BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26520.1
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492160 jgi|Araly1|492160|fgenesh2_kg.7__1593__AT4G26520.1 1984 0.0
Ahg492157 jgi|Araly1|492157|fgenesh2_kg.7__1590__AT4G26530.2 1513 0.0
> Ahg492160 jgi|Araly1|492160|fgenesh2_kg.7__1593__AT4G26520.1
Length=1397
Score = 1984 bits (1074), Expect = 0.0
Identities = 1186/1241 (96%), Gaps = 3/1241 (0%)
Strand=Plus/Plus
Query 291 ATGTCTGCTTTTGTCAGCAAATACGAAGATGAGCTGATCAAGACGGCCAAGTACATTGCA 350
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 158 ATGTCTGCTTTTGTTGGCAAATACGCAGATGAGCTGATCAAGACGGCCAAGTACATTGCA 217
Query 351 ACGCCGGGAAGGGGCATTTTGGCGGCAGATGAGAGCACAGAAACCATTGGGAAACGATTC 410
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 218 ACGCCGGGAAGGGGCATTTTGGCGGCAGACGAGAGCACAGAAACCATCGGGAAACGATTC 277
Query 411 GCCGGAATCAATGTTGAGAACACTGAGTCCAACCGCCAAGCTTACCGTGAGCTCCTCTTC 470
|| ||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||
Sbjct 278 GCTGGAATCAATGTTGAGAACATTGTGTCCAACCGCCAAGCTTACCGAGAGCTCCTCTTC 337
Query 471 ACTTCCCCTGGCAGTTACCCTTGCCTCTCTGGTGTTATACTCTTCGAGGAAACCCTCTAC 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 ACTTCCCCTGGCAGTTACCCTTGCCTCTCTGGTGTTATACTCTTCGAGGAAACCCTCTAC 397
Query 531 CAGAAAACCTCTGATGGCAAACCCTTCGTCGATCTCCTCATGGAGAACGGTGTTATCCCC 590
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 398 CAGAAAACCTCTGATGGAAAACCCTTCGTCGATCTCCTCATGGAGAACGGCGTTATCCCC 457
Query 591 GGAATCAAAGTGGACAAGGGTTTGGTTGATCTAGCAGGGACCAACGGCGAGACCACTACT 650
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 458 GGAATCAAAGTGGACAAGGGTTTGGTTGATCTAGCAGGAACCAACGGCGAGACCACTACT 517
Query 651 CAAGGTCTAGACTCGCTTGGTGCACGGTGTCAGCAGTATTACGAGGCAGGAGCCCGGTTT 710
|| |||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct 518 CAGGGTCTAGACTCGCTTGGTGCACGGTGCCAGGAGTATTACAAGGCAGGAGCCCGGTTT 577
Query 711 GCTAAATGGCGTGCATTCTTCAAGATTGGGGCCACCGAGCCAAGCGTTCTCTCCATCCAA 770
||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 578 GCTAAATGGCGTGCATTCTTCAAGATTGGGGCCACTGAGCCAAGCGCTCTCTCGATCCAA 637
Query 771 GAGGACGCCAGGGTGCTAGCCCGCTATGCCATCATCTGCCAGGAGAATGGACTTGTCCCG 830
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 638 GAGGACGCCAAGGTGCTAGCCCGCTATGCCATCATCTGCCAGGAGAACGGACTTGTCCCG 697
Query 831 ATCGTCGAGCCAGAGGTGCTGACAGGTGGGAGCCACGACATCAAGAAATGTGCGGCGGTG 890
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 698 ATCGTCGAGCCAGAGGTGCTGACCGGTGGGAGCCACGACATCAAGAAATGTGCGGCGGTG 757
Query 891 ACTGAGACGGTTCTTGCTGCCGTGTTCAAGGCCTTGAACTACCACCATGTCCTCCTCGAA 950
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 758 ACCGAGACGGTTCTTGCTGCCGTGTTCAAGGCCTTGAACGACCACCATGTCCTCCTCGAA 817
