BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26440.1
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329038 jgi|Araly1|329038|fgenesh1_pm.C_scaffold_7001265 2494 0.0
> Ahg329038 jgi|Araly1|329038|fgenesh1_pm.C_scaffold_7001265
Length=1707
Score = 2494 bits (1350), Expect = 0.0
Identities = 1599/1718 (93%), Gaps = 22/1718 (1%)
Strand=Plus/Plus
Query 2 ATGGCTGGTATTGATAATAAAGCTGCTGTAATGGGAGAATGGTTCGACTGTAGTACTACT 61
||||||||| |||||||| |||||| |||||||||||||||||| |||||||||| | |
Sbjct 1 ATGGCTGGTTTTGATAATGAAGCTGGTGTAATGGGAGAATGGTTTGACTGTAGTA-T--T 57
Query 62 AACCACAGGAAGAGATCGAAAGCGGAACTTGGTAGAGAGTTTTCTTTA-AATTACATCAA 120
||||||||||||||||| |||||||||||||||||||| ||||||||| || ||||||||
Sbjct 58 AACCACAGGAAGAGATCAAAAGCGGAACTTGGTAGAGACTTTTCTTTAGAA-TACATCAA 116
Query 121 GAATGAGGATTCTTTGCAAACCACCTTTCAAG--A-A---A---GTTCACGAGGAGCTCT 171
||| |||||||||||||| |||| |||||||| | | | ||||||||||||||||
Sbjct 117 GAAAGAGGATTCTTTGCATACCAGCTTTCAAGAAACACCGAGTTGTTCACGAGGAGCTCT 176
Query 172 TCGTGAAAGGATTGCTGCGAGATCCGGGTTTAATGCACCGTGGTTAAACACTGAGGATAT 231
|||||||||||||||||||||||| ||||||| |||||| ||||||||||||| |||||
Sbjct 177 TCGTGAAAGGATTGCTGCGAGATCTGGGTTTATTGCACCAAGGTTAAACACTGAAGATAT 236
Query 232 TCTTCAGTCGAAATCTTTAACCATCTCTTCTCCTGGTCTTAGTCCTGCAACTCTGTTAGA 291
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCTTCAGTCGACATATTTAACCATCTCTTCTCCTGGTCTTAGTCCTGCAACTCTGTTAGA 296
Query 292 GTCTCCTGTTTTCCTCTCAAACCCTTTGCTATCTCCAACAACCGGGAAGCTCTCATCAGT 351
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct 297 GTCTCCTGTTTTCCTCTCAAACCCTTCGCTATCTCCGACAACCGGGAAGCTCTCATCACT 356
Query 352 ACCTTCTGATAAGGCTAAAGCTGAGTTATTTGACGACATTACCACATCCTTAGCCTTCCA 411
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 357 ACCTTCTGATAAGGCTAAAGAAGAGTTATTTGACGGCATTACCACATCCTTAGCCTTCCA 416
Query 412 AACCATTTCAGGAAGTGGCCTTGATCCTACTAACATCGCTTTAGAACCCGATGATTCCCA 471
| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 417 ATCCATTTCAGGAAGTAGCCTTGATCCTACAAACATCGCTTTAGAAACCGATGATTCCCA 476
Query 472 AGACTATGAAGAAAGACAGCTCGGCGGTTTAGGAGACTCGATGGCTTGTTGTGCACCTGC 531
||||||||| |||||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct 477 AGACTATGAGGAAAGACAGCTCGGCGGTTTAGGAGACTCGATTGCTAGTGGTGCACCTGC 536
Query 532 AGATGATGGATACAACTGGAGAAAATATGGACAAAAGCTAGTTAAAGGAAGTGAGTATCC 591
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 537 AGATGATGGATACAACTGGAGAAAATATGGACAGAAGCTAGTTAAAGGAAGTGAGTATCC 596
Query 592 GCGGAGCTATTACAAGTGCACGCACCCGAATTGTGAGGCCAAGAAGAAGGTTGAACGGTC 651
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 597 GCGGAGCTATTACAAGTGCACGCACCCGAATTGTGAGGTCAAGAAGAAGGTTGAACGGTC 656
Query 652 TCGGGAAGGTCATATTATAGAGATCATATACACAGGAGATCAT-ATACACAGCAAACCTC 710
|||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||||
Sbjct 657 TCGGGAAGGTCATATTATAGAGATCATATACACAGGAGCTCATAAT-CACCCCAAACCTC 715
Query 711 CACCTAACCGCCGGTCAGGGATTGGATCATCCGGTACTGGCCAAGACATGCAAATAGATG 770
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 716 CACCTAATCGCCGCTCAGGGATTGGATCATCCGGTACAGGCCAAGACATGCAAATAGATG 775
Query 771 CAACCGAATACGAAGGTTTTGCTGGAACCAATGAGAACATAGAATGGACATCACCTGTAT 830
||| ||| | ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 776 GAACAGAACAAGAAGGTTATCCTGGAACCAATGAGAACATAGAATGGACATCACCTGTAT 835
