BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26530.1
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492157 jgi|Araly1|492157|fgenesh2_kg.7__1590__AT4G26530.2 2158 0.0
Ahg492160 jgi|Araly1|492160|fgenesh2_kg.7__1593__AT4G26520.1 1524 0.0
> Ahg492157 jgi|Araly1|492157|fgenesh2_kg.7__1590__AT4G26530.2
Length=1422
Score = 2158 bits (1168), Expect = 0.0
Identities = 1306/1373 (95%), Gaps = 8/1373 (1%)
Strand=Plus/Plus
Query 1 TTGGTTGCCATTTGGTTGTGTAGAAGCAATCACCCATTTGCTTTATC-----CG-AGGTA 54
|||||||||||||||| |||||||||||||||| ||||||||||||| | |||||
Sbjct 52 TTGGTTGCCATTTGGTAGTGTAGAAGCAATCACTCATTTGCTTTATCGGAGTTGCAGGTA 111
Query 55 CTTAAGGCTTTGTCTTGGCATCCTCGTCCTCTTCAGCAAAACTCGTCTCTCTTGCACTCC 114
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 112 CTTAAGGCTTTGTCTTGGCTTCCTCGTCCTCTTCAGTTAAACTCGTCTCTCTTGCACTCC 171
Query 115 AAAAAGCAACCATGTCTGCTTTTGTCGGCAAATACGCAGATGAGCTGATAAAGACGGCTA 174
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 172 GAAAAGCAACCATGTCTGCTTTTGTCGGCAAATACGCAGATGAGCTGATTAAGACGGCTA 231
Query 175 AGTACATTGCCACACCGGGAAAGGGCATTTTGGCAGCAGACGAGAGCACGGGAACTATTG 234
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 232 AGTACATTGCAACACCGGGAAAGGGCATTTTGGCAGCAGACGAGAGCACAGGAACCATCG 291
Query 235 GGAAACGATTCGCCAGCATCAATGTTGAGAACATTGAGTCCAACCGCCAAGCTCTCCGTG 294
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 292 GGAAACGATTCGCCAGCATCAATGTCGAGAACGTTGAGTCCAACCGCCAAGCTCTCCGTG 351
Query 295 AGCTCCTCTTCACGTCCCCTGGCACTTTCCCTTGCCTCTCCGGTGTTATCCTCTTCGAGG 354
||||||||||||| ||||||||| |||||||||||||||| ||||||||||| || ||||
Sbjct 352 AGCTCCTCTTCACTTCCCCTGGCGCTTTCCCTTGCCTCTCTGGTGTTATCCTTTTTGAGG 411
Query 355 AAACCCTCTACCAGAAAACCACGGATGGCAAACCCTTCGTTGAGCTCCTCATGGAAAACG 414
|||||||||||||||||||| | |||||||||||||| ||||| ||||||||||| ||||
Sbjct 412 AAACCCTCTACCAGAAAACCTCTGATGGCAAACCCTTTGTTGATCTCCTCATGGAGAACG 471
Query 415 GAGTTATCCCTGGAATCAAAGTGGACAAGGGTGTGGTTGATCTAGCAGGAACCAATGGCG 474
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 472 GAGTTATCCCTGGAATCAAAGTGGACAAGGGTGTGGTTGATCTAGCAGGGACCAACGGCG 531
Query 475 AGACCACTACTCAGGGTCTAGATTCACTTGGTGCACGTTGCCAGGAGTATTACAAGGCAG 534
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 532 AGACCACTACTCAGGGTCTAGATTCGCTTGGTGCACGTTGCCAGGAGTATTACAAGGCAG 591
Query 535 GAGCTCGGTTTGCAAAATGGCGTGCAGTCCTCAAGATTGGGGCCACCGAGCCAAGCGAGC 594
