BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26510.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329032 jgi|Araly1|329032|fgenesh1_pm.C_scaffold_7001259 2422 0.0
Ahg314795 jgi|Araly1|314795|fgenesh1_pm.C_scaffold_1003575 283 3e-75
> Ahg329032 jgi|Araly1|329032|fgenesh1_pm.C_scaffold_7001259
Length=1410
Score = 2422 bits (1311), Expect = 0.0
Identities = 1377/1410 (98%), Gaps = 0/1410 (0%)
Strand=Plus/Plus
Query 117 ATGGGTTCTAAGTCCGTTGTTGACATGATCGAAGCTGCCTCGCGGGCACATTTTTCTGGT 176
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 1 ATGGGTTCTAAGTCCGTTGTTGACATGATCGAAGCTGCCTCGGGGGTACATTTTTCTGTT 60
Query 177 TTACACGTGAATGGGCACATGAATGGGTTGGAACCAAGTGCACTTAAGGAAACCACTTCT 236
|||||||||||||| |||||||||||||||||||| || ||| ||||||| |||||||||
Sbjct 61 TTACACGTGAATGGCCACATGAATGGGTTGGAACCTAGAGCAGTTAAGGATACCACTTCT 120
Query 237 GCATCAGAAGATATCCAAAGACAGCCTTTTGTAATAGGTGTTGCTGGAGGCGCAGCATCG 296
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GCATCAGAAGATATCCAAAGACAGCCTTTTGTTATAGGTGTTGCTGGAGGCGCAGCATCG 180
Query 297 GGAAAGACTACTGTTTGTGATATGATAATCCAGCAACTGCACGATCAGCGTGTTGTACTT 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GGAAAGACTACTGTTTGTGATATGATAATCCAGCAACTGCATGATCAGCGTGTTGTACTT 240
Query 357 ATTAACCTGGACTCGTTCTATCATAATCTGACTGAAGAAGAACTTGCTAGAGTTCATGAA 416
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTAACCTGGACTCGTTCTATCACAATCTGACTGAAGAAGAACTTGCTAGAGTTCATGAA 300
Query 417 TACAACTTTGATCATCCAGACGCATTTGACACAGAGCATTTATTGTCTTGTATGGAGAAA 476
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 TACAACTTTGACCATCCAGACGCATTTGACACAGAGCATTTATTGTCTTGTATGGAAAAA 360
Query 477 TTGAGGCAAGGGCAAGCTGTAGATATTCCAAAATATGATTTTAAAACTTACAGGAGCAGT 536
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 361 TTGAGGCAAGGGCAAGCTGTAGATATACCAAAATACGATTTCAAAACTTACAGGAGCAGT 420
Query 537 GTTTTCAGAAGGGTAAATCCTACAGATGTAATAATTCTTGAAGGGATACTTTTGTTCCAT 596
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 421 GTTTTCAGAAGGGTAAATCCTACGGATGTAATAATTCTTGAAGGGATACTTTTATTCCAT 480
Query 597 GATCCACGCGTCCGAAAGTTGATGAACATGAAGATTTTTGTTTGCACAGATGCTGACGTT 656
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATCCACGCGTCCGAAAATTGATGAACATGAAGATTTTTGTTTGCACAGATGCTGACGTT 540
Query 657 CGTTTGGCAAGAAGGATAAAAAGAGATACTGTCGAGAATGGTAGAGATATCGGCACAGTA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGTTTGGCAAGAAGGATAAAAAGAGATACTGTCGAGAATGGTAGAGATATCGGCACAGTA 600
Query 717 CTTGACCAGTACTCAAAGTTTGTGAAGCCTGCTTTTGATGACTTCATTCTTCCAACGAAG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 CTTGACCAGTACTCAAAGTTTGTGAAGCCTGCTTTTGATGACTTCATTCTTCCGACGAAG 660
Query 777 AAATATGCAGATATTATAATCCCTCGTGGTGGGGATAATCATGTAGCTATTGACTTAATT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAATATGCAGATATTATAATCCCTCGTGGTGGGGATAATCATGTAGCTATTGACTTAATT 720
Query 837 GTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAAATATATCCTAATCTC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAAATATATCCTAATCTC 780
Query 897 TACGTTATACACTCGACATTTCAGATAAGAGGGATGCACACCCTTATACGAGATTCTCAG 956
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 TATGTTATACACTCGACATTTCAGATTAGAGGGATGCACACCCTTATACGAGATTCTCAG 840
