BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26430.1
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492170 jgi|Araly1|492170|fgenesh2_kg.7__1603__AT4G26430.1 1849 0.0
Ahg495718 jgi|Araly1|495718|fgenesh2_kg.8__1534__AT5G56280.1 994 0.0
> Ahg492170 jgi|Araly1|492170|fgenesh2_kg.7__1603__AT4G26430.1
Length=1379
Score = 1849 bits (1001), Expect = 0.0
Identities = 1272/1392 (91%), Gaps = 62/1392 (4%)
Strand=Plus/Plus
Query 99 TATGGGCTAAACTTA-GAAGGAAAGCCCAAGAGGCCAAGACTATATAAAGATTCATGACC 157
||||||||| ||||| ||| |||||||| | | | | ||||||||||||||||| |||
Sbjct 27 TATGGGCTACACTTAGGAA-GAAAGCCC-A-A---C-A-ACTATATAAAGATTCAT-ACC 77
Query 158 CGAGTTTAAGATCCGATTTCAGAATTTGGGACTAAAGGAGGAC-AACGACAAGCGCCGGG 216
||| ||||||||||||||| |||||||||||||||||| ||| | | ||||||||||||
Sbjct 78 CGACTTTAAGATCCGATTTGGGAATTTGGGACTAAAGGA-GACGATC-ACAAGCGCCGGG 135
Query 217 AAAAAATCGAGAGCGACAACAATGGCGCCTTCTTCGTCGAGCGGTCTCACGTTCAAGCTA 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 AAAAAATCGAGAGCGACAACAATGGCGCCTTCTTCGTCGAGCGGTCTCACGTTCAAGCTA 195
Query 277 CATCCTCTGGTGATGCTTAACATATCCGATCACTTCACTAGGGTTAAAACTCAGCTTAAT 336
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 196 CATCCTCTGGTGATGCTTAACATATCCGATCACTTCACTAGGGTTAAAACTCAGCTTAGT 255
Query 337 CCTCCCGCCGCTTCTTGCGCCACCGGGAATGGCTCCAACAACGCCGACGCGATGTTACTG 396
||||||||||||||||||||||||||||||||||||| |||||||||||||| | | |||
Sbjct 256 CCTCCCGCCGCTTCTTGCGCCACCGGGAATGGCTCCAGCAACGCCGACGCGACGGTCCTG 315
Query 397 CAAAACCCTAGGGTTTATGGCTGCGTCATCGGTCTCCAGAGAGGTCGTACGGTTGAGATC 456
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 316 CAAAACCCTAGGGTTTATGGCTGCGTGATCGGTCTCCAGAGAGGTCGTACGGTTGAGATC 375
Query 457 TTCAACAGTTTCGAGCTGA-T-ATTCGATCCTGCT-CTTGATACTCTCGACAGATCCTTC 513
||||||||||||||||| | | | |||||||| || | ||||||||||||||||||||||
Sbjct 376 TTCAACAGTTTCGAGCT-ATTGA-TCGATCCTACTAC-TGATACTCTCGACAGATCCTTC 432
Query 514 CTCGAGAAGAAGCAAGAACTCTATAAGAAGGTGTTCCCTGACTTCTACGTATTGGGATGG 573
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 433 CTCGAGAAGAAGCAAGAACTCTACAAGAAGGTGTTCCCTGACTTCTACATATTGGGATGG 492
Query 574 TATTCTACGGGAAGTGACGCTACCGAATCTGATATGCATATCCACAAAGCTCTGATGGAC 633
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 493 TATTCGACGGGAAGCGACGCTACGGAATCTGATATGCATATCCACAAAGCTCTGATGGAC 552
Query 634 ATTAATGAATCTCCTGTGTATGTTCTTTTAAATCCTGCTATCAATCATGCACAGAAGGAT 693
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 553 ATTAATGAATCTCCTGTGTATGTTCTTCTAAATCCTGCTATCAATCATGCACAGAAGGAT 612
Query 694 CTTCCTGTGACTATCTACGAAAGCGAATTTCATGTCATTGATGGAATTCCTCAGTCGATT 753
||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 613 CTTCCAGTGACTATCTACGAAAGCGAATTCCATGTCATTGATGGAGTTCCTCAGTCGATT 672
Query 754 TTCGTGCATACCAGCTACACAATTGAGACAGTTGAAGCTGAAAGAATATCTGTTGATCAT 813
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 673 TTCGTGCATACAAGCTACACTATTGAGACAGTTGAAGCTGAAAGAATATCGGTTGATCAT 732
Query 814 GTTGCACATCTTAAGCCATCTGATGGAGGCTCAGCTGCGACTCAGTTGGCTGCTCATCTT 873
||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 733 GTTGCACATCTCAAGCCATCTGATGGAGGCTCAGCAGCGACCCAATTGGCTGCTCATCTT 792
