BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26540.1
Length=3511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945418 jgi|Araly1|945418|scaffold_701647.1 4950 0.0
Ahg917292 jgi|Araly1|917292|Al_scaffold_0008_2043 2078 0.0
> Ahg945418 jgi|Araly1|945418|scaffold_701647.1
Length=3324
Score = 4950 bits (2680), Expect = 0.0
Identities = 3120/3335 (94%), Gaps = 20/3335 (1%)
Strand=Plus/Plus
Query 57 TTCTTCTTCCTCATCTTCGTCTTCTCCGATGCCACCAAATATCTATAGACTCTCCTTCTT 116
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTCTTCCTCATCTTCATCTTCTCCGATGCCACCAAATATCTATAGACTCTCCTTCTT 60
Query 117 CTCATCCCTACTCTGTTTCTTCTTCATCCCCTG--T-TTCTCTCTCGACCAACAAGGTCA 173
|| |||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||
Sbjct 61 CTTATCCCTACTCTGTTTCTTCTTCATTCCCTGTTTCTTCTCTCTCGACGAACAAGGTCA 120
Query 174 AGCTCTCTTGTCATGGAAGTCTCAACTGAACATCTCCGGCGACGCTTTTTCCTCCTGGCA 233
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCTCTCTTGTCATGGAAGTCCCAACTGAACATCTCCGGCGACGCTTTTTCCTCCTGGCA 180
Query 234 CGTCGCCGACACATCTCCCTGCAATTGGGTCGGCGTAAAATGTAACCGTAGAGGTGAAGT 293
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCGCCGACACATCTCCCTGCAACTGGGTCGGCGTAAAATGTAACCGTAGAGGTGAAGT 240
Query 294 TTCGGAGATACAGCTCAAAGGTATGGACTTGCAAGGTTCTCTGCCGGTGACTAGTCTCCG 353
|||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 241 TTCGGAGATACAACTCAAAGGCATGGACTTGCAAGGTTCTCTGCCGGTGACGAGTCTCCG 300
Query 354 GAGCCTCAAGTCTCTTACTTCCCTCACTTTATCTTCACTGAATCTCACCGGAGTAATCCC 413
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 301 GAGCCTCAAGTCTCTTACTTCCCTCACTTTATCTTCACTCAATCTTACCGGAGTAATCCC 360
Query 414 CAAGGAGATCGGAGAC-TTCACGGAGCTTGAGTTACTCGATTTGTCGGATAATTCTCTCT 472
||||||||| |||||| ||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 361 CAAGGAGATAGGAGACTTTC-TTGAGCTTGAATTACTCGATTTATCGGATAATTCTCTCT 419
Query 473 CCGGTGATATCCCTGTGGAAATCTTCAGGCTCAAGAAACTCAAGACTCTGTCTCTGAACA 532
|||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 420 CCGGCGATATCCCTGTGGAAATCTTCAGGCTCAAGAAACTCAAAACTCTGTCTTTGAACA 479
Query 533 CTAACAATCTAGAAGGTCATATTCCGATGGAGATTGGGAATCTTTCGGGTCTCGTAGAGC 592
|||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||||
Sbjct 480 CTAACAATCTCGAAGGTCGGATTCCGATGGAGATTGGGAATCTTTCCGGTCTCCTAGAGC 539
Query 593 TTATGCTTTTCGACAACAAGCTATCCGGAGAGATCCCAAGGAGTATCGGAGAGCTCAAGA 652
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 540 TTATGCTTTTCGATAACAAGCTATCCGGAGAGATCCCGAGGAGTATCGGAGAGCTCAAGA 599
Query 653 ATCTACAAGTCTTACGTGCTGGTGGGAACAAGAATCTAAGAGGTGAGCTTCCTTGGGAGA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATCTACAAGTCTTACGTGCTGGTGGGAACAAGAATCTAAGAGGTGAGCTTCCTTGGGAGA 659
Query 713 TAGGTAACTGCGAGAATCTTGTAATGCTTGGTCTCGCTGAGACTAGTCTCTCCGGGAAAC 772
|||| || |||||||| || ||||||||||||||||||||||||||||||||||| | ||
Sbjct 660 TAGGAAATTGCGAGAACCTAGTAATGCTTGGTCTCGCTGAGACTAGTCTCTCCGGTAGAC 719
Query 773 TTCCGGCGTCGATTGGAAACCTGAAACGTGTTCAGACAATAGCAATTTACACGTCACTCT 832
||||||||||| | |||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 720 TTCCGGCGTCGGTAGGAAACTTGAAACGTGTTCAGACAATAGCAATTTATACGTCACTCT 779
