BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26480.1
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492164 jgi|Araly1|492164|fgenesh2_kg.7__1597__AT4G26480.1 1535 0.0
Ahg495700 jgi|Araly1|495700|fgenesh2_kg.8__1516__AT5G56140.1 904 0.0
> Ahg492164 jgi|Araly1|492164|fgenesh2_kg.7__1597__AT4G26480.1
Length=1698
Score = 1535 bits (831), Expect = 0.0
Identities = 867/885 (98%), Gaps = 0/885 (0%)
Strand=Plus/Plus
Query 213 ggaggaggtggtggtagtggtggtggGAGATTTGTGACGTATCCGCCGCCTCTATCTGTG 272
||||| ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 814 GGAGGCGGTGGTGGTGGTGGTGGTGGGAGATTTGTGCCGTATCCGCCGCCTCTTTCTGTG 873
Query 273 CCTCCGTCGGCTCCTCAGTCACCTAACTTCTCTGGTGGTCTCCGATCACAGCCTTCTTTC 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 CCTCCGTCGGCTCCTCAGTCACCTAACTTCTCTGGTGGTCTCCGATCACAGCCTTCTTTC 933
Query 333 CTCGTTGAGCAAGAGAAGTATCTTTCTGAGTTACTTGCAGAGCGTCACAAGCTTACTCCA 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 CTCGTTGAGCAAGAGAAGTATCTTTCTGAGTTACTTGCAGAGCGTCACAAGCTTACTCCA 993
Query 393 TTTTTGCCTGTGCTTCCACATGTTTGCCGGCTCATGAACCAAGAAATTTTGCGTGTAACC 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 TTTTTGCCTGTGCTTCCACATGTTTGCCGGCTCATGAACCAAGAAATTTTGCGTGTAACC 1053
Query 453 ACGCTGTTGGAGAATGCCTTAAGTCAGAGTAGGTTTGATCACCCTAGCCCTCTGGCTTCT 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 ACGCTGTTGGAGAATGCCTTAAGTCAGAGTAGGTTTGATCACCCTAGCCCTCTGGCTTCT 1113
Query 513 GGAGGGATATTTCAGAATTCAAGAGCTGACATGAACGGATGGGCCTCACAATTTCCATCA 572
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GGAGGGATATTTCAGAATGCAAGAGCTGACATGAACGGATGGGCCTCACAATTTCCATCA 1173
Query 573 GAAAGATCGGTTTCATCATCCCCAGCACCAAATTGGCTTAACTCTCCTGGTAGCTCGTCC 632
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 GAAAGATCTGTTTCATCATCCCCAGCACCAAATTGGCTTAACTCTCCTGGTAGCTCGTCC 1233
Query 633 GGTCTCATCGTCAAGCGAACAATAAGGGTGGATATTCCAGTCGACAAATACCCAAACTAC 692
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1234 GGTCTCATTGTCAAGCGAACAATCAGGGTGGATATTCCAGTTGACAAATACCCAAACTAC 1293
Query 693 AATTTTGTCGGTCGTCTCTTGGGTCCTAGAGGAAACTCCCTCAAACGAGTTGAAGCGAGT 752
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 AATTTTGTCGGTCGCCTCTTGGGTCCTAGAGGAAACTCCCTCAAACGAGTTGAAGCGAGT 1353
Query 753 ACTGATTGTCGTGTTCTAATAAGGGGTAGAGGCAGCATTAAAGATCCGATTAAGGAGGAT 812
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 ACTGATTGTCGTGTTCTAATAAGGGGTAGAGGCAGCATTAAAGATCCGATTAAGGAGGAA 1413
Query 813 ATGATGAGAGGTAAACCTGGTTATGAGCACCTCAATGAACCACTCCACATCTTAGTCGAG 872
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 ATGATGAGAGGGAAACCTGGTTATGAGCACCTCAATGAACCACTCCACATCTTAGTCGAG 1473
Query 873 GCAGAATTACCCATTGAAATAGTGGACGCACGTCTCATGCAAGCCCGTGAAATACTCGAC 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 GCAGAATTACCCATTGAAATAGTGGACGCACGTCTCATGCAAGCCCGTGAAATACTCGAC 1533
Query 933 GATCTACTTACTCCCGTGGAGGAAACCCATGATTTCTACAAGAAACAACAGCTACGGGAA 992
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1534 GATCTACTTACTCCCGTGGAGGAAACCCATGATTTCTACAAGAAACAACAACTACGGGAA 1593
Query 993 TTGGCCCTTCTCAACGGCAGTCTTCGAGAAGAAGGATCTCCAATGTCTGGTTCCATCTCA 1052
||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1594 TTGGCGCTTCTTAATGGTAGTCTTCGAGAAGAAGGATCTCCAATGTCTGGTTCCATCTCA 1653
Query 1053 CCTTACAATAGCCTCGGCATGAAGAGAGCTAAGACAAGGGGCTAA 1097
||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1654 CCTTACAATAGCCTCGGGATGAAGAGAGCTAAGACAAGGGGCTAA 1698
> Ahg495700 jgi|Araly1|495700|fgenesh2_kg.8__1516__AT5G56140.1
Length=1418
