BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26450.1
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492167 jgi|Araly1|492167|fgenesh2_kg.7__1600__AT4G26450.1 3013 0.0
> Ahg492167 jgi|Araly1|492167|fgenesh2_kg.7__1600__AT4G26450.1
Length=3770
Score = 3013 bits (1631), Expect = 0.0
Identities = 1972/2126 (93%), Gaps = 65/2126 (3%)
Strand=Plus/Plus
Query 1 ATGCATGCTAGGCAACGCAATGTTGGGAATGGGTACAGATCTGGTTCTATTGGGATGGGT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1 ATGCATGCTAGGCAACGCAATGTTGGGAATGGTTACAGATCTGGTTCTATTGGAATGGGG 60
Query 61 ATGTCTGGTTCTAGAATTTCTCCTGAGCGTCCTATGAGAGGACATGGGTTCTATGGTTCT 120
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 61 ATGTCTGGTTCTAGAATTTCCCCTGAGCGTCCTATGAGAGGACATGGCTTCTA------T 114
Query 121 GAACACCAACACCGTGGCTTTAACCGTGGATATGGACGTGGAAGGGGACGCTCTAAATCA 180
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 115 GAACACCAACACCGTGGCTTTAACCGTGGATATGGACGAGGTAGGGGACGCTCTAAATCA 174
Query 181 TACCACAATCAGCTGCCTCCGCCTCTGCCTCCTCCACCGGTGCAGCGTAGAAGCAGTGGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TACCACAATCAGCTGCCTCCGCCTCTGCCTCCTCCACCGGTGCAGCGTAGAAGCAGTGGC 234
Query 241 ------GGTGACGTTTTCATGGAGGCAGGTCGTCTAGCAACAGAGTACTTGGTTTCTCAA 294
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 235 GGTGGTGGTGACGTTTTCATGGAGGCTGGTCGTCTAGCAACAGAGTACTTGGTTTCTCAG 294
Query 295 GGTGTTCTACCACAAACTGTGCTTTCCAGTAAATGGCAGAATGGTAATTTTAGGAAGCAA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GGTGTTCTACCACAAACTGTGCTTTCCAGTAAATGGCAGAATGGTAATTTTAGGAAGCAA 354
Query 355 GCTGGAGAGTTTCAGAGTTCCAGGTCTCAAGAAGAAGCCCGAATGGATGTTTCAGCTCCA 414
|||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct 355 GCTGGAGAGTTTCAGAGTTCCAGGTCACAAGAAGCAGCTCGAATGGATGTTTCAGCTCCA 414
Query 415 GCTGCAGAGAAAAGGAGGTATATTGATGGCTATAGCTCAGCTGGATCCAGGAATAGCTTG 474
|| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 415 GCCGCAGATAAGAGGAGGTATATTGATGGCTATAGCTCAGCTGGCTCCAGGAATAGCTTG 474
Query 475 AAAGGAAGGAGATCCCACCGTTATGACTCGGATTTTGGGAGGAGCGGATCTTGGTCAGAG 534
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 475 AAAGGAAGGAGATCCAACCGTTATGACTCGGATTTCGGGAGGAGCGGATCTTGGTTAGAG 534
Query 535 AGAAGTAAAGCTTTTGAGACTGAGACTGGTGACGACTCTGTGTCTGGGCATCAAGAAGAG 594
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 535 AGAACTAAAGCTTTTGAGACCGAGACTGGTGACGACTCTGTGTCTGGGCATCAAGAAGAG 594
Query 595 CAGCCGCTTGCTGAAGATATTGCTAGCTCGGTTCAGCGGTCAGCCTCTGGTGAATTTATG 654
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 595 CAGCCGCTTGCTGAAGATATTGCTAGCTCGGTTCAGCGGTCAGCCTCCGGTGAATTTTTG 654
