BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26500.1
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492161 jgi|Araly1|492161|fgenesh2_kg.7__1594__AT4G26500.1 1929 0.0
> Ahg492161 jgi|Araly1|492161|fgenesh2_kg.7__1594__AT4G26500.1
Length=1374
Score = 1929 bits (1044), Expect = 0.0
Identities = 1285/1398 (92%), Gaps = 29/1398 (2%)
Strand=Plus/Plus
Query 44 CTCTCTCGAAGTTTCAAGTTCGCGACTATGGCAGCAGCGATGTCTTCTTCTTGTTGCGCT 103
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCGAAGTTTCAAGTT--CGACTATGGCAGCAGCGATGTCTTCTTCTTGTTGCGCT 58
Query 104 TCCTCGCTTCGTTTAATCCCATTCAAACGGACCTTGTTTTCTTCAATCCATTATCCGGCC 163
|| || |||||| ||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 59 TCTTCACTTCGTCTAATCCCATTCAAACGGACCTTGTTTTCTTCTATCCATTATCCTGCC 118
Query 164 AAAACCCTTCTTCTACGACCACTAAAACCGTCGGAAGTTCCTTCCTTTCGCCGGACGATC 223
||| |||| |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 119 AAAGCCCTGATTCTCCGACCACTAAAACCGTCGGAAATTCCTTCCTTTCGCCGGACGATC 178
Query 224 ATCACTTTCCAGAAAATTTCAACCGGGATTGTTCCTCCACCATCGGC-T--TCATCATCT 280
||||| |||||||||||||||||||| ||||||||||| ||||||| | |||||||||
Sbjct 179 ATCACGTTCCAGAAAATTTCAACCGGAATTGTTCCTCCTTCATCGGCTTCATCATCATCT 238
Query 281 CCGTCGAGCTATGGAGACCTTCAACCAATCGAAGAGCTTCCACCGAAGCTACAAGAGATC 340
||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 239 CCGTCTAGCTCTGGAGACCTTCAACCAATCGAAGAGCTGCCTCCGAAGCTACAAGAGATC 298
Query 341 GTCAAGCTTTTCCAATCGGTACAAGAGCCAAAGGCTAAATACGAGCAGCTTATGTTCTAC 400
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 GTCAAGCTTTTCCAATCGGTACAAGAGCCAAAGGCTAAATACGAGCAGCTTCTGTTCTAC 358
Query 401 GGGAAGAATCTGACACCTCTCGATTCTCAATTCAAGACGAGGGAGAATAAAGTAGAAGGA 460
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGGAAGAATCTGAAACCACTCGATTCTCAATTCAAGACGAGGGAGAATAAAGTAGAAGGA 418
Query 461 TGTGTTTCTCAGGTTTGGGTTAGGGCTTTCTTTGATGAGGAACGTAATGTTGTGTATGAA 520
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 419 TGTGTTTCTCAGGTTTGGGTTAGGGCTTTCTTCGATGAGCAACGTAATGTTGTGTATGAA 478
Query 521 GCTGATTCTGATTCGGTTCTCACTAAAGGGTTAGCTGCTCTATTAGTCAAGGGTTTATCT 580
||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 479 GCTGATTCTGATTCGCTTCTCACTAAAGGTTTAGCTGCTCTATTAGTCCAGGGTTTATCT 538
Query 581 GGAAGACCTGTCCCTGAGATTTTGAGGATAACACCTGATTTCGCTGTTCTTCTCGGGTTG 640
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 539 GGAAGACCTGTGCCTGAGATTTTGAGGATTTCACCTGATTTCGCTCTTCTTCTCGGTTTG 598
Query 641 CAGCAGAGTCTGTCTCCTTCTAGAAACAATGGATTACTTAATATGCTTAAGCTGATGCAG 700
|||||||||||| |||||||| ||| ||||||||| ||||||||||||||| ||||||||
Sbjct 599 CAGCAGAGTCTGACTCCTTCTCGAAGCAATGGATTCCTTAATATGCTTAAGTTGATGCAG 658
Query 701 AAAAAGGCTCTTCATTTGGAAGTCAAAGGTGAGGAAGATTCAAGTTCTGGAGAGAGTTCA 760
