGGAAGACATTTCTTCCCTCTGGATCTCCaaaaaaaCGAGAGGTTTGGGTGGGGAA 193
| ||| |||||||||| || ||||||||||||| ||||||||||| ||| |||||||||
Sbjct 120 AGGGA-GAAGACATTTTTTTCCTCTGGATCTCCTAAAAAACGAGATATTTAGGTGGGGAA 178
Query 194 GGAAAGAAGGAGGAAGAGGCAATGTCAGCTAGGTATTGGTGTCACATGTGTTCACAAATG 253
|| |||||||| | |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 179 GG---GAAGGAGGGATAGGCAATGGCAGCTAGGTATTGGTGTCATATGTGTTCACAAATG 235
Query 254 GTGAATCCAGTTATTGGTGCCGAGATCAAATGCCCCTTTTGCCAAAGCGGGTTTGTCGAG 313
||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 236 GTGAATCCAATTATTGATGCCGAGATCAAATGCCCCTTTTGCCAGAGCGGGTTTGTCGAG 295
Query 314 GAAATGAGCCGTGAGATTAATGGCGGCAGCAGTAGCAGTCTAAGGGAGGTTCAAGACCCT 373
|||||||||| |||||||| |||||||||||| || |||||||||||||||||||||||
Sbjct 296 GAAATGAGCCTTGAGATTAGTGGCGGCAGCAGCAGTAGTCTAAGGGAGGTTCAAGACCCA 355
Query 374 GAGATTGATTTTGGTACAGACCGTGCATTGTCTCTATGGGGTCCAATCTTGCTTGGAATG 433
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 356 GAGATCGATTTTGGTACAGACCGTGCATTGTCTCTATGGGGTCCAATTTTGCTTGGAATG 415
Query 434 ATGAGTAATCCTCGTAGACGTAGAAGGTTTAGGAGGACAGAGTTTGGTGTGGATAATGAT 493
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATGAGTAATCCTCGGAGACGTAGAAGGTTTAGGAGGACAGAGTTTGGTGTGGATAATGAT 475
Query 494 GAGGTCAAT-GTATCTGATGATGTTGATGGAAATGACAGC---GTCGATATTGATCGACA 549
||||||||| || | || || ||||||||||||||||||| || |||| |||||||||
Sbjct 476 GAGGTCAATGGTGT-TGCTGTTGTTGATGGAAATGACAGCAATGTAGATACTGATCGACA 534
Query 550 TCATCATCGTCGTCATCGCCACAGGCAACAAGGTAGAGAGATTGATTTAGACAGAGAGTT 609
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TCATCATCTTCGTCATCGCCACAGGCAACAAGGTAGAGAGATTGATTTAGACAGAGAGTT 594
Query 610 TGAGTCTATCCTTAGGAGGAGACGGAGAAGCTCAGCTACTATATTGCAGTTGCTTCAGGG 669
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 595 TGAGTCTATCCTTAGGAGGAGACGGAGAAGCTCAGCTTCCATATTGCAGTTGCTTCAGGG 654
Query 670 TATTCGTGCAGGGATTGCTTCTGAGTATGAGAGCTCGGATCGAGACCTGTTAAATCAATC 729
|||||||||||||||||||| ||||||||||| ||||| ||||||| ||| ||||||||
Sbjct 655 GATTCGTGCAGGGATTGCTTCCGAGTATGAGAGTTCGGACCGAGACCAGTTTAATCAATC 714
Query 730 AGCTGTTGTTCAGGGTTCAACGAGTTTGAATCAAAACCGGAACAATACTTCTCTTTCTGC 789
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 715 AGCTGTTGTTCAGGGATCGACTAGTTTGAATCAAAACCGGAACAATACTTCTCTTTCTGC 774
Query 790 AATTGGAGATTACTTTGTTGGATCCAGTTTAGACCATTTGCTTGAACATCTAGCTGATAA 849
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 775 AATTGGAGATTACTTTGTTGGACCCAGTTTAGACCACTTGCTTGAACATCTAGCTGATAA 834
Query 850 TGATTCAATCAGGCACGGGAGTCTTCCAGCACGTAAAGAAGTTGTGGATAATCTCCCAAC 909
||||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 835 CGATTCAACCAGGCACGGGAGTCTTCCAGCACGGAAAGAAGCCGTGGAAAATCTCCCAAC 894
Query 910 GGTTAAGATAAGTGAATCATTGCAGTGCTCGATTTGTTTGGATGATTTTGACAAAGGAAG 969
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GGTTAAGATATGTGAATCATTGCAGTGCTCGATTTGTTTGGATGATTTTGACAAAGGAAG 954