Query 655 AGAAAATGTGAAGGAGCAGGTGATTCCGAGTCTGTGTTGGACAAGTACAATCTCCAGGAT 714
||||| ||||||||||| |||||||| |||||| ||||||| ||||||||||||||||||
Sbjct 655 AGAAAGTGTGAAGGAGCTGGTGATTCTGAGTCTATGTTGGAAAAGTACAATCTCCAGGAT 714
Query 715 GAGGCACAGTCTAAGACAGGTTCCTCGAGTGCCGGGAAAGATATAGTACAGGATTGTGAA 774
|||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 715 GAGGCACAGTCTAAGACAGGATCCTCGAGTGCCGGGAAAGAAATAGTACACGATTGTGAA 774
Query 775 ATCTCTAAAGTATCCGAAGGCTCTTCTAGCTTGAGTGCTGGATCAGGAGAGATGAAAGGT 834
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 775 ATCTCAAAAGTATCAGAAGGCTCTTCTAGTTTGAGTGCTGGATCAGGAGAGATGAAAGGT 834
Query 835 AGGTCTGGTGGTAATGGTGGAGAGGATGAGAACCAGACTGCTATCGAAGATGGATCTATC 894
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 835 AGGTCTGGTGGTAATGGTGGAGAGAATGAGAACCAGTCTGCTATCGAAGATGGATCTATC 894
Query 895 CATCAACGTTGTGAAGATGCATCTATTGATCAACAGTGTGGGGCTGATGAATCATTCACC 954
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CATCAACGTTCTGAAGATGCATCTATTGATCAACAGTGTGGGGCTGATGAATCATTCACC 954
Query 955 AAGAGTGGTATTGATTTGGCAACGCTGTGTAAATTTGAGAAGGTGCCTACGAGGACACGC 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 955 AAGAGTGGTATTGATTTGGCAACGCTGTGTAAATTTGAGAAGGTGCCTACGAGAACACGC 1014
Query 1015 TCTTCTCTGACTGCAAAAGGCCCAAAGCTTTATTTGAGTCATAATATCAAGGATACCTCT 1074
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1015 TCTTCTCTGACTGCAAAGGGCCCAAAGCTTTATTTGAGTCAAAATATCAAGGATAACTCT 1074
Query 1075 CATAATTCTGGACTTGAAGAAGAAGATCAAACCGAAAATCGATGTGAGACTCGAGGCCAA 1134
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CATAATTCTGGACTTCTAGAAGAAGATCAAACCGAAAATCGATGTGAGACTCGAGGCCAA 1134
Query 1135 TCATCTGGAAAGGCCGATAGTACTGGTGATGAAAAT------GACCAAGTTGAAGATTTT 1188
|||||||||| |||||||| |||||||||||||||| ||||||||||||||| |
Sbjct 1135 TCATCTGGAACGGCCGATAATACTGGTGATGAAAATTTCAATGACCAAGTTGAAGATCTG 1194
Query 1189 GCTCTTGTTCAATAT-ATTGAGAACAGTAAATGTCATAGGTCTAATTCTTTTCCC-AGTA 1246
|| |||||||||||| || |||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1195 GCACTTGTTCAATATGAT-GAGAACAGTAAATGTCATAGGTCTAATTCTTT-CCCTAGTA 1252
Query 1247 GCATTCTCAGGGATAACAGTGAGAAAGAATCAGGATTAGAATTGCCTAATCTGCACAGAT 1306
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1253 GCATTCTCAGGGATAACAGTGAGAAAGATTCAGGATTAGAATTGCCTAATCTGCACAGAT 1312
Query 1307 CACATTCGGTGGGGAAAGTAGGTGAGAAAAGGCCTGGTGAAGGC---AGTGACTTGGAGG 1363
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1313 CACATTCGGTGGGGAAAGTAGGTGAGAAACGGGCTGGTGAAGGCGGCAGTGACTTGGAGG 1372
Query 1364 AGGGATCAAAAAGACAGAGAGATTGGGTG-----GC-AGTTTCTGAAGCTAATGAACGCT 1417
|| | ||||||||||||||||||||||| || ||| ||||||| |||||||||