||||||||||||||||||||||||||||||| ||||||||||||||| ||| | | |
Sbjct 659 AAAAAGGCTCTTCATTTGGAAGTCAAAGGTGTGGAAGATTCAAGTTC---AGA-A-T-C- 711
Query 761 GAATCCAGCTTTGTGTCTATTCCTGAGACTAAGGACGAAGCTAATGTTCCGGAGGTGGAT 820
| ||||||||||||| |||||||| | |||||||||||| |||||| |||||||||
Sbjct 712 ----C-AGCTTTGTGTCTACTCCTGAGATTGAGGACGAAGCTAGTGTTCCCGAGGTGGAT 766
Query 821 TTGGAGTCTAAACCTGATCTAGTTGAGGATTTGGGAACAGAAAAGATTGATGATTCTGAG 880
| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TCGGAGTCCAAACCTGGTCTAGTTGAGGATTTGGGAACAGAAAAGATTGATGATTCTGAT 826
Query 881 AGTGGGTCAAATGTTGTTGCTTTAGGGAGTAGAGGGATGAGGATAAGAGAGAAATTGGAG 940
|||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 827 AGTGGGTCTAATGGTGTTGCTTTAGGGAGTAGAGGGATGAGGATAAGAGAGAGATTGGAG 886
Query 941 AAGGAGCTAGATCCTGTTGAGTTAGAAGTTGAAGATGTTTCTTACCAGCACGCAGGACAT 1000
||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 887 GAGGAGTTAAATCCTGTTGAGTTGGAAGTTGAAGATGTTTCTTACCAGCACGCAGGACAT 946
Query 1001 GCCGCTGTTAGAGGTAGTGCTGGTGATGATGGGGAAACACATTTCAACTTGCGAATCGTT 1060
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 947 GCCGCTGTTAGAGGTAGTGCTGGTGATAATGGGGAAACACATTTCAACTTGCGAATCGTT 1006
Query 1061 TCGGATGCTTTCCAAGGTAAAAGCTTGGTCAAGAGACATAGGCTGATATATGACTTGTTG 1120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 TCGGATGTTTTCCAAGGTAAAAGCTTGGTCAAGAGACATAGGCTGATATATGACTTGTTG 1066
Query 1121 CAAGATGAGTTGAAGAGCGGGTTACATGCTCTCTCTATTGTGGCAAAGACTCCTGCTGAG 1180
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1067 CAAGAGGAGTTGAAGAGCGGCTTACATGCTCTCTCTATCGTGGCAAAGACTCCTGCTGAG 1126
Query 1181 GTTTGAGGGTGTAACATTGGAAGAAGTCAGGTCCTGATTCTTTTACTTCTTTTGGTCCAT 1240
||||||||||||| || |||||| |||||||||| ||||||||||| ||||| ||| |||
Sbjct 1127 GTTTGAGGGTGTAGCAATGGAAGGAGTCAGGTCCAGATTCTTTTACCTCTTTAGGTTCAT 1186
Query 1241 TTGCTTT-GGATATTGTTCTCTGGACCTTCTAATAATGTTAAGAGCTCGATCAGGATTGT 1299
||||||| |||| |||||||||||||||| |||||||||| |||||| ||||||||| |
Sbjct 1187 TTGCTTTTGGATTTTGTTCTCTGGACCTTTTAATAATGTTGAGAGCTTGATCAGGATCAT 1246
Query 1300 GTTAAATGAGAGATAGATATTGAAGGATATAAATAATGTTTTCGCCAATCGCCACATGAT 1359
||| |||||||||| | |||||||||| ||| ||||||||||| || || | ||||
Sbjct 1247 GTTTAATGAGAGATTGCTATTGAAGGA-ATATATAATGTTTTCACC----GC-A--TGAT 1298
Query 1360 TCACCATTTTCAAACTG-ATTTCCCTTTATCTTATGAGGGTCAAGGTCTTTTTTGTTTTG 1418
|| |||||| ||||||| ||| || || ||||||| || |||||||||||||| | |||
Sbjct 1299 TCGCCATTTGCAAACTGCATT-CCATTCATCTTATTAGCGTCAAGGTCTTTTT-GCTTTA 1356
Query 1419 ATATGGTTTCCTGATATT 1436
||||||||||||||||||
Sbjct 1357 ATATGGTTTCCTGATATT 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54011967410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5