Query 874 ACTGGAATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCTATACCAGCAT 933
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 793 ACTGGAATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCTCTATCAGTAT 852
Query 934 ATTGTCGCTATGCAGAAAGGTGATAAACCTTGTGAGAACTCAGTTCTGAGACAAGTATCT 993
||||||||||||||||||||||||| ||||| || ||| || || | |||||||||||
Sbjct 853 ATTGTCGCTATGCAGAAAGGTGATATTCCTTGCGACAACGCACTTTTTCGACAAGTATCT 912
Query 994 AGTCTGCTCAGAAGTTTGCCTGCCGCAGAATCAGAGAAG-TTCAATGAAAATTTCTTGAT 1052
|||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 913 AGTCTGCTCAGAAGTTTGCCTGCCGCAGAATCTGAGAAGTTTC-ATGAAAATTTCTTGAT 971
Query 1053 GGAGTACAACGACAAATTGCTGATGTCTTACCTAGCAATGATCACGAATTGTACCAGCAA 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GGAGTACAACGACAAATTGCTGATGTCTTACCTAGCAATGATCACGAATTGTACCAGCAA 1031
Query 1113 CATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACAAACACAGCCGAAGAGGTGG 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1032 CATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACAAACACAGCCGAAGAGGCGG 1091
Query 1173 ---TAGGACTGCGTTCATGTAAAGATTAGTTTCAATGTaaaaaaaCCTTTTCTTTCTTTT 1229
||||| || |||||||||||||||||| ||| ||||||| |||| |
Sbjct 1092 CGGTAGGAATGTGTTCATGTAAAGATTAGTGTCAGTGTAAAA-----TTTT-T------- 1138
Query 1230 GGTGGTCTGGTCCCTAAGTGAAAATTTAGA-ACTCTTTTAAGGCATTTCACTTTTCGGAA 1288
| |||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||||
Sbjct 1139 G-TGGTCTGGTCCCTAAGTGAAAATTTA-ATACTCTTT-AAGGCATTTC-CTTTTCGGAA 1194
Query 1289 CCAAACAAAC-AGCTAGGAAGCTTTTCTTCTGTTTAAGCTTTGTCTAGACAGAA----G- 1342
||| |||| | | || ||| || |||||| ||||||||||| ||||||||| |
Sbjct 1195 CCACACAA-CTAA--AG-AAG-TT--CTTCTGCTTAAGCTTTGTTTAGACAGAACTCAGA 1247
Query 1343 --CTAAGTTTAGGCCTAACTAAATTTTGCGACAAGACTGTAAAAACAAAACAGCTTTTAC 1400
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1248 AGCTAAGTTTAGGCCTAACTAAATTTTGCGACAAGACTTTAAAAACAATTCAGCTTTTAC 1307
Query 1401 CTTCTCTCAATTTTT----C-ATTTATTCAAAAATTTGAGCAATCAGTGAACAAAGAGAT 1455
|||| ||||| ||| | ||||||||||||||| || ||||||||||||||||||||
Sbjct 1308 CTTCCCTCAAATTTCAGAACCATTTATTCAAAAATTAGAACAATCAGTGAACAAAGAGAT 1367
Query 1456 TTGTTTCATATC 1467
||||||||||||
Sbjct 1368 TTGTTTCATATC 1379
> Ahg495718 jgi|Araly1|495718|fgenesh2_kg.8__1534__AT5G56280.1
Length=1145
Score = 994 bits (538), Expect = 0.0
Identities = 844/989 (85%), Gaps = 31/989 (3%)
Strand=Plus/Plus
Query 224 CGAGAGCGACAACAATGGCGCCTTCTTCGTCGAGCGGTCTCACGTTCAAGCTACATCCTC 283
|||||| |||||||||||| ||||| || || |||||| | || |||||| ||||||||
Sbjct 20 CGAGAGAGACAACAATGGCACCTTCGTCATCAAGCGGTTTAACCTTCAAGTTACATCCTT 79
Query 284 TGGTGATGC-TTAACATATCCGATCACTTCACTAGGGTTAAAACTCAGCTTAATCCTCCC 342
|||| || | | |||||||| || |||| ||||||||| ||||||||||| ||||||||
Sbjct 80 TGGTAAT-CGTAAACATATCGGACCACTACACTAGGGTCAAAACTCAGCTCAATCCTCCT 138
Query 343 GCCGC-TTCTTGCGCCACCGGGAATGGCTCCAACAACGCCGACGCGA-TGTTACTGCAAA 400
|| | || ||||| | |||| ||||||| ||||||| ||| || | || | | |||||
Sbjct 139 GCTTCAATC-TGCGCAAGCGGGCATGGCTCAAACAACGGCGAAGC-AGTGATCCAGCAAA 196