Query 957 ACAACCAAACATGATTTTGTCTTCTATTCTGATCGATTGATTAGGCTGGTTGTAGAACAT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACAACCAAACATGATTTTGTCTTCTATTCTGATCGATTGATTAGGCTGGTTGTAGAACAT 900
Query 1017 GGTCTTGGACATCTGCCTTTTACTGAAAAGCAAGTGATTACTCCAACCGGATGTGTGTAT 1076
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGTCTTGGACATCTGCCTTTCACTGAAAAGCAAGTGATTACTCCAACCGGATGTGTGTAT 960
Query 1077 TCTGGTGTGGATTTCTGTAAACGGTTATGTGGTGTCTCGGTGATTAGGAGTGGTGAGAGC 1136
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 961 TCTGGTGTGGATTTCTGTAAACGGTTATGTGGTGTCTCTGTGATTAGGAGTGGTGAGAGC 1020
Query 1137 ATGGAGAATGCGTTACGAGCATGTTGCAAAGGTATCAAGATCGGGAAGATCCTAATTCAC 1196
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATGGAGAATGCGTTGCGAGCATGTTGCAAAGGTATCAAGATCGGGAAGATCCTAATTCAC 1080
Query 1197 AGAGAAGGTGACAATGGTCAACAGCTTGTTTATGAGAAATTGCCAAATGATATCTCAGAG 1256
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1081 AGAGAAGGCGACAATGGTCAACAGCTTGTTTATGAGAAATTGCCAAATGATATCTCGGAG 1140
Query 1257 AGGCATGTCCTATTGTTGGATCCTATTCTCGGGACAGGAAACTCAGCGGTTGAAGCTATC 1316
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1141 AGGCATGTCCTATTGTTGGATCCTATTCTCGGCACAGGAAACTCAGCGGTTGAAGCTATC 1200
Query 1317 AACCTCCTTATAAGCAAGGGCGTACCTGAGGGAAACATCATATTTCTAAACCTTATCTCA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AACCTCCTTATAAGCAAGGGCGTACCTGAGGGAAACATCATATTTCTAAACCTTATCTCA 1260
Query 1377 GCACCTCAAGGTGTTCATGTGGTCTGCAAAAAATTCCCAAGAATAAAGATAGTGACATCT 1436
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCACCTCAAGGTGTTCATGTTGTCTGCAAAAAATTCCCAAGAATAAAGATAGTGACATCT 1320
Query 1437 GAAATCGATAATGGGTTAAACGAAGAGTTTCGTGTTATTCCTGGTATGGGGGAGTTTGGG 1496
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1321 GAAATCGATAATGGGTTAAACGACGAGTTTCGTGTTATTCCTGGTATGGGCGAGTTTGGG 1380
Query 1497 GACAGATATTTTGGCACAGACGATGACTAG 1526
||| |||||||||| |||||||||||||||
Sbjct 1381 GACCGATATTTTGGAACAGACGATGACTAG 1410
> Ahg314795 jgi|Araly1|314795|fgenesh1_pm.C_scaffold_1003575
Length=3114
Score = 283 bits (153), Expect = 3e-75
Identities = 238/279 (85%), Gaps = 6/279 (2%)
Strand=Plus/Plus
Query 645 GATGCTGACGTTCGTTTGGCAAGAAGGATAAAAAGAGATACTGTCGAGAATGG-TAGAGA 703
||||| || || ||||| || |||||||| ||| | |||||||| ||||| || ||||||
Sbjct 583 GATGCCGATGTGCGTTTAGCGAGAAGGATTAAACGTGATACTGTTGAGAA-GGATAGAGA 641
Query 704 TATCGGC-ACAGTACTTGACCAGTACTCAAAGTTTGTGAAGCCTGCTTTTGATGACTTCA 762
|||| || ||||| ||||||||||||||||||||||||||||| || ||||| || ||||
Sbjct 642 TATC-GCTACAGTTCTTGACCAGTACTCAAAGTTTGTGAAGCCAGCATTTGAGGATTTCA 700
Query 763 TTCTTCCAACGAAGAAATATGCAGATATTATAAT-CCCTCGTGGTGGGGATAATCATGTA 821
| || ||||| |||||||| |||||||| ||||| ||| || ||||| |||||||||||
Sbjct 701 TACTCCCAACAAAGAAATACGCAGATATAATAATTCCC-CGAGGTGGTGATAATCATGTG 759
Query 822 GCTATTGACTTAATTGTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAA 881
|||||||| || |||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 760 GCTATTGATTTGATTGTGCAACATATCCGCACGAAGCTCGGTCAACATGATCTCTGTAAA 819
Query 882 ATATATCCTAATCTCTACGTTATACACTCGACATTTCAG 920
|||||||| ||||| || ||||| || || || ||||||
Sbjct 820 ATATATCCAAATCTTTATGTTATTCAATCAACTTTTCAG 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5