BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26490.1
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945424 jgi|Araly1|945424|scaffold_701653.1 1330 0.0
> Ahg945424 jgi|Araly1|945424|scaffold_701653.1
Length=850
Score = 1330 bits (720), Expect = 0.0
Identities = 805/847 (95%), Gaps = 2/847 (0%)
Strand=Plus/Plus
Query 1 ATTGATCACATAACTCATGCCAAATCTACCTCATCTTCCTCCTCCACCGCAGTTGCAACC 60
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 5 ATTGATCACATAACTCATGCCAAATCAACCTCCTCTTCCTCCTCCACCGCAGTTGCAACC 64
Query 61 GCCCGAAACGCCATCATGGGAAACACCATCGTCTGTATGGTATACTCCAAGAACCACACC 120
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 65 GCCCGAAACGCCATCATGGGAAACTCCATCTTCTGTATGGTATACTCCAAGAACCACTCC 124
Query 121 ATGGAGAACACCACAGAGCACACAATCCACACCAGTTGGCCAAATGGTCTTAACAAAGCC 180
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 125 ATGGAGAACACCACAAAGCACACAGTCCACACCAGTTGGCCAAATGGTCTTAACAAAGCC 184
Query 181 AGCAACGGTTAGATTCAACGGTCTTGATGCAGAGCCGAGGAAAGATAGGGTGATTCTCCG 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 185 AGCAACGGTTAGATTCAACGGTCTTGATGCAGAGTCGAGGAAAGATAGGGTGATTCTCCG 244
Query 241 TCAGCCAAGGAGTAGCAGGACCAGTCTCTGGATATGGTGTGTTGCCGGTTTCTGTTTTGT 300
||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 245 TCAGCTAAGGAGTAGCAGGACCAGTCTGTGGATATGGTGTGTTGCCGGTTTATGTTTTGT 304
Query 301 GTTCAGCCTTTTGCTTATCTTTTTTGCGATTGCCACTTTGATAGTGTTTCTTGCGATTAG 360
||||||||||||||||||||| |||||||| | |||||||| ||||||||||| |||||
Sbjct 305 GTTCAGCCTTTTGCTTATCTTCTTTGCGATAACTACTTTGATTGTGTTTCTTGCTATTAG 364
Query 361 ACCAAGAATACCTGTTTTCGACATCCCAAACGCAAACCTACACACGATCTACTTCGACAC 420
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 365 ACCAAGAATACCTGTTTTCGACATCCCAAACGCGAACCTACACACGATCTACTTTGACTC 424
Query 421 GCCGGAGTTTTTCAACGGCGATTTGTCCATGCTGGTGAATTTCACTAACCCTAATAAGAA 480
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 425 ACCAGAGTTTTTCAACGGCGATTTGTCGATGCTGGTGAATTTCACAAACCCTAATAAGAA 484
Query 481 GATAGAAGTGAAGTTTGAGAAGCTTCGGATTGAGCTCTTCTTCTTCAATAGATTGATTGC 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 485 GATAGAAGTGAAGTTTGAGAAGCTTCGGATCGAGCTCTTCTTCTTCAATAGATTGATTGC 544
Query 541 AGCGCAAGTGGTCCAGCCATTCTTGCAGAAAAAGCATGAGACGAGGTTGGAACCAATCCG 600
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 545 AGTGCAAGTGGTCCAGCCATTCTCGCAGAAAAAGCGTGAGACGAGGTTGGAACCAATCCG 604
Query 601 TTTGATCTCTAGTTTGGTAGGCTTGCCTGTAAACCACGCGGTGGAACTCAGGAGACAGCT 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 605 TTTGATCTCTAGTTTGGTAGGCTTGCCTGTAAACCACGCGGTGGAACTCAAGAGACAGCT 664
Query 661 GGAAAACAACAAGATAGAATATGAGATTAGAGGTACCTTCAAAGTCAAAGCTCATTTTGG 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 665 GGAAAACAACAAGATAGAATATGAGATTAGAGGTACCTTCAAAGTCAGAGCTCATTTTGG 724
Query 721 AATGATTCATTACTCTTAT-CAGCTGCACGGGAGGTGCCAACTTCAGATGACCGGTCCAC 779
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 725 AATGATTCATTACTCTTATTC-GCTGCACGGGAGGTGCCAACTTCAGATGACCGGTCCAC 783
Query 780 CAACCGGAATCCTGATTTCTCGTAATTGCACGACGAAGAAATGAAAAAGAATACGGTACA 839
|||| |||||||||||||||| ||||||||||| ||||||| || ||||| ||| ||
Sbjct 784 CAACAGGAATCCTGATTTCTCATAATTGCACGATGAAGAAACGATGAAGAAGACGATATG 843
Query 840 GTTCTCT 846
|||||||
Sbjct 844 GTTCTCT 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5