Query 401 ACCCTAGGGTTTATGGCTGCGTCATCGGTCTCCAGAGAGGTCGTACGGTTGAGATCTTCA 460
||||||||||||| || || || |||||| |||||||||||||||| |||||||||||||
Sbjct 197 ACCCTAGGGTTTACGGATGTGTGATCGGTGTCCAGAGAGGTCGTACTGTTGAGATCTTCA 256
Query 461 ACAGTTTCGAGCTGATAT-TCGATCCTGC-TCTTGATACTCTCGACAGATCCTTCCTCGA 518
||||||||||||| ||| | |||||| | | | | || || || ||| | ||||||||
Sbjct 257 ACAGTTTCGAGCTTTTATAT-GATCCTTCGAC-TCAAACCCTTGATAGAGCTTTCCTCGA 314
Query 519 GAAGAAGCAAGAACTCTATAAGAAGGTGTTCCCTGACTTCTACGTA-T-TGGGATGGTAT 576
|||||||||||| || |||||||||||||||||||| ||||| || | ||||||||||
Sbjct 315 GAAGAAGCAAGAGCTATATAAGAAGGTGTTCCCTGATTTCTA--TATTCTGGGATGGTAC 372
Query 577 TCTACGGGAAGTGACGCT-ACCGAATCTGATATGCATATCCACAAAGCTCTGATGGACAT 635
|||||||||||||| ||| | |||||||||||||||||||| |||||| ||||||| ||
Sbjct 373 TCTACGGGAAGTGATGCTGA-GGAATCTGATATGCATATCCATAAAGCTTTGATGGATAT 431
Query 636 TAATGAATCTCCTGTGTATGTTCTTTTAAATCCTGCTATCAATCATGCACAGAAGGATCT 695
|||||||||||||| ||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct 432 CAATGAATCTCCTGTTTATGTGCTTTTAAACCCTGCAATCAATCACGCACAGAAGGATCT 491
Query 696 TCCTGTGACTATCTACGAAAGCGAATTTCATGTCATTGATGGAATTCCTCAGTC-GATTT 754
||| ||||||||||| ||||| ||||| ||||||||||||||||| || ||| | |||||
Sbjct 492 TCCAGTGACTATCTATGAAAGTGAATTGCATGTCATTGATGGAATCCCGCAG-CTGATTT 550
Query 755 TCGTGCATACCAGCTACACAATTGAGACAGTTGAAGCTGAAAGAATATCTGTTGATCATG 814
|||| ||||| ||||||||||| ||||| |||||||||||| | ||||| || |||||||
Sbjct 551 TCGTTCATACAAGCTACACAATCGAGACCGTTGAAGCTGAACGGATATCAGTCGATCATG 610
Query 815 TTGCACATCT-TAAGCCATCTGATGGAGGCTCAGCTGCGACTCAGTTGGCTGCTCATCTT 873
|||||||||| || ||||||||||||||||| || || || ||||||||||||||||||
Sbjct 611 TTGCACATCTCCAA-CCATCTGATGGAGGCTCTGCAGCAACCCAGTTGGCTGCTCATCTT 669
Query 874 ACTGGAATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCTATACCAGCAT 933
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 670 ACTGGTATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCTCTACCAATAT 729
Query 934 ATTG-TCGCTATGCAGAAAGGTGATAAACCTTGTGAGAACTCAGTTCTGAGACAAGTATC 992
||| | || |||||||||| ||||| |||||||| |||||| ||||||||||||||||
Sbjct 730 CTTGCT-GCAATGCAGAAAGATGATATTCCTTGTGACAACTCACTTCTGAGACAAGTATC 788
Query 993 TAGTCTGCTCAGAAGTTTGCCTGCCGCAGAATCAGAGAAG-TT-CAATGAAAATTTCTTG 1050
||| ||||| ||||| ||||||||| |||||||| ||| || ||| || |||||||||
Sbjct 789 TAGCCTGCTAAGAAGATTGCCTGCCATGGAATCAGA-AAGATTTCAA-GATAATTTCTTG 846
Query 1051 ATGGAGTACAACGACAAATTGCTGATGTCTTACCTAGCAATGATCACGAATTGTACCAGC 1110
|||||||||||||||||||| || || |||||||||| ||||| || |||||| |||||
Sbjct 847 ATGGAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATTGTTCCAGC 906
Query 1111 AACATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACA-AACACAGC-CGAAGAG 1168
|||||||||||| |||| |||||||||||||| || || |||| || ||| | |||||||
Sbjct 907 AACATGAACGAGATGGTCGACAAATTCAACACCGCGTATGACAGAA-ACA-CTCGAAGAG 964
Query 1169 GTGGTAGGACTGCGTTCATGTAAA-GATT 1196
||||||| ||||| |||||||||| ||||
Sbjct 965 GTGGTAGAACTGCATTCATGTAAAAGATT 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54888043045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5