Query 833 TGTCTGGTCCAATTCCGGATGAGATTGGATACTGCACAGAGCTCCAAAACCTCTACTTGT 892
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 780 TGTCTGGTCCAATTCCGGATGAGATTGGATACTGTACGGAGCTCCAAAACCTCTACTTGT 839
Query 893 ATCAGAATTCAATCTCAGGATCGATCCCTACCACCATTGGAGGTTTAAAGAAGCTGCAGA 952
| ||||| || ||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 840 ACCAGAACTCGATCTCCGGATCGATTCCTAACACCATTGGAGGTTTAAAGAAGCTGCAGA 899
Query 953 GTCTACTTTTATGGCAGAACAATCTCGTTGGGAAAATCCCAACCGAGCTTGGGAACTGTC 1012
| ||||| ||||||||||||||||||||||||||||| || | ||||||||||| ||||
Sbjct 900 GCCTACTCTTATGGCAGAACAATCTCGTTGGGAAAATGCCTTCAGAGCTTGGGAATTGTC 959
Query 1013 CCGAGCTCTGGCTTATCGATTTTTCCGAGAATCTCCTCACCGGGACCATCCCAAGGAGCT 1072
|||| ||||||||||||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct 960 CCGAACTCTGGCTTATCGATTTTTCCGAGAATCTTCTCACCGGGAACATCCCGAGGAGCT 1019
Query 1073 TCGGAAAACTTGAGAATCTACAAGAGCTTCAGCTGAGTGTAAACCAGATCTCAGGAACAA 1132
|||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 1020 TCGGGAAACTTGAGAATCTACAAGAGCTTCAACTGAGCGTAAACCAAATCTCAGGAACAA 1079
Query 1133 TCCCTGAAGAGCTAACGAATTGCACGAAGCTGACGCATTTAGAGATCGACAATAATCTCA 1192
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 1080 TCCCTGAAGAGCTAGCGAATTGCACGAAGCTTACGCATTTAGAGATCGACAATAACCTTA 1139
Query 1193 TCACAGGAGAGATTCCGTCATTGATGAGTAACCTAAGAAGCTTAACCATGTTCTTCGCAT 1252
| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1140 TTACCGGAGAGATTCCGTCATTGATGAGTAACCTAAGAAGCTTAACGATGTTTTTCGCGT 1199
Query 1253 GGCAGAACAAGTTAACTGGAAACATCCCTCAAAGTCTCTCCCAGTGTCGTGAGCTTCAAG 1312
|||||||||||||||| |||| |||||| || ||||||||||||||||||||||||||||
Sbjct 1200 GGCAGAACAAGTTAACCGGAAGCATCCCACAGAGTCTCTCCCAGTGTCGTGAGCTTCAAG 1259
Query 1313 CCATCGATCTCTCTTACAACAGTCTCTCTGGCTCCATCCCAAAAGAGATATTCGGGTTAC 1372
||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||
Sbjct 1260 CCATCGATCTCTCTTACAACAGTCTCTCTGGTTCTATCCCAAAAGAGATTTTTGGGTTAC 1319
Query 1373 GAAACCTCACGAAGCTTCTTCTTCTCTCCAATGATTTGTCGGGTTTCATACCTCCGGATA 1432
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1320 GAAACCTCACGAAGCTTCTTCTTCTCTCCAATGATTTGTCAGGTTTCATACCGCCGGATA 1379
Query 1433 TTGGAAACTGTACGAATCTTTACCGGTTAAGACTCAACGGTAACAG-ACTCGCCGGAAGT 1491
|||||||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||
Sbjct 1380 TTGGAAACTGTACGAATCTTTACCGGTTGAGACTCAACGGAAACAGGA-TCGCCGGAAGT 1438
Query 1492 ATCCCGTCGGAAATCGGGAATCTGAAAAATCTCAACTTTGTTGATATAAGTGAGAACCGT 1551
||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1439 ATCCCGTCGGATATGGGGAACCTGAAAAATCTCAACTTTGTTGATATAAGCGAGAACCGT 1498
Query 1552 CTCGTCGGGTCAATCCCTCCGGCGATCTCTGGTTGTGAAAGCCTCGAGTTTCTCGATCTT 1611
||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1499 CTCGTCGGGACAATCCCTCCGGCGATCTATGGTTGTAAAAGCCTCGAGTTTCTCGATCTT 1558
Query 1612 CACACGAATAGTCTCTCCGGTTCATTGCTCGGTACTACACTCCCAAAGAGCTTGAAGTTC 1671
||| |||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 1559 CACTCGAACAGTCTCTCCGGTTCATTGCTCGG--C-ACACTCCCAAAAAGCTTGAAGTTC 1615
Query 1672 ATCGATTTCTCCGATAA-TGCTCTGTCCAGTACTCTGCCTCCGGGAATAGGATTGTTGAC 1730
