BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26470.1
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492166 jgi|Araly1|492166|fgenesh2_kg.7__1599__AT4G26470.1 1343 0.0
Ahg918675 jgi|Araly1|918675|Al_scaffold_0678_1 719 0.0
> Ahg492166 jgi|Araly1|492166|fgenesh2_kg.7__1599__AT4G26470.1
Length=889
Score = 1343 bits (727), Expect = 0.0
Identities = 844/898 (94%), Gaps = 17/898 (2%)
Strand=Plus/Plus
Query 1 TGATCTCGAGACAAACAAGAAACTAAAACAGACAGTGTTTGTATATTTCGGACAAACAAG 60
|||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||
Sbjct 1 TGATCTCGAGACAAACAAGAAACTAAAACAGACATTGTTCGTATATTTTGGACAACCAAG 60
Query 61 ACGTTAAAAAGCTGCCTTGTCTTACAAGAAACTAGA-TTTTGTCTC-GGG-G----T-CG 112
||||| |||||||||||||||||||||||||||| ||||||||| ||| | | ||
Sbjct 61 ACGTT---AAGCTGCCTTGTCTTACAAGAAACTAGATTTTTGTCTCGGGGTGAATCTACG 117
Query 113 ATCTTATCTCCAAACAGAGAGAAATTAACAGAGACATGGGAGGTGCAGTGACGAAATCTG 172
|||| |||||| | || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATCTGATCTCCGAGCACAGACAAATTAACAGAGACATGGGAGGTGCAGTGACGAAATCTG 177
Query 173 AAACTCTGCAAAAAGAATGGGTTCCAGAGACAAAGTTGGAGGCTAAGATCATAGAAGCCG 232
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AATCTCTGCAAAAAGAATGGGTTCCAGAGACAAAGTTGGAGGCTAAGATCATAGAAGCCG 237
Query 233 TGCAACGCAGGGCATCGAGGGGCACCACAATGAAATCTTTCAACAGTATTGTTCTCAAGT 292
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 238 TGCAACGCAGGGCATCGAGAGGCACCACAATGAAATCTTTCAACAGCATTGTTCTCAAGT 297
Query 293 TCCCAAAGATCGATGATGGTCTTCGAAACTGCAAAGCCATTTTCCAAGAATTCGATGAGG 352
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 298 TCCCAAAGATCGATGATGGTCTTCGAAACTGCAAAGCCATTTTCCAAGAATTTGATGAGG 357
Query 353 ATTCAAACGGGTCAATAGATCACACGGAGCTAAAGAATTGTATCAGGAAGCTAGAGATCT 412
||||||||||||| || |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 358 ATTCAAACGGGTCTATCGATCACACAGAGCTAAAGAATTGTATCAAGAAGCTAGAGATCT 417
Query 413 CGTTCGATGAAGAAGAGATTAATGATTTGTTCAAGGCTTGCGATATTAACGAGGATATGG 472
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 418 CGTTCGATGAAGAAGAGATAAATGATTTGTTCAAGGCTTGTGATATTAACGAGGATATGG 477
Query 473 GAATTACATTTACAGAATTCATTGTTCTTCTTTGCCTCGTCTATCTTCTTAAAGACGATT 532
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 478 GAATTACATTTACAGAGTTCATTGTTCTTCTGTGCCTCGTCTATCTTCTTAAAGACGATT 537
Query 533 CATCCACTCTCCAAAAGAAATGGACAATGGGAATGCCAAAGCTGGAACCAACATTCGAGA 592
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 538 CATCCACTCTCCAAAAGAAATGGACAATGGGAATGCCGAAGCTGGAACCGACATTCGAGA 597
Query 593 CGCTTGTTGACACATTTGTGTTCCTAGACGAGAACAAGGACGGATATGTTAGCCGCGAGG 652
||||||| ||||||||||||||||| |||||||||||||| || || |||||||| ||||
Sbjct 598 CGCTTGTGGACACATTTGTGTTCCTGGACGAGAACAAGGATGGGTACGTTAGCCGTGAGG 657
Query 653 AGATGGTCCGAGCCATTGATGAATCAGGAGAACGATCCTCCGGGCGGATTGCAATGAAGA 712
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 658 AGATGGTCCGAGCCATTGATGAATCTGGAGAACGATCCTCCGGGCGGATTGCAATGAAGA 717
Query 713 GATTTGAGGAAATGGACTGGGACAAGAACGGAATGGTGAACTTCAAAGAGTTTCTCTTCG 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 718 GATTTGAGGAAATGGACTGGGACAAGAACGGAATGGTGAACTTCAAAGAGTTTCTGTTTG 777
Query 773 CATTTACGCAGTGGGTTGGGATAGATGAGAATgaagaagaagaagaagaagaCAACAATG 832
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 778 CATTTACGCAGTGGGTTGGGATAGATGAGAATGAAGACGAAGAAGA------CAACAATG 831
Query 833 AGAAAGCTTAAATGTTATGAGTTTCTAAGTCTAAATATGTGTTTTGTGTTTGCAGAAT 890
|||| |||| ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 832 AGAAGGCTTGAATGTTATGAGTTTCTAAGTCTATATATATGTTTTGTGTTTGCAGAAT 889
> Ahg918675 jgi|Araly1|918675|Al_scaffold_0678_1
Length=429
Score = 719 bits (389), Expect = 0.0
Identities = 416/429 (97%), Gaps = 1/429 (0%)
Strand=Plus/Plus
Query 148 ATGGGAGGTGCAGTGACGAAATCTGAAACTCTGCAAAAAGAATGGGTTCCAGAGACAAAG 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGGTGCAGTGACGAAATCTGAAACTCTGCAAAAAGAATGGGTTCCAGAGACAAAG 60
Query 208 TTGGAGGCTAAGATCATAGAAGCCGTGCAACGCAGGGCATCGAGGGGCACCACAATGAAA 267
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTGGAGGCTAAGATCATAGAAGCCGTGCAACGCAGGGCATCGAGAGGCACCACAATGAAA 120
Query 268 TCTTTCAACAGTATTGTTCTCAAGTTCCCAAAGATCGATGATGGTCTTCGAAACTGCAAA 327
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTTTCAACAGCATTGTTCTCAAGTTCCCAAAGATCGATGATGGTCTTCGAAACTGCAAA 180
Query 328 GCCATTTTCCAAGAATTCGATGAGGATTCAAACGGGTCAATAGATCACACGGAGCTAAAG 387
||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||||
Sbjct 181 GCCATTTTCCAAGAATTTGATGAGGATTCAAACGGGTCTATCGATCACACAGAGCTAAAG 240
Query 388 AATTGTATCAGGAAGCTAGAGATCTCGTTCGATGAAGAAGAGATTAATGATTTGTTCAAG 447
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 AATTGTATCAAGAAGCTAGAGATCTCGTTCGATGAAGAAGAGATAAATGATTTGTTCAAG 300
Query 448 GCTTGCGATATTAACGAGGATATGGGAATTACATTTACAGAATTCATTGTTCTTCTTTGC 507
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 301 GCTTGTGATATTAACGAGGATATGGGAATTACATTTACAGAGTTCATTGTTCTTCTGTGC 360
Query 508 CTCGTCTATCTTCTTAAAGACGATTCATCCACTCTCCAAAAGAAATGGACAATGGGAATG 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 CTCGTCTATCTTCTTAAAGACGATTCATCCACTCTCCAAAAGAAATGGACAATGGGA-TG 419
Query 568 CCAAAGCTG 576
|| ||||||
Sbjct 420 CCGAAGCTG 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33052569039
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5