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GAGCCCGGTTTGCAAAATGGCGTGCAGTCCTCAAGATTGGGGCCACCGAGCCAAGCGAGC 651
Query 595 TCTCTATCCAAGAGAACGCCAAGGGGCTAGCCCGCTATGCCATCATCTGCCAGGAGAATG 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 652 TCTCTATCCAAGAGAACGCCAAGGGGCTAGCCCGCTATGCCATCATCTGCCAGGAGAACG 711
Query 655 GACTCGTCCCAATCGTCGAGCCAGAGGTACTGACCGACGGGAGCCATGACATCAAGAAAT 714
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GACTGGTCCCGATCGTCGAGCCAGAGGTACTGACCGACGGGAGCCATGACATCAAGAAAT 771
Query 715 GTGCAGCGGTGACCGAGACCGTTCTTGCTGCCGTGTACAAGGCCTTGAACGACCACCATG 774
|||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GTGCGGCCGTGACGGAGACAGTTCTTGCTGCCGTGTACAAGGCCTTGAACGACCACCATG 831
Query 775 TCCTCCTCGAAGGCACTCTGCTTAAACCGAACATGGTCACTCCCGGCTCTGACAGCCCAA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TCCTCCTCGAAGGCACTCTGCTTAAACCGAACATGGTCACTCCCGGCTCTGACAGCCCAA 891
Query 835 AGGTTGCACCGGAAGTGATAGCGGAATACACAGTGACTGCTCTGCGCCGCACAGTCCCAC 894
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 AGGTTGCAGCTGAAGTGATAGCGGAATACACAGTGACTGCTCTGCGCCGCACAGTCCCAC 951
Query 895 CTGCAGTTCCAGGAATCGTGTTCCTCTCAGGCGGACAGAGTGAAGAGGAAGCAACACTAA 954
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CAGCGGTTCCAGGAATCGTGTTCCTCTCAGGCGGACAGAGTGAAGAGGAAGCAACACTAA 1011
Query 955 ATCTGAACGCAATGAACAAGCTCGATGTGTTGAAGCCATGGACTCTCACTTTCTCATTTG 1014
|||||||||||||||||||||| ||||| |||||||||||||| || |||||||| ||||
Sbjct 1012 ATCTGAACGCAATGAACAAGCTTGATGTATTGAAGCCATGGACGCTGACTTTCTCTTTTG 1071
Query 1015 GCCGAGCCCTCCAACAAAGCACTCTCAAGGCTTGGGCAGGTAAGACAGAGAATGTAGCCA 1074
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1072 GCCGAGCCCTCCAACAAAGCACTCTCAAGGCTTGGGCAGGTAAGACCGAGAACGTAGCCA 1131
Query 1075 AAGCTCAGGCCACTTTCCTGACCAGGTGCAAGGGTAACTCGGACGCTACCCTCGGGAAAT 1134
||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1132 AAGCTCAAGCCACTTTCCTGACAAGGTGCAAGGGTAACTCGGATGCTACCCTCGGGAAAT 1191
Query 1135 ACACCGGCGGGGCTTCTGGTGACTCGGCCGCCTCTGAGAGCTTGTATGAGGAAGGATACA 1194
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1192 ACACCGGCGGGGCTTCAGGTGACTCGGCCGCCTCTGAGAGCTTGTATGAGAAAGGATACA 1251
Query 1195 AGTATTAGGAGCGTTTAAATACGGGTGTCGCCTTTTATACGATTTGAATATATGTCAAAT 1254
|||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1252 AGTATTAGGAGCGTTTAA-TACGGGTGTCGTCTTTTATACGGTTTGAATATATGTCAAAT 1310
Query 1255 GTTTCGTAGGCGTTTAACTGTTTAAATTTTTATCGATTTGGTTTAGCGTCTGTGTAATGT 1314
||||||| ||||||||||||||||||| |||||||||||||||||| | |||||||||||