|||||||| || ||||| | ||||||| || ||||||||||||||||||||||||||||
Sbjct 1616 ATCGATTTTTCTGATAACT-CTCTGTCTGGTCCTCTGCCTCCGGGAATAGGATTGTTGAC 1674
Query 1731 AGAGCTTACAAAGCTCAATCTCGCCAAGAACAGATTATCCGGCGAAATCCCTAGAGAAAT 1790
||| || || ||||||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 1675 AGAACTAACGAAGCTCAATCTCGCCAAGAACCGATTCTCCGGCGAAATCCCTAGACAAAT 1734
Query 1791 CTCCACTTGTCGGAGTCTACAGCTTCTCAATCTCGGCGAAAATGACTTT-TCTGGTGAAA 1849
||||||||||||||||||||||||||| |||||||||||||||| | || || |||||||
Sbjct 1735 CTCCACTTGTCGGAGTCTACAGCTTCTTAATCTCGGCGAAAATG-CATTCTCCGGTGAAA 1793
Query 1850 TCCCTGACGAATTGGGTCAAATCCCGTCTCTGGCGATATCTCTTAATCTCAGCTGCAATA 1909
|||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1794 TCCCAGACGAATTGGGTCAAATCCCGTCTCTGGCAATCTCTCTTAATCTTAGCTGCAATG 1853
Query 1910 GGTTCGTCGGAGAAATCCCGTCTAGATTCTCCGACTTGAAAAACCTTGGAGTGCTCGACG 1969
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1854 GGTTCGTCGGAGAAATACCGTCGAGATTCTCCGACTTGAAAAACCTTGGAGTGCTAGACA 1913
Query 1970 TATCTCACAACCAACTCACCGGAAACTTAAACGTTTTAACGGATTTGCAAAACCTCGTCT 2029
| |||||||||||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 1914 TCTCTCACAACCAACTCACCGGAAACTTGATGGTTTTAACGGATTTGCAAAATCTCGTCT 1973
Query 2030 CTCTCAACATCTCCTACAACGATTTCTCCGGCGATTTACCCAACACGCCCTTTTTCCGGC 2089
|||||||| |||||| ||| |||||||||||||||||||| || || ||||||||||||
Sbjct 1974 CTCTCAACGTCTCCTTCAATGATTTCTCCGGCGATTTACCAAATACTCCCTTTTTCCGGA 2033
Query 2090 GACTTCCACTTTCTGATCTCGCCTCAAACAGAGGGCTTTACATCTCGAACGCAATCTCGA 2149
|||||||||| ||||||||||||||||||| |||||||||||| || || ||||| ||||
Sbjct 2034 GACTTCCACTCTCTGATCTCGCCTCAAACAAAGGGCTTTACATTTCTAATGCAATTTCGA 2093
Query 2150 CCCGACCCGACCCGACGACCAGGAACAGCTCCGTCGTTAGATTGACTATTTTAATTCTCG 2209
||||| | |||||||||||| ||||||| |||||||||| |||||| |||||||||||||
Sbjct 2094 CCCGATCTGACCCGACGACCCGGAACAGTTCCGTCGTTAAATTGACCATTTTAATTCTCG 2153
Query 2210 TCGTCGTCACTGCCGTACTTGTTCTCATGGCGGTTTACACTCTAGTCCGGGCAAGAGCCG 2269
||||||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||
Sbjct 2154 TCGTCGTCACTGCCGTACTCGTGCTCCTGGCGGTTTACACTCTAGTCCGGGCACGAGCCG 2213
Query 2270 CCGGAAAACAACTCCTCGGAGAAGAAATAGATTCGTGGGAAGTGACGCTTTACCAAAAAC 2329
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2214 CCGGAAAACAGCTCCTCGGAGAAGATATAGATTCGTGGGAAGTGACGCTTTACCAAAAAC 2273
Query 2330 TCGATTTTTCAATCGACGACATTGTTAAGAATCTGACGTCAGCAAACGTGATCGGAACCG 2389
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2274 TCGATTTTTCAATCGACGACATCGTTAAGAATCTGACGTCAGCAAACGTGATCGGAACCG 2333
Query 2390 GAAGCTCCGGTGTGGTTTACCGTATAACGATTCCCTCCGGCGAGTCACTCGCGGTGAAGA 2449
|||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 2334 GAAGCTCCGGTGTGGTATACCGTATAACGATTCCCTCCGGCGAGTCTCTGGCGGTGAAGA 2393
Query 2450 AAATGTGGTCAAAGGAAGAGAGTGGTGCGTTTAACTCCGAGATTAAAACTCTAGGATCGA 2509
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2394 AAATGTGGTCGAAGGAAGAGAGTGGTGCGTTTAATTCCGAGATCAAAACTCTAGGATCGA 2453
Query 2510 TTCGTCACAGAAACATCGTTCGTCTTCTTGGTTGGTGCTCTAATCGGAATCTGAAACTCT 2569
