BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26555.1
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492153 jgi|Araly1|492153|fgenesh2_kg.7__1586__AT4G26555.1 1066 0.0
> Ahg492153 jgi|Araly1|492153|fgenesh2_kg.7__1586__AT4G26555.1
Length=776
Score = 1066 bits (577), Expect = 0.0
Identities = 740/812 (91%), Gaps = 38/812 (5%)
Strand=Plus/Plus
Query 1 TCTCTCACTCTTTTTCTTATCCACTATCCATagaagaagaagaagaagaCTGTTGACGAC 60
||||||||||||||||||||||||||||| | |||||||||||| ||||||||
Sbjct 1 TCTCTCACTCTTTTTCTTATCCACTATCC--------A-AAGAAGAAGACTATTGACGAC 51
Query 61 GACGGCGATGGCGATGGCTATGGAGATTTCTCTTCCTTTCGTTGGATCATCCATGGCCTT 120
|| | ||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct 52 GA---C---GGCGATGGCTATGGAGATTTCTCATCGTTTCTTTGGATCATCCATGGCCTT 105
Query 121 AAGCGCGGGAAAATCAAGGAACAGCGTTTCTAGGATTAGTCGTGTTGGATTCTCTTCGGT 180
||||| ||||||||| |||||| |||||||| ||||||||||||||||||| ||||||||
Sbjct 106 AAGCGTGGGAAAATCTAGGAACGGCGTTTCTGGGATTAGTCGTGTTGGATTATCTTCGGT 165
Query 181 CTCGGCTGTACATGTACCCAGAAGGATGTTTATGCAGCT-GTCTGGATTTGGTTCGGTCT 239
||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 166 TTCGGCCGTACATGTACCCAGAAGGATGTTTATGCAGCTCGT-TGGGTTTGGTTCGGTCT 224
Query 240 TGACGCTTCTGGATTTTCCTAGTTTAGCGGCGCCGGTTCCTCAGATGAAGGAACCTGAAG 299
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||
Sbjct 225 TGACGCTTCTGGATTTTCCTGGTTTAGCGGCGCCGGTTCCTCAAATGAAGGAACCTCAAG 284
Query 300 TGATCAGGACATTGAAACTCCCGAGTGGCGTGAGGTATCAAGAGATAATTGAAGGTGAAG 359
| |||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 285 TTATCAGGACTTTGAAGCTCCCGAGTGGCGTGAGGTTTCAAGAGATAATTGAAGGGGAAG 344
Query 360 GACGAGAAGCTCATGAAGGGGACCTGGTCGAACTAAACTATGTGTGTCGGCGTGCAAATG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GACGAGAAGCTCATGAAGGGGACCTGGTCGAACTAAACTATGTGTGTCGGCGTGCAAATG 404
Query 420 GATATTTCGTTCATAGCACGGTGGATCAATTCAGTGGTGAAAGCTCTCCTGTCAAACTTA 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 405 GATATTTCGTTCATAGCACGGTGGACCAATTCAGTGGTGAAAGCTCTCCTGTCAAACTTA 464
Query 480 TTCTCGATGAAAACGACGTAATTGAGGGCTTGAAAGAAGTCTTGGTGGGCATGAAAGCTG 539
|||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 465 TTCTTGATGAAAATGACGTAATTGAGGGCTTGAAGGAAGTCTTGGTGGGCATGAAAGCCG 524
Query 540 GAGGGAAGCGTAGGGCACTGATACCTCCATCAGTAGGGTACATAAACGAGACATTGAAGC 599
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GGGGGAAGCGAAGAGCACTGATACCTCCATCAGTAGGGTACATAAACGAGACATTGAAGC 584
Query 600 CAATCCCCGAGGAGTTTGGACCACGACGCAGCCTTCTATCGCATGCGAACGAGCCTCTGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CAATCCCCGAGGAGTTTGGACCACGACGCAGCCTTCTATCGCATGCGAACGAGCCTCTGG 644
Query 660 TCTTTGAAATCCAGCTCTTGAAAGTATTATGATATTTGTCCTGTCACTGACTGTTAATGA 719
||||||||||||||||||||||||||||||||||||| | || | | | |||
Sbjct 645 TCTTTGAAATCCAGCTCTTGAAAGTATTATGATATTT-T---GT---T-A-----A-TGA 690
Query 720 AGTATTTTGGCTGTGAGATTA-TTTATTTTCTATTGTAAATCTGTAACAACAACTGCTTG 778
||||||||||||||||| | | |||| |||||||||||||||||||||||||||| | ||
Sbjct 691 AGTATTTTGGCTGTGAGCT-AGTTTAATTTCTATTGTAAATCTGTAACAACAACTACATG 749
Query 779 GAACTACATATCTTGATGAGTTCTGCTTTAAG 810
||||| | ||| |||||||||||| ||||
Sbjct 750 GAACTG--T--CTT-ATGAGTTCTGCTATAAG 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31375160691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5