Query 831 CTGCAGAGCTCGAATACGGAAGCCATTCAGGATCAATGCAGGTTCAAAACGGGACTCATC 890
|||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| | ||
Sbjct 836 CTGCAGAGCTGGAATACGGAAGCCATTCTGGATCAATGCAGGTTCAAAGCGGGA--C-TC 892
Query 891 AGTTCGGGTATGGTGATGCAGCAGCTGATGCCTTATATAGAGATGAAAACGAAGATGATC 950
||||||| |||||||||||||||||| || |||||| |||||||||| | ||||||||||
Sbjct 893 AGTTCGGATATGGTGATGCAGCAGCTAATACCTTATTTAGAGATGAAGATGAAGATGATC 952
Query 951 GCACGTCCCACATGAGTGTTTCCCTGACTTACGATGGAGAGGTAGAAGAGTCCGAATCAA 1010
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct 953 GCACGTCCCACATGAGTGTTTCCCTGACTTACGACGGAGAAGTAGATGAATCCGAATCAA 1012
Query 1011 AGAGAAGGAAACTAGAAGCTTATGCAACAGAAACGAGTGGATCAACCAGAGCCAGCCGTG 1070
||||||||||||| |||||||||||||||||| ||||||| ||||| |||| |||||||
Sbjct 1013 AGAGAAGGAAACTCGAAGCTTATGCAACAGAAGTGAGTGGAACAACCCGAGCTAGCCGTG 1072
Query 1071 AGCCAAGAGTTGTGGTGCAGACCACAAGTGACATTGACATCCTCGATGATGGTTATCGCT 1130
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AGCCAAGAGTCGTGGTGCAGACCACAAGTGACATTGACATCCTCGATGATGGTTATCGCT 1132
Query 1131 GGCGCAAGTATGGGCAAAAAGTCGTTAAAGGAAACCCGAATCCAAGGAGCTACTATAAAT 1190
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1133 GGCGCAAGTATGGGCAAAAAGTCGTCAAAGGAAACCCGAATCCAAGGAGTTACTACAAAT 1192
Query 1191 GCACAGCTAATGGATGTACCGTAACGAAGCATGTAGAGAGAGCCTCTGATGACTTCAAGA 1250
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1193 GCACAGCTAATGGATGTACCGTAACAAAGCATGTAGAGAGAGCCTCTGATGACTTCAAGA 1252
Query 1251 GCGTACTAACAACTTATATAGGCAAGCACACCCACGTTGTACCAGCAGCACGCAACAGCA 1310
|||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1253 GCGTACTAACGAGTTATATAGGCAAGCACACCCACGTTGTGCCAGCAGCACGCAACAGCA 1312
Query 1311 GCCACGTCGGTGCAGGCAGTTCAGGGACTCTCCAAGGCAGTTTAGCGACTCAGACCCACA 1370
|||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1313 GCCATATCGGTTCAGGCAGTTCAGGGACTCTCCAAGGTGGTTTAGCGACTCAGACCCATA 1372
Query 1371 ACCACAATGTGCACTATCCAATGCCACACAGTAGATCTGAGGGACTGGCCACAGCCAACT 1430
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1373 ACCACAATGTGCACTATCCAGTGCCACACAGTAGATCTGAGGGACTGGCCACAGCCAACT 1432
Query 1431 CATCTCTATTTGACTTCCAGTCACACCTGAGGCATCCTACAGGTTTCTCCGTTTACATAG 1490
|||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1433 CATCACTATTTGACTTCCAGTCACACCTGAGGCCTCCTACAGGTTTCTCCGCTTACATAG 1492
Query 1491 GCCAATCTGAGCTTTCTGATCTTTCAATGCCTGGTCTAACTATTGGGCAAGAGAAGCTTA 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 GCCAATCTGAGCTTTCTGATCTTTCAATGCCTGGTCTAACTATTGGGCAAGAGAAGCTTA 1552
Query 1551 CCAGCCTGCAGGCGCCTGACATTGGGGATCCAACTGGCCTAATGTTGCAGTTAGCAGCAC 1610
|||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||
Sbjct 1553 CCAGCCTGCAGGCGCCAGACATTGGTGATCCAGCTGGCCTAATGTTGCACTTAGCAGCAG 1612
Query 1611 AGCCGAAGGTGGAACCAGTGTCACCACAACAGGGACTTGATTTGTCAGCGAGCTCATTGA 1670
|||| ||||| ||| ||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 1613 AGCCAAAGGTTGAAGCAGTGTCTTTACA---GGGACTTGATTTGTCACCGAGCTCATTGA 1669
Query 1671 TATGCAGAGAGATGTTGAGTAGATTACGACAGATATGA 1708
||| ||||||||| |||||||||||| ||||||||||
Sbjct 1670 TATACAGAGAGATAATGAGTAGATTACCACAGATATGA 1707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64067792090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5