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2454 TTCGTCACAGGAACATTGTTCGTCTTCTTGGTTGGTGCTCTAATCGGAATCTGAAACTCC 2513
Query 2570 TGTTCTACGACTATCTCCCTAACGGTAGCTTGAGTTCTCGGCTTCACGGCGCCGGAAAAG 2629
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2514 TGTTCTACGACTATCTCCCTAACGGTAGCCTGAGTTCTCGGCTTCACGGCGCCGGAAAAG 2573
Query 2630 GAGGATGTGTTGATTGGGAGGCGCGATACGACGTCGTTCTTGGTGTGGCCCATGCACTTG 2689
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2574 GAGGAGGTGTTGATTGGGAGGCTCGATACGACGTCGTTCTTGGTGTGGCCCATGCACTTG 2633
Query 2690 CTTATCTCCACCATGATTGTCTCCCCACAATTATACATGGTGACGTTAAAGCTATGAATG 2749
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2634 CTTATCTCCACCATGATTGTCTCCCCACAATTATACACGGTGACGTTAAAGCTATGAATG 2693
Query 2750 TCTTATTGGGTCCTCACTTTGAACCCTACTTAGCTGATTTCGGTTTAGCTAGAACCATCT 2809
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 2694 TCTTATTGGGTCCTCACTTAGAACCCTACTTAGCTGATTTCGGTTTAGCTAGAACCGTTT 2753
Query 2810 CCGGTTATCCAAATACCGGAATCGATTTAG-CGAAACCCACCAATCGGCCTCCGATGGCT 2868
|||||||||||||||| ||||| ||||| | | |||||||||||||||||||| |||||
Sbjct 2754 CCGGTTATCCAAATACTGGAATTGATTT-GTCAAAACCCACCAATCGGCCTCCCTTGGCT 2812
Query 2869 GGCTCCTATGGTTACATGGCTCCAGAACATGCTTCGATGCAACGTATTACCGAGAAGAGC 2928
|| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2813 GGTTCATATGGTTACATGGCTCCGGAACATGCTTCGATGCAACGTATAACCGAGAAGAGC 2872
Query 2929 GATGTTTATAGTTACGGGGTGGTATTGTTAGAGGTTTTAACCGGAAAGCATCCGTTAGAT 2988
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 2873 GATGTTTATAGTTACGGAGTGGTATTGTTAGAGGTTCTAACCGGAAAGCATCCGTTAGAT 2932
Query 2989 CCGGATCTACCAGGAGGTGCACATTTGGTTAAGTGGGTGAGAGATCACTTGGCTGAGAAA 3048
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2933 CCGGATCTACCAGGAGGTTCACATTTGGTTAAGTGGGTGAGAGATCACTTGGCTGAGAAA 2992
Query 3049 AAAGATCCTAGCAGGCTTCTTGA-TCCGAGACTCGATGGACGGACTGACTCGATAATGCA 3107
|||||||| |||| ||||||||| || ||||||| |||| ||||||||||||||||||||
Sbjct 2993 AAAGATCCGAGCATGCTTCTTGACTC-GAGACTCAATGGGCGGACTGACTCGATAATGCA 3051
Query 3108 TGAGATGCTTCAAACTCTTGCGGTTGCGTTCTTGTGTGTTAGCAACAAGGCAAACGAACG 3167
|||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 3052 CGAGATGCTTCAAACTCTTGCGGTTGCGTTCCTCTGTGTGAGCAACAAGGCAAACGAACG 3111
Query 3168 ACCTTTAATGAAAGATGTTGTGGCAATGCTCACAGAAATAAGGCATATTGATGTTGGAAG 3227
||||| |||||||||||||||||||||||||| || |||||||| |||||||||||| |
Sbjct 3112 GCCTTTGATGAAAGATGTTGTGGCAATGCTCACGGAGATAAGGCACATTGATGTTGGACG 3171
Query 3228 ATCGGAGACAGAGAAGATCAAAGCTGGTGGTTGCGGAAGCAAAGAGCCACAACAATTTAT 3287
||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 3172 ATCGGAGACCGATAAGATCAAAACTGGTGGTTGCGGAAGCAAAGAGCCACAACAATTAAT 3231
Query 3288 GTCGAATGAGAAAATCATCAATTCTCACGGTTCGTCTAATTGTTCATTTGCGTTTTCGGA 3347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3232 GTCGAATGAGAAAATCATCAATTCTCACGGTTCGTCTAATTGTTCATTTGCGTTTTCGGA 3291
Query 3348 TGACTCCGTTTAAAAAAGGAACAAGGTAACAAATG 3382
||||||||| ||||||| |||| | ||| |||||
Sbjct 3292 TGACTCCGTATAAAAAAAAAACA-G-TAAAAAATG 3324
> Ahg917292 jgi|Araly1|917292|Al_scaffold_0008_2043
Length=3273
Score = 2078 bits (1125), Expect = 0.0