Sbjct 1311 GTTTCGTGGGCGTTTAACTGTTTAAATGTTTATCGATTTGGTTTAGTGACTGTGTAATGT 1370
Query 1315 TCTTAAACTGTGTTGTGTTTTTTGTGATGGTTTCTATAATATTTTCGCGCCAT 1367
|||||||||||||||||||||| |||||| |||||||| ||||||||||||||
Sbjct 1371 TCTTAAACTGTGTTGTGTTTTT-GTGATGATTTCTATAGTATTTTCGCGCCAT 1422
> Ahg492160 jgi|Araly1|492160|fgenesh2_kg.7__1593__AT4G26520.1
Length=1397
Score = 1524 bits (825), Expect = 0.0
Identities = 1068/1186 (90%), Gaps = 14/1186 (1%)
Strand=Plus/Plus
Query 104 TCTT-GCACTCCAAAAAGCAACCATGTCTGCTTTTGTCGGCAAATACGCAGATGAGCTGA 162
|||| ||| |||||| |||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 136 TCTTGGCA-TCCAAACAGCAACGATGTCTGCTTTTGTTGGCAAATACGCAGATGAGCTGA 194
Query 163 TAAAGACGGCTAAGTACATTGCCACACCGGGAAAGGGCATTTTGGCAGCAGACGAGAGCA 222
| |||||||| ||||||||||| || ||||||| |||||||||||| |||||||||||||
Sbjct 195 TCAAGACGGCCAAGTACATTGCAACGCCGGGAAGGGGCATTTTGGCGGCAGACGAGAGCA 254
Query 223 CGGGAACTATTGGGAAACGATTCGCCAGCATCAATGTTGAGAACATTGAGTCCAACCGCC 282
| | ||| || |||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 255 CAGAAACCATCGGGAAACGATTCGCTGGAATCAATGTTGAGAACATTGTGTCCAACCGCC 314
Query 283 AAGCTCT-CCGTGAGCTCCTCTTCACGTCCCCTGGCACTTTCCCTTGCCTCTCCGGTGTT 341
||||| | ||| |||||||||||||| |||||||||| || |||||||||||| ||||||
Sbjct 315 AAGCT-TACCGAGAGCTCCTCTTCACTTCCCCTGGCAGTTACCCTTGCCTCTCTGGTGTT 373
Query 342 ATCCTCTTCGAGGAAACCCTCTACCAGAAAACCACGGATGGCAAACCCTTCGTTGAGCTC 401
|| |||||||||||||||||||||||||||||| | ||||| ||||||||||| || |||
Sbjct 374 ATACTCTTCGAGGAAACCCTCTACCAGAAAACCTCTGATGGAAAACCCTTCGTCGATCTC 433
Query 402 CTCATGGAAAACGGAGTTATCCCTGGAATCAAAGTGGACAAGGGTGTGGTTGATCTAGCA 461
|||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 434 CTCATGGAGAACGGCGTTATCCCCGGAATCAAAGTGGACAAGGGTTTGGTTGATCTAGCA 493
Query 462 GGAACCAATGGCGAGACCACTACTCAGGGTCTAGATTCACTTGGTGCACGTTGCCAGGAG 521
|||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 494 GGAACCAACGGCGAGACCACTACTCAGGGTCTAGACTCGCTTGGTGCACGGTGCCAGGAG 553
Query 522 TATTACAAGGCAGGAGCTCGGTTTGCAAAATGGCGTGCAGTCCTCAAGATTGGGGCCACC 581
||||||||||||||||| |||||||| |||||||||||| || ||||||||||||||||
Sbjct 554 TATTACAAGGCAGGAGCCCGGTTTGCTAAATGGCGTGCATTCTTCAAGATTGGGGCCACT 613
Query 582 GAGCCAAGCGAGCTCTCTATCCAAGAGAACGCCAAGGGGCTAGCCCGCTATGCCATCATC 641
|||||||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 614 GAGCCAAGCGCTCTCTCGATCCAAGAGGACGCCAAGGTGCTAGCCCGCTATGCCATCATC 673