Sbjct 1373 AGAAAGCAAAAAGACAGAGAGATTGGGTGCCTTTGCCAGTCCCTGAAGCCAATGAACGCC 1432
Query 1418 TCAACATGTTTAAAACAAGCGGAAACC-AATGCGATCCGGAAGAAGAAGGAAAGACAAGC 1476
||||||| ||||| |||||| ||||| ||||| |||| |||||||||| ||||||||||
Sbjct 1433 TCAACATATTTAAGACAAGCA-AAACCCAATGCAATCCAGAAGAAGAAGAAAAGACAAGC 1491
Query 1477 TCGTTCAACAAAAGACTGATTGACGGTGCTGCTGGAAAAAGGGTCAGCCATGAAAGTCTG 1536
||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| ||||
Sbjct 1492 TCGTTCAACAAAAGACTGATTGATGGTGCTACTGGAAGAAGGGTCAGCCATGAAAATCTG 1551
Query 1537 GTTAATAACTCTACATACAATAGGACACACACTGGCAGAACAGGTCCAGGGTATGCTGAA 1596
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1552 GTTAATAACTCTACACACAATAGGACACACACTGGCAAAACAGGTCCAGGGTATGCTGAA 1611
Query 1597 GAACATCAGCTGTTTCCTGCTTCGTTTAAGATGTGTGACCTAAATCTAGGGGGAGCGTCG 1656
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1612 GAACATCAGCTGTTTCCTGCTTCGTTTAAAATCTGTGACCTAAATCTAGGGGGAGCGTCG 1671
Query 1657 GATGTGAATGATGGGATAAAGGAATCTCGTCAAGCTGTTGATTTTGATCTCTCAATCAGC 1716
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 GATGTGAATGATGGCAAAAAGGAATCTCGTCAAGCTGTTGATTTTGATCTCTCAATCAGC 1731
Query 1717 AGTTCTAGTAAGTCTCTCGAGTTTGGTACGAGTACTCGGATGAGCAATGGTAAAGAGATA 1776
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 AGTTCTAGTAAGTCTCTTGAGTTTGGTACGAGTACTCGGATGAGCAATGGTAAAGAGATA 1791
Query 1777 GAAGTGATTAATTTGGATGATGAT-CAA--GAAGTGGTAAAGTCCAGCAATGATCCAGGA 1833
||||||||| |||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 1792 GAAGTGATTGATTTGGATGATGATTCCCCTGAAGTGGTAAAGTCCAGCAATGATCCGGGA 1851
Query 1834 AGAAAGCAAGAAGCTGCTCCATATATGGGCATCGATGACGTCCCAGACTACAATGAAAGA 1893
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1852 AGAAAGCAAGAGGCTGCTCCATATATGGGCATCGATGACGTCCCAGGCTACAATGAAGGA 1911
Query 1894 CTCATGATGGTAGAGTATCTTGATTCCTTT--A--C-T-CC---AATAAACCAGG-GAAC 1943
|||||||||||||||| ||||||||||||| | | | || ||||||||||| || |
Sbjct 1912 CTCATGATGGTAGAGTTTCTTGATTCCTTTGGAAACATTCCTCCAATAAACCAGGAGA-C 1970
Query 1944 CAGTAGTGTCCCACAGAATAACAACACAGTTAGCCTTCAAGAC---------C-GA---- 1989
|| |||||| ||||||||||||||| | ||||||||||||||| | ||
Sbjct 1971 CAATAGTGTTCCACAGAATAACAACGCTGTTAGCCTTCAAGACAGAGAGGTACTGAAAAC 2030
Query 1990 G--A--GGGAGCTATTGGAAATGACCAAGTACCAAATAATACAGACGATGATTCGATCTT 2045
| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2031 GTCACAGGGAGCTATTGGAAATGACCAAGTACCAAATAATACAGACGATGACTCGATCTT 2090
Query 2046 CATGTCACTCGGAGAAATACCATTGA 2071
||||||||| ||||||||||||||||
Sbjct 2091 CATGTCACTGGGAGAAATACCATTGA 2116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80598958420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5