Identities = 2625/3333 (79%), Gaps = 168/3333 (5%)
Strand=Plus/Plus
Query 106 CTC-TCCTTCTTCTCATCCCTACTCTG-TTTCTTCTTCATCCCCTGTTTCTCTC-TCGAC 162
||| |||||| ||| || || ||||| ||||||| ||| |||||||||||| | | |||
Sbjct 31 CTCTTCCTTC-TCT-TTCACTCCTCTGTTTTCTTCATCACCCCCTGTTTCTC-CATAGAC 87
Query 163 CAACAAGGTCAAGCTCTCTTGTCATGGAAGTCTCAACTGAACATCTCCGGCGACGCTTTT 222
||||||||| ||||||| | |||||||| ||||| | ||||||||||| ||||||||
Sbjct 88 GAACAAGGTCTAGCTCTCCTCTCATGGAAATCTCAGTTAAACATCTCCGGAGACGCTTTA 147
Query 223 TCCTCCTGGCACGTCGCCGACA-C-ATCTCCCTG-CAATTGGGTCGGCGTAAAATGTAAC 279
|| || ||| | | | |||| | | | ||| || ||| |||||||| | | ||| ||
Sbjct 148 TCTTCTTGGAAAGCCTCCGA-ATCGA-ATCCTTGTCAA-TGGGTCGGAATCAGATGCAA- 203
Query 280 CG-TAGAGGTGAAGTTTCGGAGATACAGCTCAAAGGT-ATGGACTTGCAAGGTTC-TCTG 336
|| |||||| |||| ||||||||||| ||| || || ||||| || |||||| | | |
Sbjct 204 CGAAAGAGGTCAAGTCTCGGAGATACAACTCCAA-GTCATGGATTTTCAAGGTCCGT-TA 261
Query 337 CCGGTGACTAGTCTCCGG-AGCCTCAAGTCTCTTACTTCCCTCACTTTATCTTCAC-TGA 394
|||| ||| | ||||||| || | |||||||| |||| |||| |||| | || | |||
Sbjct 262 CCGGCGACGAATCTCCGGCAG-TTAAAGTCTCTGACTTTACTCAGTTTAACCTC-CGTGA 319
Query 395 ATCTCACCGGAGT-AATCCCCAAGGAGATCGGAGACTTCACGGAGCTTG-AGTTACTCGA 452
|||||||||| | ||| || || ||| | |||||||| ||||||| | |||| || ||
Sbjct 320 ATCTCACCGG-TTCAATTCCTAAAGAGCTTGGAGACTTGTCGGAGCTAGAAGTT-CTTGA 377
Query 453 TTT-GTCGGATAATTCTCTCTCCGGTGATATCCCTGTGGAAATCTTCAGGCTCAAGAAAC 511
||| | | |||||||||||||| ||||| ||||| ||||||||||||| |||||||||||
Sbjct 378 TTTAG-CTGATAATTCTCTCTCTGGTGAAATCCCAGTGGAAATCTTCAAGCTCAAGAAAC 436
Query 512 TCAAGACTCTGTCTCTGAACACTAACAATCTAGAAGGTCAT-ATTCCGAT-GGAGATT-G 568
|||||||||||||||| ||||| |||||||| |||||| | ||||| || |||| || |
Sbjct 437 TCAAGACTCTGTCTCTCAACACAAACAATCTCGAAGGT-GTGATTCC-ATCGGAG-TTAG 493
Query 569 GGAATCTTTCG-G-GTCTCGTAGAGCTTA-TGCTTTTCGACAACAAGCTATCCGGAGAGA 625
|||||| ||| | ||||| ||||| | | || |||||||| || || |||||||||
Sbjct 494 GGAATC--TCGTGAACCTCGTCGAGCTCACT-CTCTTCGACAATAAACTCGCCGGAGAGA 550
Query 626 TCCCAAGGAGTATCGGAGAGCTCAAGAATCTACAAGTCTTACGTGCTGGTGGGAACAAGA 685
| || || | |||||||| |||||||||||| || |||| ||||| |||||||||||||
Sbjct 551 TTCCTAGAACCATCGGAGAACTCAAGAATCTAGAAATCTTCCGTGCAGGTGGGAACAAGA 610
Query 686 ATCTAAGAGGTGAGCTTCCTTGGGAGATAGGTAACTGCGAGAATCTTGT-AATGCTT-GG 743
|||| ||||| ||||||||||||||||| ||||||||||||| |||||| | | || ||
Sbjct 611 ATCTCAGAGGAGAGCTTCCTTGGGAGATTGGTAACTGCGAGAGTCTTGTGACT--TTAGG 668
Query 744 TCTCGCTGAGACTAGTCTCTCCGGGAAACTTCCGGCGTCGATTGGAAACCTGAAACGTGT 803
|||||| || || ||||||||||| |||||||||| |||||| ||| |||||||| ||
Sbjct 669 TCTCGCCGAAACAAGTCTCTCCGGTAAACTTCCGGAGTCGATCGGAGACCTGAAAAAAGT 728
Query 804 TCAGACAATAGCAATTTACACGTCACTCTTGTCTGGTCCAATTCCGGATGAGATTGGATA 863
|||||||||||| | |||||||||||||||||||||||||| || |||||||||||| |
Sbjct 729 TCAGACAATAGCCCTGTACACGTCACTCTTGTCTGGTCCAATCCCTGATGAGATTGGAAA 788
Query 864 CTGCACAGAGCTCCAAAACCTCTACTTGTATCAGAATTCAATCTCAGGATCGATCCCTAC 923
|||||||||||| ||||||||||||||||| || || |||||||| |||||||| |||
Sbjct 789 CTGCACAGAGCTTCAAAACCTCTACTTGTACCAAAACTCAATCTCTGGATCGATTCCT-T 847