Score = 904 bits (489), Expect = 0.0
Identities = 792/937 (85%), Gaps = 26/937 (3%)
Strand=Plus/Plus
Query 170 GATGATGATGATGACGTCACTtggtggtggtgctggaggcggcgg-ag-gagg-tggtgg 226
||||||||||||| |||| ||||||||||||| |||||| || || || | || ||||||
Sbjct 83 GATGATGATGATGTCGTCTCTTGGTGGTGGTGGTGGAGGAGGAGGAAGTGGGGTTGGTGG 142
Query 227 tagtggtggtggGAGATTTGTGACGTATCCGCCGCCTCTATCTGTGCCTCCGTCGGCTCC 286
| | || || ||||| ||| |||||||| || || |||| || || ||||| || |||||
Sbjct 143 TGGCGGAGGAGGGAGGTTTATGACGTATTCGTCGTCTCTTTCGGTTCCTCCTTCTGCTCC 202
Query 287 TCAGTCACCTAACTT-CTCTGGTGGTCTCCGATCACAGCCTTCTTTCCTCGTTGAGCAAG 345
|||||| ||||| || |||||||||||||||||||||| ||||| || ||| ||||||||
Sbjct 203 TCAGTCTCCTAA-TTACTCTGGTGGTCTCCGATCACAGTCTTCTGTCTTCGCTGAGCAAG 261
Query 346 AGAAGTATCTTTCTGAGTTACTTGCAGAGCGTCACAAGCTTACTCCATTTTTGCCTGTGC 405
||||||||||||| |||||||||||||||||||| |||||||||||||| | |||||||
Sbjct 262 AGAAGTATCTTTCAGAGTTACTTGCAGAGCGTCATAAGCTTACTCCATTCCTACCTGTGC 321
Query 406 TTCCACATGTTTGCCGGCTCA-TGAACCAAGAAATTTTGCGTGTAAC-CAC-GCTG-T-T 460
||||||| | | || || | | ||||||| ||| | ||| ||| ||| |
Sbjct 322 TTCCACACGCATATCGCCT-ACTAAACCAAG-----TTG-AT-AAACACACTACTGCTAA 373
Query 461 G-GAG----AA-TGCCTTAAGTCAGAGTAGGTTTGATCACCCTAGCCCTCTGGCTTCTGG 514
| ||| || | |||||||||||| || |||| |||||| ||||||||||||| ||
Sbjct 374 GAGAGACCTAATTTTTTTAAGTCAGAGTGGGCTTGACCACCCTGGCCCTCTGGCTTCAGG 433
Query 515 AGGGATATTTCAGAATTCAAGAGCTGACATGAACGGATGGGCCTCACAATTTCCATCAGA 574
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 434 AGGGATATTTCAGAATGCAAGAGCTGACATGAACGGATGGGCCTCACAGTTTCCATCAGA 493
Query 575 AAGATCGGTTTCATCATCCCCAGCACCAAATTGGCTTAACTCTCCTGGTAGCTCGTCCGG 634
|||||| ||| ||||||| || | |||||||||||||||||| |||||||| ||||||||
Sbjct 494 AAGATCTGTTCCATCATCTCCGGGACCAAATTGGCTTAACTCACCTGGTAGTTCGTCCGG 553
Query 635 TCTCATCGTCAAGCGAACAATAAGGGTGGATATTCCAGTCGACAAATACCCAAACTACAA 694
|||||||| |||||| ||||| ||||| ||||||||||||||||| || || || | |||
Sbjct 554 TCTCATCGCCAAGCGTACAATCAGGGTTGATATTCCAGTCGACAATTATCCGAATTTCAA 613
Query 695 TTTTGTCGGTCGTCTCTTGGGTCCTAGAGGAAACTCCCTCAAACGAGTTGAAGCGAGTAC 754
|||||| ||||| ||| |||||||||||||||||||||| || ||||||||||| |||||
Sbjct 614 TTTTGTTGGTCGCCTCCTGGGTCCTAGAGGAAACTCCCTGAAGCGAGTTGAAGCAAGTAC 673
Query 755 TGATTGTCGTGTTCTAATAAGGGGTAGAGGCAGCATTAAAGATCCGATTAAGGAGGATAT 814
|||||| |||||||| |||||||| |||||||| || |||||||| ||||||||||| ||
Sbjct 674 TGATTGCCGTGTTCTTATAAGGGGAAGAGGCAGTATAAAAGATCCAATTAAGGAGGAAAT 733
Query 815 GATGAGAGGTAAACCTGGTTATGAGCACCTCAATGAACCACTCCACATCTTAGTCGAGGC 874
||||||||| ||||| || || |||||||| ||||||||||| || |||||||| || ||
Sbjct 734 GATGAGAGGAAAACCAGGATACGAGCACCTAAATGAACCACTTCATATCTTAGTTGAAGC 793
Query 875 AGAATTACCCATTGAAATAGTGGACGCACGTCTCATGCAAGCCCGTGAAATACTCGACGA 934
||||||||| ||||||||||| || ||||||||||||||||| || |||||||| |||||
Sbjct 794 AGAATTACCGATTGAAATAGTCGATGCACGTCTCATGCAAGCTCGCGAAATACTTGACGA 853
Query 935 TCTACTTACTCCCGTGGAGGAAACCCATGATTTCTACAAGAAACAACAGCTACGGGAATT 994
||| |||||||| ||||||||||||||||||| ||||||||||||||||| || || |
Sbjct 854 TCTTCTTACTCCTATGGAGGAAACCCATGATTTGTACAAGAAACAACAGCTGCGCGAGCT 913
Query 995 GGCCCTT-CTCAACGGCAGTCTTCGAGAAGAAGGATCTCCAATGTCTGGTTCCATCTCAC 1053
|| || ||||| || | |||||| |||||||||||||||||||| || || | || |
Sbjct 914 AGCA-TTACTCAATGGAACTCTTCGCGAAGAAGGATCTCCAATGTCCGGCTCTGTTTCTC 972
Query 1054 CTTACAATAGCCTCGGCATGAAGAGAGCTAAGACAAG 1090
||||||||||||| || ||||||||||| || |||||
Sbjct 973 CTTACAATAGCCTTGGTATGAAGAGAGCCAAAACAAG 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5