Query 951 GGCACTCTGCTTAAACCTAACATGGTCACTCCCGGCTCCGACAGCCCAAAGGTTGCACCG 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GGCACTCTGCTTAAACCTAACATGGTCACTCCCGGCTCCGACAGCCCAAAGGTTGCACCG 877
Query 1011 GAACTAATTGCGGAATACACGGTGACTGCTCTGCGCCGCACAGTCCCACCAGCTATTCCG 1070
||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 GAAGTAATCGCAGAATACACGGTGACTGCTCTGCGCCGCACAGTCCCACCAGCTATTCCG 937
Query 1071 GGAATCGTGTTCCTCTCAGGCATACAGCGCGAAGAGCAAGCGACACTAAATCTAAACGCA 1130
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 938 GGAATCGTGTTCCTCTCAGGCGTACAGCGGGAAGAGCAAGCGACACTAAATCTAAACGCA 997
Query 1131 ATGAACAAGCTTGATGTGTTGAAGCCATGGACGCTCACTTTCTCTTTTGGCGGAGCCCTC 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 ATGAACAAGCTTGATGTGTTGAAGCCATGGACGCTCACTTTCTCTTTTGGCGGAGCCCTC 1057
Query 1191 CAGCAAAGTGCTATCAAGGCTTGGGCCGGTAAGCCCGAGAACGTAGCCAAAGCTCAGGCC 1250
|||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1058 CAGCAAAGCGCTCTCAAGGCTTGGGCCGGTAAGACCGAGAACGTAGCCAAAGCTCAAGCC 1117
Query 1251 AAGTTCCTGACCAGGTGCAAGGCTAACAAGGACGCTACCCTCGGGAAATACACCGGCTGG 1310
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1118 AAGTTCCTGACCAGGTGCAAGGCTAACTCGGATGCTACCCTCGGGAAATACACCGGCTGG 1177
Query 1311 GCTTCTGGTGACTCGGCCGCTTTCGAGAACTTGGTTGTGATAGGATACAGGTACTAGGAT 1370
|||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1178 GCTTCTGGTGACTCAGCCGCCTCCGAGAACTTGGTTGTGATAGGATACAGGTACTAGGAT 1237
Query 1371 CCTTTGAGAACGGGCGTTTGCCTTTGATGCGGTTTGAGTAGATATCTAATGTTTCGTGTG 1430
|||||||||||||||| ||||||||||||||||||||| || |||||| |||||| ||
Sbjct 1238 TGTTTGAGAACGGGCGTTCGCCTTTGATGCGGTTTGAGTATATGTCTAATATTTCGT-TG 1296
Query 1431 -TGTTTTAACTGTTTGAATGTTCAATTTTGCAGACTGCTAATAATTGTTATTTT-CCGGT 1488
|||| |||||||||||||||||| ||||||| | ||||||||||||||||||| || ||
Sbjct 1297 GTGTTGTAACTGTTTGAATGTTCAGTTTTGCAAATTGCTAATAATTGTTATTTTTCCTGT 1356
Query 1489 TACTGTCAAACTATCCATGTGAAATTCACGTTTTGAAAAGC 1529
||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1357 TACTGTCAAGCTATCCATGTGAGATTCACGTTTTGAAAAGC 1397
Score = 224 bits (121), Expect = 1e-57
Identities = 138/146 (95%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 101 TCTCCTCCACATATCCAAGACTTTGGAGATAATGCTGGTATCCTTGGCTAGCATTTGGTA 160
||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1 TCTTCTCCACATATCCAAGACTTTGGAGATAAAGCTGGTATCCTTGGCTGGCATTTGGTA 60
Query 161 GTGTCGAAGCAATCATTCCTCGGGCTCTCCTTTCTAACTG--CATTCCTAGAAAATATTA 218
|||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||
Sbjct 61 GTGTCGAAGCAATCATTCATCGGGCTCTCCTTTCTAACTGTATATTCCTAGAAGATATTA 120