Query 924 CACCA-TTGGAGGTTTAAAGAAGCTGCAGAGTCTACTTTTATGGCAGAACAATCTCGTTG 982
|| || | ||| || | |||||||| || ||||| || |||||||| ||||||||||| |
Sbjct 848 CATCACTGGGACGTCTCAAGAAGCTTCAAAGTCTTCTCTTATGGCAAAACAATCTCGTCG 907
Query 983 GGAAAAT-CCCAACCGAGCTTGGGAACTGTCCCGAGCTCTGGCTTATCGATTTTTCCGAG 1041
| ||||| ||| |||||||| || | |||||| ||||| | || ||||||| || ||
Sbjct 908 GAAAAATACCC-ACCGAGCTAGGCACCTGTCCGGAGCTTTTCCTCGTCGATTTATCTGAA 966
Query 1042 AATCTCCTCACCGGGACCATCCCAAGGAGCTTCGGAAAACTT-GAGAATCTACAAGAGCT 1100
||||| |||||||| | ||||||||| ||||||||||| ||| | ||||| ||||| ||
Sbjct 967 AATCTTCTCACCGGAAACATCCCAAGAAGCTTCGGAAACCTTCCA-AATCTCCAAGAACT 1025
Query 1101 TCAGCTGAGTGTAAACCAGA-TCTCAGGAACAATCCCTGAAGAGCTAACGAATTGCACGA 1159
|||||| || || ||||| | |||| || ||||||||||||||||| |||| |||||||
Sbjct 1026 TCAGCTCAGCGTTAACCA-ACTCTCCGGTACAATCCCTGAAGAGCTCGCGAACTGCACGA 1084
Query 1160 AGCTGACGCATTTAGAGATCGACAATAATCTCATCACAGGAGAGATTCCGTCATTGAT-G 1218
|||| || |||||||||||||| || || | ||| | || |||||||| | ||||| |
Sbjct 1085 AGCTAACACATTTAGAGATCGATAACAACCAAATCTCCGGCGAGATTCCACCGTTGATCG 1144
Query 1219 AGTAACCTAAGAAGCTTAACCATGTTCTTCGCATGGCAGAA-CAAGTTAACTGGAAACAT 1277
| || ||| |||||| || ||||||||||| |||||||| | ||||||| ||||| ||
Sbjct 1145 -GAAAATTAACAAGCTTGACGATGTTCTTCGCGTGGCAGAATC-AGTTAACCGGAAAAAT 1202
Query 1278 CCCTCAAAGTCTCTCCCAGTGTCGTGAGCTTCAAGCCATCGATCTCTCTTACAACAGTCT 1337
|| || ||| || || || | ||||||||||| ||||||||||||||||| | |||
Sbjct 1203 TCCAGAATCTCTTTCTCAATGCCAAGAGCTTCAAGCGATCGATCTCTCTTACAATAATCT 1262
Query 1338 CTCTGGCTCCAT-CCCAAAAGAGATATTCGGGTTACGAAACCTCACGAAGCTTCTTCTTC 1396
|||||| || || || || || || |||| |||||||||||||||||||||||||||
Sbjct 1263 CTCTGGTTCGATACCTAATGGA-ATCTTCGAAATACGAAACCTCACGAAGCTTCTTCTTC 1321
Query 1397 TCTCCAA-TGATTTGTCGGGTTTCATACCTCCGGATATTGGAAACTGTACGAATCTTTAC 1455
|||| || | | || || || |||||||| ||||||||||||||||| |||||||| |||
Sbjct 1322 TCTCTAACT-ACTTATCTGGATTCATACCACCGGATATTGGAAACTGCACGAATCTCTAC 1380
Query 1456 CGGTTAAGACTCAACGGTAACAGACTCGCCGG-AAGTATCCCGTCGGAAATCGGGAATCT 1514
|||||||||||||||| |||||||| || || || ||| ||| |||| || ||||||||
Sbjct 1381 AGGTTAAGACTCAACGGAAACAGACTTGCGGGGAA-TATTCCGGCGGAGATTGGGAATCT 1439
Query 1515 GAAAAATC-TCAACTTTGTTGATATAAGTGAGAACCGTCTCGTCGGGT-CAATCCCTCCG 1572
|||||| | |||||||| | ||||||||||| || |||||| |||| || ||| ||||
Sbjct 1440 GAAAAA-CATCAACTTTATCGATATAAGTGATAATCGTCTCATCGGAAACATTCC-TCCG 1497
Query 1573 GCGATCTCTGGTTGTGA-AAGCCTCGAGTTTC-TCGATCTTCACACGAATAGTCTCTCCG 1630
|||||||| |||||| | ||| ||||| || | ||||||| || | || || | |||
Sbjct 1498 GCGATCTCCGGTTGT-ACAAGTCTCGAATT-CGTCGATCTACATTCAAACGGTTTAACCG 1555
Query 1631 GTTCATTGCTCGGTACTACACTCCCAAAGAGCTTG-AAGTTCATCGATTTCTCCGATAAT 1689
|| || | |||||| || ||| | |||||| || ||||||||||| |||||||||
Sbjct 1556 GTGGTTTACCCGGTAC-ACT-TCCGAG-GAGCTTACAA-TTCATCGATTTATCCGATAAT 1611
Query 1690 GC-TCTGTCCAGTACTCTGCCT-CCGGGAATAGGATTGTTGACAGAGCTTACAAAGCTCA 1747
| | | || || |||| || |||| ||| |||| ||| || || || || |||||||
Sbjct 1612 TCAT-TAACCGGTCCTCTACCAACCGG-AATCGGATCGTTAACCGAACTAACGAAGCTCA 1669
