BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26420.1
Length=1312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889514 jgi|Araly1|889514|Al_scaffold_0007_1500 1698 0.0
> Ahg889514 jgi|Araly1|889514|Al_scaffold_0007_1500
Length=1944
Score = 1698 bits (919), Expect = 0.0
Identities = 1064/1134 (94%), Gaps = 9/1134 (1%)
Strand=Plus/Plus
Query 83 ATGGAGTCGTCACGGAGCCTCGAGCACGTGCTCTCCATGCAAGGTGGCGAGGATGACGCG 142
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTCGTCACAGAGCCTCGAGCACGTGCTCTCCATGCAAGGTGGCGAGGATGACGCC 60
Query 143 AGCTACGTCAAAAACTGTTACGGTCCAGCGGCACG-TTTAGCCTTGAGCAAACCAATGCT 201
|||||||||||||||||||||||||| || ||| | ||||||||||||||||||||||||
Sbjct 61 AGCTACGTCAAAAACTGTTACGGTCCTGCCGCA-GCTTTAGCCTTGAGCAAACCAATGCT 119
Query 202 GACGACAGCCATCAACTCCATAAAGCTCACCGAAGGTTGCTCCTCTCACCTGAAAATAGC 261
|||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 GACGTCAGCCATCAATTCCATAAAGCTCACCGAAGGTTACTCCTCTCACCTGAAAATAGC 179
Query 262 CGATTTAGGTTGCGCAATCGGAGACAACACGTTTTCCACGGTGGAAACGGTGGTTGAGGT 321
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 AGATTTAGGCTGCGCAATCGGAGACAACACGTTTTCCACGGTGGACACGGTGGTTGAGGT 239
Query 322 GTTAGGGAAGAAGCTAGCCGTGATTGACGGTGGAACCGAGCCGGAGATGGAGTTCGAGGT 381
|||| || ||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 GTTACGGCAGAAGCTTGCCGTGATTGACGGTGGAACCGAGCCGGAGACGGAGTTCGAGGT 299
Query 382 CTTCTTCTCTGACTTGTCTTCCAACGATTTCAACGCGTTGTTTCGGTCGTTGGATGAGAA 441
|||||||||||||||| |||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 300 CTTCTTCTCTGACTTGCCTTCCAACGACTTCAACACGTTGTTTCGGTCGTTAGATGAGAA 359
Query 442 AGTGAACGGTTCGAGCCGAAAGTACTTCGCGGCTGGCGTTCCCGGCTCGTTCTATAAGCG 501
|||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||
Sbjct 360 AGTGAACGGTTCGAGCCGGAAGTACTTCGGGGCTGGCGTTCCCGGCTCTTTCTATAAACG 419
Query 502 TCTGTTTCCGAAAGGAGAGCTCCATGTCGTTGTGACTATGTCTGCTTTACAATGGCTCTC 561
|||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||
Sbjct 420 TCTGTTTCCGAAAGGAGAGCTCCATGTCGTTGTGGCTATGACCGCTTTACAGTGGCTCTC 479
Query 562 TCAGGTACCTGAAAAAGTGATGGAGAAAGGATCGAAGTCATGGAACAAGGGAGGGGTGTG 621
|||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 480 TCAGATACCCGAAAAAGTGATGGAGAAAGGATCGAAGTCATGGAACAAGGGAAGGGTGTG 539
Query 622 GATTGAAGGAGCAGAAAAAGAAGTCGTGGAGGCATACGCGGAGCAAGCAGACAAGGACTT 681
||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 540 GATTGAAGGAGCAGAGAAAGAAGTCGTGGAGGCATACACGGAGCAATCAGACAAGGACTT 599
Query 682 AGTCGAGTTCTTGAAATGTCGCAAAGAGGAGATTGTGGTAGGAGGAGTGTTGTTTATGCT 741
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 600 AGTCGAGTTCTTGAAATGTCGCAAAGAGGAGATTGTGGTAGGAGGAGTGTTGTTTATGTT 659
Query 742 GATGGGTGGTCGACCTTCTGGCTCCGTGAACCAAATCGGTGATCCTGATTCGAGTCTCAA 801
||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||
Sbjct 660 GATGGGTGGTCGACCTTCTGGGTCAATGAGCCAAATCAGTGATCCTGATTCGAGTCTCAA 719
Query 802 ACACCCTTTCACAACTTTGATGGATCAAGCTTGGCAAGATCTAGTAGATGAGGGTTTAAT 861
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 720 ACACCCTTTCACAACTTTGATGGATCAAGCTTGGCAAGATCTAGTAGATGAGGTTTTGAT 779
Query 862 AGAAGAGGAGAAGAGAGATGGTTTCAACATTCCGGTGTACTTTAGAACCACCGAAGAGAT 921
|||||||||||| |||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 780 AGAAGAGGAGAAAAGAGATAGTTTCAACATTCCGGTGTACTTTAGAACCACGGAGGAGAT 839
Query 922 TGCGGCGGCGATTGATCGTTGTGGTGGTTTTAAGATAGAGAAAACGGAGAATCTGATAA- 980
|| ||||||||||||||||||||||| || ||| ||||||||| ||||||||||| ||
Sbjct 840 AGCTGCGGCGATTGATCGTTGTGGTGGCTTCAAGGTAGAGAAAATGGAGAATCTGA-AAG 898
Query 981 TAGCTGACCACATGAATGGTAAGCAGGAAGAGTTGATGAAAGATCCGGATTCGTACGGTC 1040
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 899 TAGCTGACCACATGAATGGTAAGCAGGAAGAGTTGATGAAAGATCCGGATTTGTACGGTC 958
Query 1041 GAGATAGGGCTAACTATGCTCAAGCCGGTTTAAAGCCGATCG-TTCAGGCCTATCTTGGT 1099
||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||
Sbjct 959 GAGATAGGGCTAACTATGCTCAAACCGGTTTAAAGCCGA-CGGTTCAGGCCTATCTCGGT 1017
Query 1100 CCTGACCTAACTCATAAGCTCTTCAAACGGTACGCAGTTAGAGCAGCTGCCGACAAAGAA 1159
|||||||| || | |||||||||||||| ||||||| || |||| |||||||||||||||
Sbjct 1018 CCTGACCTGACCCGTAAGCTCTTCAAACAGTACGCAATTCGAGCTGCTGCCGACAAAGAA 1077
Query 1160 ATTCTCAACAAC--T-GTTTCTATCATATGATCGCTGTTTCAGCGGTTAGGGTT 1210
||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATTCTCAACAAGAATTGTTTCTATCATATGATCGCTGTTTCAGCGGTTAGGGTT 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49064194179
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5