Query 970 TGAAGCTAAAGAGATGCCGTGTAAGCACAAGTTTCACATCCGGTGTATAGTACCGTGGCT 1029
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 955 TGAAGCTAAAGAGATGCCGTGTAAGCACAAGTTTCACATCCGGTGTATAGTACCATGGCT 1014
Query 1030 CGAGCTTCACAGTTCATGTCCCGTGTGCCGATATGAACTCCCTCCTGATGATGAGACCAA 1089
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TGAGCTTCACAGTTCGTGTCCCGTGTGCCGATATGAACTCCCTCCTGATGATGAGACCAA 1074
Query 1090 GGTTAATCCTGTAAGACCGAGAACAAGAACTCTAGAGATCAACGTAAGTAATGAGAATGT 1149
|||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1075 GGTTGATCCGGTAAGACCGAGAACAAGAACTCTAGAGATCAACATAAGTAATGAGAATGT 1134
Query 1150 GGAAGATGATGCAAGGAACAGTAATGTGAGCGAGAGAAGGTTCTCTTTTCCATGGCCGTT 1209
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1135 GGAAGATGATGCAAGGAACAGTAATGTGAGCGAGAGAAGGTTCTCTTTTCCGTGGCCATT 1194
Query 1210 CAGCGGATTATTCTCTTCATCCTCTTCGTCATCCGCATCGGCCTCGGGGTCATCTCATCT 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 CAGCGGATTATTCTCTTCATCCTCTTCGTCATCCGCATCGGCCTCGGGGTCATCTCATCT 1254
Query 1270 CGGTGAGAACTCGTAAACTGCTATTCCTCAGCTTATA--GTACATAAAATCTTGTTCACT 1327
|||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1255 CGGTGAGAACTCATAATCTGCTATTCCTCAGCTTATATAGTACATAAAATCTTGTTCACT 1314
Query 1328 CAGATTGTTGAATACTGCATAACAAATAAACACTTTCGAGGAATGGAATCTTTTCTTT 1385
|||||||||||||| | | |||||||||||||| |||||||||||||||| ||||
Sbjct 1315 CAGATTGTTGAATA-T--A---CAAATAAACACTTTGGAGGAATGGAATCTTTCCTTT 1366
> Ahg495725 jgi|Araly1|495725|fgenesh2_kg.8__1541__AT5G56340.1
Length=1571
Score = 327 bits (177), Expect = 1e-88
Identities = 423/536 (79%), Gaps = 39/536 (7%)
Strand=Plus/Plus
Query 193 AGGAAAGA-A-GGAGGAAGAGGCAATGTCAGCTAGGTATTGGTGTCACATGTGTTCACAA 250
|||| ||| | ||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 216 AGGATAGATATGGAGGAA-A--CAATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAA 272
Query 251 ATGGTGAATCCAGTTATTGGTGCC-GAGATCAAATGCCCCTTTTGCCAAAGCGGGTTTGT 309
|||||||||||| | || || | ||||||||||| |||||||| |||||||| || |
Sbjct 273 ATGGTGAATCCAATAAT-GGAATCTGAGATCAAATGTCCCTTTTGTCAAAGCGGATTCAT 331
Query 310 CGAGGAAATGAGCCGTGAGATTAATGGCGGCAGCAG-TAGCAGT--C-TAAGGGAGGTTC 365
||| ||||||||| || | || | || || || | | |||| | |||| || ||||
Sbjct 332 CGAAGAAATGAGCGGT-A-AT-AGCGGTGG-AGGTGGTGGCAGAGGCATAAGAGACGTTC 387
Query 366 AAGACCCTGAGATTGATTTTGGTACAGACCGTGCATTGTCTCTATGGGGTCCAATCTTGC 425
|||| | || | |||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 388 AAGATTCAGAAACCGATTTTGGAACAGACCGTGCATTGTCTCTATGGGCACCAATCTTGC 447
Query 426 TTGGAATGATGAGTAATCCTCGTAGACGTAGAAGGTTTAGGAGGA-CAGAGTTTGGTGTG 484
||||||||||||||| |||||| ||||| ||||||||||| || | ||||||||||||
Sbjct 448 TTGGAATGATGAGTAGTCCTCGGAGACGAAGAAGGTTTAGAAG-ATCAGAGTTTGGTGAA 506
Query 485 GATAATGATGA----GGTCAATGTATCTGA-TGATGTTGATGGAAATGACAGCGTCGATA 539
|| |||||||| ||| | || || ||| | ||| |||||| ||||| | | |||