Query 642 TGCCAGGAGAATGGACTCGTCCCAATCGTCGAGCCAGAGGTACTGACCGACGGGAGCCAT 701
||||||||||| ||||| ||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 674 TGCCAGGAGAACGGACTTGTCCCGATCGTCGAGCCAGAGGTGCTGACCGGTGGGAGCCAC 733
Query 702 GACATCAAGAAATGTGCAGCGGTGACCGAGACCGTTCTTGCTGCCGTGTACAAGGCCTTG 761
||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||
Sbjct 734 GACATCAAGAAATGTGCGGCGGTGACCGAGACGGTTCTTGCTGCCGTGTTCAAGGCCTTG 793
Query 762 AACGACCACCATGTCCTCCTCGAAGGCACTCTGCTTAAACCGAACATGGTCACTCCCGGC 821
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 794 AACGACCACCATGTCCTCCTCGAAGGCACTCTGCTTAAACCTAACATGGTCACTCCCGGC 853
Query 822 TCTGACAGCCCAAAGGTTGCACCGGAAGTGATAGCGGAATACACAGTGACTGCTCTGCGC 881
|| |||||||||||||||||||||||||| || || |||||||| |||||||||||||||
Sbjct 854 TCCGACAGCCCAAAGGTTGCACCGGAAGTAATCGCAGAATACACGGTGACTGCTCTGCGC 913
Query 882 CGCACAGTCCCACCTGC-AGTTCCAGGAATCGTGTTCCTCTCAGGCGGACAGAGTGAAGA 940
|||||||||||||| || | |||| |||||||||||||||||||||| |||| | |||||
Sbjct 914 CGCACAGTCCCACCAGCTA-TTCCGGGAATCGTGTTCCTCTCAGGCGTACAGCGGGAAGA 972
Query 941 GGAAGCAACACTAAATCTGAACGCAATGAACAAGCTCGATGTGTTGAAGCCATGGACTCT 1000
| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 973 GCAAGCGACACTAAATCTAAACGCAATGAACAAGCTTGATGTGTTGAAGCCATGGACGCT 1032
Query 1001 CACTTTCTCATTTGGCCGAGCCCTCCAACAAAGCACTCTCAAGGCTTGGGCAGGTAAGAC 1060
||||||||| |||||| |||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 1033 CACTTTCTCTTTTGGCGGAGCCCTCCAGCAAAGCGCTCTCAAGGCTTGGGCCGGTAAGAC 1092
Query 1061 AGAGAATGTAGCCAAAGCTCAGGCCACTTTCCTGACCAGGTGCAAGGGTAACTCGGACGC 1120
||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||| ||
Sbjct 1093 CGAGAACGTAGCCAAAGCTCAAGCCAAGTTCCTGACCAGGTGCAAGGCTAACTCGGATGC 1152
Query 1121 TACCCTCGGGAAATACACCGGCGGGGCTTCTGGTGACTCGGCCGCCTCTGAGAGCTTG-T 1179
|||||||||||||||||||||| |||||||||||||||| |||||||| |||| |||| |
Sbjct 1153 TACCCTCGGGAAATACACCGGCTGGGCTTCTGGTGACTCAGCCGCCTCCGAGAACTTGGT 1212
Query 1180 ATGAGGA-AGGATACAAGTATTAGGAGCGTTTAA-ATACGGGTGT-CGCCTTTTATACGA 1236
|| | | |||||||| ||| ||||| |||| | | ||||| || ||||||| || ||
Sbjct 1213 -TGTG-ATAGGATACAGGTACTAGGATTGTTTGAGA-ACGGGCGTTCGCCTTTGATGCGG 1269
Query 1237 TTTGAATATATGTCAAATGTTTCGTAGGCGTT-TAACTGTTTAAAT 1281
||||| |||||||| ||| |||||| || ||| ||||||||| |||
Sbjct 1270 TTTGAGTATATGTCTAATATTTCGTTGGTGTTGTAACTGTTTGAAT 1315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51351569199
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5