Query 219 CCCTAAAGGCCTTTGTCTTGGCATCC 244
||||||||||||||||||||||||||
Sbjct 121 CCCTAAAGGCCTTTGTCTTGGCATCC 146
> Ahg492157 jgi|Araly1|492157|fgenesh2_kg.7__1590__AT4G26530.2
Length=1422
Score = 1513 bits (819), Expect = 0.0
Identities = 1188/1362 (87%), Gaps = 41/1362 (3%)
Strand=Plus/Plus
Query 101 TCTCCTCCACATATCCAAGACTTTGGAGATAATGCTGGTATCCTTGGCTAG-CATTTGGT 159
||| |||||||||||||||||||||||||||| ||||| ||| |||| | | ||||||||
Sbjct 9 TCTTCTCCACATATCCAAGACTTTGGAGATAAAGCTGGGATCATTGG-TTGCCATTTGGT 67
Query 160 AGTGTCGAAGCAATCATTCCTCGGGCTCTCCTTTCTAACTGCA-TTCCTAGAAAATATTA 218
||||| |||||||||| ||| | | | || || | | | || | || ||
Sbjct 68 AGTGTAGAAGCAATCA---CTC---ATTTGC-TT-TATC-GGAGTTGC-AG------GTA 111
Query 219 CCCTAAAGGCCTTTGTCTTGGCATCCTCGTCCTCTTCAGCAGGAACTCATCTGTCTTGGA 278
|| |||| |||||||||||| |||||||||||||||| ||||| ||| ||||| |
Sbjct 112 --CTTAAGG-CTTTGTCTTGGCTTCCTCGTCCTCTTCAG-TTAAACTCGTCTCTCTTGCA 167
Query 279 ---AGAATTA-TTACCATGTCTGCTTTTGTCAGCAAATACGAAGATGAGCTGATCAAGAC 334
||| | |||||||||||||||||| ||||||||| |||||||||||| |||||
Sbjct 168 CTCCGAA-AAGCAACCATGTCTGCTTTTGTCGGCAAATACGCAGATGAGCTGATTAAGAC 226
Query 335 GGCCAAGTACATTGCAACGCCGGGAAGGGGCATTTTGGCGGCAGATGAGAGCACAGAAAC 394
||| |||||||||||||| ||||||| |||||||||||| ||||| |||||||||| |||
Sbjct 227 GGCTAAGTACATTGCAACACCGGGAAAGGGCATTTTGGCAGCAGACGAGAGCACAGGAAC 286
Query 395 CATTGGGAAACGATTCGCCGGAATCAATGTTGAGAACACTGAGTCCAACCGCCAAGCT-T 453
||| ||||||||||||||| | |||||||| |||||| ||||||||||||||||||| |
Sbjct 287 CATCGGGAAACGATTCGCCAGCATCAATGTCGAGAACGTTGAGTCCAACCGCCAAGCTCT 346
Query 454 ACCGTGAGCTCCTCTTCACTTCCCCTGGCAG-TTACCCTTGCCTCTCTGGTGTTATACTC 512
|||||||||||||||||||||||||||| | || ||||||||||||||||||||| ||
Sbjct 347 -CCGTGAGCTCCTCTTCACTTCCCCTGGC-GCTTTCCCTTGCCTCTCTGGTGTTATCCTT 404
Query 513 TTCGAGGAAACCCTCTACCAGAAAACCTCTGATGGCAAACCCTTCGTCGATCTCCTCATG 572
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 405 TTTGAGGAAACCCTCTACCAGAAAACCTCTGATGGCAAACCCTTTGTTGATCTCCTCATG 464
Query 573 GAGAACGGTGTTATCCCCGGAATCAAAGTGGACAAGGGTTTGGTTGATCTAGCAGGGACC 632
|||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 465 GAGAACGGAGTTATCCCTGGAATCAAAGTGGACAAGGGTGTGGTTGATCTAGCAGGGACC 524
Query 633 AACGGCGAGACCACTACTCAAGGTCTAGACTCGCTTGGTGCACGGTGTCAGCAGTATTAC 692
|||||||||||||||||||| |||||||| |||||||||||||| || ||| ||||||||
Sbjct 525 AACGGCGAGACCACTACTCAGGGTCTAGATTCGCTTGGTGCACGTTGCCAGGAGTATTAC 584
Query 693 GAGGCAGGAGCCCGGTTTGCTAAATGGCGTGCATTCTTCAAGATTGGGGCCACCGAGCCA 752
||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||
Sbjct 585 AAGGCAGGAGCCCGGTTTGCAAAATGGCGTGCAGTCCTCAAGATTGGGGCCACCGAGCCA 644