Sbjct 507 GAGAATGATGATAATGGTGA-TGAAT-TGAGTAATGCTGATGGGAATGATAA--TA-ATA 561
Query 540 TTGATC-G-ACATCA-TCATCGTCGTCATCGC-CACAGGCAACAAGGTAGAGAGATTGAT 595
| | | | | || | || || |||||| | |||| || ||| |||||||||||
Sbjct 562 ATAA-CAGTA-ATGTGT-ATTATCATCATCGAGCT-AGGCGGCATGGTGGAGAGATTGAT 617
Query 596 TTAGACAGAGAGTTTGAGTCTATCCTT-AGGAGGAGACGGAGAAGCTCAGCTACTATATT 654
|| || |||||||||||||||||| || ||| | ||||| |||||||| | | ||||||
Sbjct 618 TTGGATAGAGAGTTTGAGTCTATC-TTGAGGCGAAGACGAAGAAGCTCGGGGAATATATT 676
Query 655 GCAGTTGCTTCA-GGGTATTCGTGCAGGGATTGCTTCTGAGTATGAGAGCTCGGAT 709
|||||| ||||| ||| |||||||||||||||||||| |||||||| || || |||
Sbjct 677 GCAGTTACTTCAAGGG-ATTCGTGCAGGGATTGCTTCAGAGTATGAAAGTTCTGAT 731
> Ahg359584 jgi|Araly1|359584|fgenesh1_pg.C_scaffold_419000001
Length=649
Score = 322 bits (174), Expect = 4e-87
Identities = 403/510 (79%), Gaps = 30/510 (6%)
Strand=Plus/Plus
Query 215 ATGTCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAGTTATTGGTGCC 274
||| |||||||||||||||||||||||||||||||||||||||||||| | || || |
Sbjct 1 ATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAATAAT-GGAATC 59
Query 275 -GAGATCAAATGCCCCTTTTGCCAAAGCGGGTTTGTCGAGGAAATGAGCCGTGAGATTAA 333
||||||||||| |||||||| |||||||| || |||| |||||||| || | |
Sbjct 60 TGAGATCAAATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATGAGTGGTAATAGCGG 119
Query 334 TGGCGGCAGCAG-TAGCAGTC-TAAGGGAGGTTCAAGACCCTGAGATTGATTTTGGTACA 391
||| || | || ||| || | |||| || |||||||| | || | |||||||| |||
Sbjct 120 TGGAGGTGG-AGGTAG-AGGCATAAGAGATGTTCAAGATTCAGAAACCGATTTTGGAACA 177
Query 392 GACCGTGCATTGTCTCTATGGGGTCCAATCTTGCTTGGAATGATGAGTAATCCTCGTAGA 451
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||
Sbjct 178 GACCGTGCATTGTCTCTATGGGCACCAATCTTGCTTGGAATGATGAGTAGTCCTCGGAGA 237
Query 452 CGTAGAAGGTTTAGGAGGA-CAGAGTTTGGTGTGGATAATGATGA----GGTCAATGTAT 506
|| ||||||||||| || | |||||||||||| || |||||||| ||| | || ||
Sbjct 238 CGAAGAAGGTTTAGAAG-ATCAGAGTTTGGTGAAGAGAATGATGATAATGGTGA-TGAAT 295
Query 507 CTGA-TGATGTTGATGGAAATGACAGCGTCGATATTGATC-G-ACATCA-TCATCGTCGT 562
||| | ||| |||||| ||||| | | ||| | | | | | || | || || |
Sbjct 296 -TGAGTAATGCTGATGGGAATGATAA--TA-ATAATAA-CAGTA-ATGTGT-ATTATCAT 348
Query 563 CATCGC-CACAGGCAACAAGGTAGAGAGATTGATTTAGACAGAGAGTTTGAGTCTATCCT 621
||||| | |||| || ||| ||||||||||||| || |||||||||||||||||| |
Sbjct 349 CATCGAGCT-AGGCGGCATGGTGGAGAGATTGATTTGGATAGAGAGTTTGAGTCTATC-T 406
Query 622 T-AGGAGGAGACGGAGAAGCTCAGCTACTATATTGCAGTTGCTTCA-GGGTATTCGTGCA 679
| ||| | ||||| |||||||| | | |||||||||||| ||||| ||| |||||||||
Sbjct 407 TGAGGCGAAGACGAAGAAGCTCGGGGAATATATTGCAGTTACTTCAAGGG-ATTCGTGCA 465
Query 680 GGGATTGCTTCTGAGTATGAGAGCTCGGAT 709
||||||||||| |||||||| || || |||
Sbjct 466 GGGATTGCTTCAGAGTATGAAAGTTCTGAT 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51955094180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5