Query 1748 ATCTCGCCAAGAACAGATTATCCGGCGAAATCCCTAGAGAAATCTCCACTTGTCGGAGTC 1807
||||||| |||||| |||| |||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1670 ATCTCGCTAAGAACCGATTCTCCGGCGAAATCCCAAGAGAGATCTCGTCTTGTCGGAGTC 1729
Query 1808 TACAGCTTCTCAATCTCGGCGAAAAT-GACTTTTCTGGTGAAATCCCTGACGAATTGGGT 1866
| ||||||||||| || ||||| ||| | ||| | || |||||||| |||| | ||
Sbjct 1730 TTCAGCTTCTCAACCTTGGCGACAATAG-CTTCACCGGAGAAATCCCAAACGACCTAGGA 1788
Query 1867 CAAATCCCGTCTCTGGCGATATCTCTTAATCTCAGCTGCAATAGGTTCGTCGGAGAAATC 1926
| |||||||||||| || ||| |||| |||||||||||||||| |||| ||||||||||
Sbjct 1789 CGAATCCCGTCTCTTGCCATAGCTCTGAATCTCAGCTGCAATAACTTCGCCGGAGAAATC 1848
Query 1927 CCGTCTAGATTCTCCGA-CTTGAAAAACCTTGGAGTGCTCGACGTATCTCACAACCAACT 1985
||| | |||||||| || | | | || || ||| ||||| | ||||||||| ||||
Sbjct 1849 CCGACGAGATTCTC-GAGCCTCACTAATCTCGGAACCCTCGATATCTCTCACAACAAACT 1907
Query 1986 CACCGGAAACTTAAACGTTTTAACGGATTTGCAAAACCTCGTCTCTCTCAACATCTCCTA 2045
| |||||||||||||||| ||| | ||| | || ||||||||||| ||||||||||| |
Sbjct 1908 CGCCGGAAACTTAAACGTCTTAGCTGATCTACAGAACCTCGTCTCACTCAACATCTCATT 1967
Query 2046 CAACGATTTCTCCGGCGATTTACCCAACACGCCCTTTTTCCGGCGACTTCCACTTTCTGA 2105
|||||| ||||||||||| ||||| ||||| | |||||| || ||| ||||| ||||
Sbjct 1968 CAACGAATTCTCCGGCGAGTTACCAAACACTCTGTTTTTCAGGAAACTGCCACTCTCTGT 2027
Query 2106 TCTCGCCTCAAACAGAGGGCTTTACATCTCGAACGCAATCTCGACCCGACCCG-ACCCGA 2164
||| | ||||||| |||||||| ||||||| | | | | ||| || | | || |
Sbjct 2028 TCTTGAATCAAACAAAGGGCTTTTTATCTCGACC-CGACC-CGA---GAATGGGATCCAA 2082
Query 2165 CGACCAGGA-ACAGCTCCGTCGTTAGATTGACTATTTTAATTCTCGTCGTC-GTCACTGC 2222
||| | | || |||||| ||| | | | || || | || ||||||| | | || ||
Sbjct 2083 --ACCCG-ACACCGCTCCGCCGTGAAACTAACCATGTCGATCCTCGTCG-CAG-CAA-GC 2136
Query 2223 --CGTACTTGTTCTCATGGCGGTTTACACTCTAGTCCGGGCA-AGA--GCCGCCGGAAAA 2277
||| ||||||||||||||| |||||||||| ||| ||| ||| | ||||||||||
Sbjct 2137 GTCGTTCTTGTTCTCATGGCGATTTACACTCTCGTCAAAGCACAGAAAGTCGCCGGAAAA 2196
Query 2278 CAACTCCTCGGAGAAGAAATAGATTCGTGGGAAGTGACGCTTTACCAAAAACTCGATTTT 2337
|| | | || ||| ||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 2197 CA--T----G-AG--GAACTAGATTCTTGGGAAGTGACTCTTTATCAAAAACTCGATTTC 2247
Query 2338 TCAATCGACGACATTGTTAAGAATCTGACGTCAGCAAACGTGATCGGAACCGGAAGCTCC 2397
|||||||||||||| || |||||||| || ||||| |||||||||||||| |||||||||
Sbjct 2248 TCAATCGACGACATCGTCAAGAATCTAACTTCAGCTAACGTGATCGGAACTGGAAGCTCC 2307
Query 2398 GGTGTGGTTTACCGTA-TAACGATTCCC-TCCGGCGAGTCACTCGCGGTGAAGAAAATGT 2455
||||| |||||| | | | || || ||| ||||| || | | || |||||||||||||
Sbjct 2308 GGTGTAGTTTACAG-AGTCACAAT-CCCGTCCGGTGAAACTTTAGCCGTGAAGAAAATGT 2365
Query 2456 GGTCAAAGGAAGAGAGTGGTGCGTTTAACTCCGAGATTAAAACTCTAGGATCGATTCGTC 2515
||||||||||||| | || ||||||||||| ||||| || ||||| ||||| ||||| |
Sbjct 2366 GGTCAAAGGAAGAAAACGGAGCGTTTAACTCAGAGATCAACACTCTTGGATCTATTCGAC 2425
Query 2516 A-CAGAAACATCGTTCGTCTTCTTGG-TTGGTGCTCTAATCGGAATCTGAAACTCTTGTT 2573
| | ||| ||| | ||||| ||||| |||||| || |||||||||||||| || |||||
Sbjct 2426 ATCGGAA-CATAATCCGTCT-CTTGGGTTGGTGTTCGAATCGGAATCTGAAGCTTTTGTT 2483