Query 753 AGCGTTCTCTCCATCCAAGAGGACGCCA-GGGTGCTAGCCCGCTATGCCATCATCTGCCA 811
|||| ||||| ||||||||| |||||| ||| |||||||||||||||||||||||||||
Sbjct 645 AGCGAGCTCTCTATCCAAGAGAACGCCAAGGG-GCTAGCCCGCTATGCCATCATCTGCCA 703
Query 812 GGAGAATGGACTTGTCCCGATCGTCGAGCCAGAGGTGCTGACAGGTGGGAGCCACGACAT 871
|||||| ||||| ||||||||||||||||||||||| ||||| | |||||||| |||||
Sbjct 704 GGAGAACGGACTGGTCCCGATCGTCGAGCCAGAGGTACTGACCGACGGGAGCCATGACAT 763
Query 872 CAAGAAATGTGCGGCGGTGACTGAGACGGTTCTTGCTGCCGTGTTCAAGGCCTTGAACTA 931
||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||||||| |
Sbjct 764 CAAGAAATGTGCGGCCGTGACGGAGACAGTTCTTGCTGCCGTGTACAAGGCCTTGAACGA 823
Query 932 CCACCATGTCCTCCTCGAAGGCACTCTGCTTAAACCTAACATGGTCACTCCCGGCTCCGA 991
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 824 CCACCATGTCCTCCTCGAAGGCACTCTGCTTAAACCGAACATGGTCACTCCCGGCTCTGA 883
Query 992 CAGCCCAAAGGTTGCACCGGAACTAATTGCGGAATACACGGTGACTGCTCTGCGCCGCAC 1051
|||||||||||||||| | ||| | || ||||||||||| ||||||||||||||||||||
Sbjct 884 CAGCCCAAAGGTTGCAGCTGAAGTGATAGCGGAATACACAGTGACTGCTCTGCGCCGCAC 943
Query 1052 AGTCCCACCAGCTATTCCGGGAATCGTGTTCCTCTCAGGCATACAGCGCGAAGAGCAAGC 1111
|||||||||||| |||| ||||||||||||||||||||| |||| | |||||| ||||
Sbjct 944 AGTCCCACCAGCGGTTCCAGGAATCGTGTTCCTCTCAGGCGGACAGAGTGAAGAGGAAGC 1003
Query 1112 GACACTAAATCTAAACGCAATGAACAAGCTTGATGTGTTGAAGCCATGGACGCTCACTTT 1171
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1004 AACACTAAATCTGAACGCAATGAACAAGCTTGATGTATTGAAGCCATGGACGCTGACTTT 1063
Query 1172 CTCTTTTGGCGGAGCCCTCCAGCAAAGTGCTATCAAGGCTTGGGCCGGTAAGCCCGAGAA 1231
|||||||||| |||||||||| ||||| || ||||||||||||| |||||| |||||||
Sbjct 1064 CTCTTTTGGCCGAGCCCTCCAACAAAGCACTCTCAAGGCTTGGGCAGGTAAGACCGAGAA 1123
Query 1232 CGTAGCCAAAGCTCAGGCCAAGTTCCTGACCAGGTGCAAGGCTAACAAGGACGCTACCCT 1291
||||||||||||||| |||| |||||||| |||||||||| |||| ||| ||||||||
Sbjct 1124 CGTAGCCAAAGCTCAAGCCACTTTCCTGACAAGGTGCAAGGGTAACTCGGATGCTACCCT 1183
Query 1292 CGGGAAATACACCGGCTGGGCTTCTGGTGACTCGGCCGCTT-TCGAGAACTTGGT-TGTG 1349
|||||||||||||||| ||||||| |||||||||||||| | | |||| |||| | || |
Sbjct 1184 CGGGAAATACACCGGCGGGGCTTCAGGTGACTCGGCCGCCTCT-GAGAGCTTG-TATGAG 1241
Query 1350 ATAGGATACAGGTACTAGGATCCTTTGAGAACGGGCGTTTGCCTTTGATGCGGTTTGAGT 1409
| |||||||| ||| ||||| | ||| | | |||| || | |||| || |||||||| |
Sbjct 1242 AAAGGATACAAGTATTAGGAGCGTTTAATA-CGGGTGTC-GTCTTTTATACGGTTTGAAT 1299
Query 1410 AGATATCTAATGTTTCGTGTGTGTTTTAACTGTTTGAATGTT 1451
| || || ||||||||||| | |||| |||||||| ||||||
Sbjct 1300 ATATGTCAAATGTTTCGTGGGCGTTT-AACTGTTTAAATGTT 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58049533380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5