Query 2574 CTACGACTATCTCCCTAACGGTAGCTTGAGTTCTCGGCTTCACGGCGCCGGAAAAGGA-G 2632
||| || ||||| |||||||| || || || |||| |||||| || ||||| |||||| |
Sbjct 2484 CTATGATTATCTTCCTAACGGAAGTTTAAGCTCTCTGCTTCATGGTGCCGGTAAAGGAAG 2543
Query 2633 -G-ATGTGTTGATTGGGAGGCGCGATACGACGTCGTTCTT-GGTGTGGCCCATGCACTTG 2689
| | | | ||||||| | || || |||||||||||| || || || || ||||| ||||
Sbjct 2544 TGGAGGAGCTGATTGGCAAGCACGTTACGACGTCGTT-TTAGGCGTTGCACATGCTCTTG 2602
Query 2690 CTTATCTCCACCATGATTGTCTCCC-CACAATTATACATGGTGACGTTAAAGCTATGAAT 2748
||||||| || ||||||||| | || | | ||| |||| |||||||||||||||||||||
Sbjct 2603 CTTATCTTCATCATGATTGTTTACCTC-CGATTCTACACGGTGACGTTAAAGCTATGAAT 2661
Query 2749 GTCTTATTGGGT-CCTCACTTTGAACCCTACTTAGCTGATTTCGGTTTAGCTAGAACCAT 2807
|||||||||||| || | || ||| | |||||||| |||||||||||||| | || | |
Sbjct 2662 GTCTTATTGGGTTCC-CGGTTCGAATCTTACTTAGCCGATTTCGGTTTAGCGAAAATCGT 2720
Query 2808 CTCCGGTTATCCAAATACCGGAATCGAT-TTAG-CGAAACCCACCAATCGGCCTCCGATG 2865
|||||| | | || || | | || || | ||||| | || ||||||||| |
Sbjct 2721 ATCCGGTGAGGGAGTTATCG-A-TGGAGATTCGTCGAAATTGAGTAACCGGCCTCCGTTA 2778
Query 2866 GCTGGCTCCTATGGTTACATGGCTCCAGAACATGCTTCGATGCAACGTATTACCGAGAAG 2925
|| || || || || || |||||||||||||||||||| ||||||| ||| ||||| |||
Sbjct 2779 GCCGGTTCTTACGGCTATATGGCTCCAGAACATGCTTCAATGCAACATATAACCGAAAAG 2838
Query 2926 AGCGATGTTTATAGTTACGGGGTGGTATTGTTAGAGGTTTTAACCGGAAAGCATCCGTTA 2985
|| ||||| ||||| || || ||||| | |||| ||||||||||| |||||||| ||
Sbjct 2839 AGTGATGTGTATAGCTATGGAGTGGTGCTACTAGAAGTTTTAACCGGGAAGCATCCATTG 2898
Query 2986 GATCCGGATCTACCAGGAGGTGCACATTTGGTT-AAGTGGGTGAGAGATCACTTGGCTGA 3044
|||||||||||||| || ||||| ||||||||| || |||||||||||||| || || |
Sbjct 2899 GATCCGGATCTACCCGGTGGTGCTCATTTGGTTCAA-TGGGTGAGAGATCATTTAGCCG- 2956
Query 3045 GAAA-AAAGATCCTAGCAGGC-TTCTTGATCCGAGACTC-GATGGACGGACTGA-CTCGA 3100
|||| ||||||||||| || ||||||| ||||||||| | |||||| | || | | |
Sbjct 2957 GAAAGAAAGATCCTAG-AGAAATTCTTGACCCGAGACTCCGC-GGACGGGCAGATCCC-A 3013
Query 3101 TAATGCATGAGATGCTTCAAACTCTTGCGGTTGCGTTC-TTGTGTGTTAGCAACAAGGCA 3159
|||||||||||||||| |||||||| || || |||||| || || || ||||||||||||
Sbjct 3014 TAATGCATGAGATGCTACAAACTCTAGCAGTCGCGTTCCTT-TGCGTGAGCAACAAGGCA 3072
Query 3160 AAC-GA-ACGACCTTTAATGAAAGATGTTGTGGCAATGCTCACAGAAATAAGGCA-TATT 3216
| || | | ||| | |||||||| ||||||| ||||| | ||| || || || | ||
Sbjct 3073 G-CTGATAGG-CCTATGATGAAAGACATTGTGGCGATGCTTAAAGAGATTAGACAGT-TT 3129
Query 3217 GATGTTG-GAAGATCGGAGACAGAGAAGATCAAAGCTGGTGGTTGCGGAAGCAAA-G--A 3272
||| | | | ||||||| || || | ||| |||| || |||| || ||| | |
Sbjct 3130 GATATCGAGC-GATCGGAAACCGATATGATTAAAGGGGGAAAATGCG-AA--AAATGGCA 3185
Query 3273 GCCACAACAATTTATGTCGAATG-AGAAAATCATCAATTCTCA-CG-G-TTCGTCTAATT 3328
||| |||| || | | | | ||||||| ||||| ||| || | ||| |||||||
Sbjct 3186 GCCGCAACCGTT-AC--C-ACCGGAGAAAATTGTCAATACTCCTCGAGGTTCATCTAATT 3241
Query 3329 GTTCATTTGCGTTT-TCGGATGACTCCGTTTAA 3360
|||| ||||| ||| |||||||| ||||| |||
Sbjct 3242 GTTCGTTTGC-TTTCTCGGATGAATCCGTATAA 3273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132592584332
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5