BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26570.2
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492151 jgi|Araly1|492151|fgenesh2_kg.7__1584__AT4G26570.2 1764 0.0
Ahg950254 jgi|Araly1|950254|scaffold_802141.1 680 0.0
> Ahg492151 jgi|Araly1|492151|fgenesh2_kg.7__1584__AT4G26570.2
Length=1033
Score = 1764 bits (955), Expect = 0.0
Identities = 1009/1035 (97%), Gaps = 3/1035 (0%)
Strand=Plus/Plus
Query 1 ATAGAAAATCGTGTCGACCTTTTTTCTCTCACTTACCCAATAAGAGCTTTTTTCGCGTTT 60
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAGAAAATCGTGTCTACC-TTTTTCTCTCACTTACCCAATAAGAGCTTTTTTCGCGTTT 59
Query 61 TCCACCGCAACCACCGTCACCTTCAACCGCCGGAGCCGCCGCAAGGAAGGCTCATCATCC 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 60 TCCACCGCAACCATCGTCACCTTCAACCGCCGGAGCCGCCGCAAGGAAGGCTC-TTATCC 118
Query 121 GCCGTGGCAA-TTTTTTGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGT 179
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 119 GCCGTGGCAATTTTTTTGAGGTGTACAAAGAATTGCCTATTTGACGAACCAGGAAATGGT 178
Query 180 TAAAAGGCATGGAGAGTTTTGATTTACAAGATATATCATGTCGCAGTGCATAGACGGTTT 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 179 TAAAAGGCATGGAGAGTTTTGATTTACAAGAGATATCATGTCGCAGTGCATAGACGGTTT 238
Query 240 CAAGCATGTATGCTCCTCTTTTTTCCGGTGTTTTGATATCGATATTTACAAACAATCTGG 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CAAGCATATATGCTCCTCTTTTTTCCGGTGTTTTGATATCGATATTTACAAACAATCTGG 298
Query 300 AGGCCTTGGTGACCCTGAACTTCTTGCGAGAGAGACAGTTTTTAGCGTGAGTGAAATAGA 359
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGGCCTTGGAGACCCTGAACTGCTTGCGAGAGAGACAGTTTTTAGCGTGAGTGAAATAGA 358
Query 360 GGCTCTCTATGAGCTGTTTAAGAAAATCAGCAGTGCTGTGATTGATGATGGGCTAATAAA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGCTCTCTATGAGCTGTTTAAGAAAATCAGCAGTGCTGTGATTGATGATGGGCTAATAAA 418
Query 420 CAAGGAAGAATTTCAGTTAGCCTTGTTCAAGACAAATAAAAAAGAGAGCTTGTTTGCAGA 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAAGGAAGAGTTTCAGTTAGCCTTGTTCAAGACAAATAAAAAAGAGAGCTTGTTTGCAGA 478
Query 480 CCGGTACCAATCACAGGTATTCGATTTGTTTGACACAAAGCATAATGGAATACTGGGGTT 539
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 479 CCGGTACCAATCACAGGTATTCGATTTGTTCGACACAAAGCATAATGGAATACTAGGGTT 538
Query 540 TGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGAT 598
Query 600 TGACTTTTCGTTTCAGCTATATGATCTTAAGCAGCAAGGTTTCATAGAGAGGCAAGAGGT 659
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 599 TGACTTTTCGTTTCAGCTATATGATCTTAAGCAGCAAGGTTTCATCGAGAGGCAGGAGGT 658
Query 660 GAAGCAAATGGTGGTGGCTACTCTTGCTGAGTCCGGCATGAACCTGTCAGACGAAATCAT 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 659 GAAGCAAATGGTGGTGGCTACTCTTGCTGAGTCTGGCATGAACCTGTCAGACGAAATCAT 718
Query 720 AGAGAGTATAATCGACAAGACATTTGAGGAAGCTGATACAAAACATGACGGGAGGATCGA 779
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 719 AGAGAGTATAATCGACAAGACATTTGAGGAAGCTGACACAAAACATGACGGGAGGATCGA 778
Query 780 TAAGGAAGAGTGGAGAACCCTTGTTCTCAGGCATCCTTCCCTTCTAAAGAATATGACTCT 839
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 779 TAAGGAAGAGTGGAGGACCCTTGTTCTCAGGCATCCTTCCCTTCTAAAGAACATGACTCT 838
Query 840 CCAGTATCTTAAGGATATAACAACTACATTTCCGAGCTTTGTGTTCCACTCGCAGGTGGA 899
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 839 CCAATATCTTAAGGATATCACAACTACATTTCCAAGCTTTGTGTTCCACTCGCAGGTGGA 898
Query 900 AGATACCTGAGAAAAACAATAGCATATTAGCAGAGGAGACAATTTGGGAATTGTGTTTGT 959
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 AGATACCTGAGAAAAACAATAGCTTATTAGCAGAGGAGACAATTTGGGAATTGTGTTTGT 958
Query 960 TTTCTGATTATGTATCATGTCTATTTGTTTCAATCTCTCTGAACATTTTCAAGATTTTGT 1019
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 959 TTTCTGATTATGTATCATGTTTATTTGTTTCAATCTCTCTGAACATTTTCAAGATTTTGT 1018
Query 1020 TGTTACTTGTGTGAA 1034
|||||||||||||||
Sbjct 1019 TGTTACTTGTGTGAA 1033
> Ahg950254 jgi|Araly1|950254|scaffold_802141.1
Length=721
Score = 680 bits (368), Expect = 0.0
Identities = 607/720 (84%), Gaps = 25/720 (3%)
Strand=Plus/Plus
Query 211 TATATCATGTCGCAGTGCATAGACGGTTTCAAGCATGTATGCTCCTCTTTTTTCCGGTGT 270
|||||||||||||||||| | ||||||||||||||| ||||| |||| |||| |||||
Sbjct 15 TATATCATGTCGCAGTGCGTTGACGGTTTCAAGCATTTATGCACCTCGGTTTTAGGGTGT 74
Query 271 TTTGATATCGATATT-TACAAACAATCTGGAGGCCTTGGTGACCCTGAACTT-CTTGCGA 328
|||||| | ||| || || |||||||| || || ||||| || |||||| || ||||| |
Sbjct 75 TTTGATCTTGAT-TTGTATAAACAATCCGGTGGTCTTGGAGATCCTGAA-TTGCTTGCAA 132
Query 329 GAGAGACAGTTTTTAGCGTGAGTGAAATAGAGGCTCTCTATGAGCTGTTTAAGAAAATCA 388
|||| || |||||||| |||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 133 GAGACACTGTTTTTAGTGTGAGTGAAATAGAAGCTCTTTATGAGCTGTTTAAGAAAATTA 192
Query 389 GCAGTGCTGTGATTGATGATGGGCTAATAAACAAGGAAGAATTTCAGTTAGCCTTGTTCA 448
||||||| ||||||||||||||||| |||||||||||||| |||||||| || ||||| |
Sbjct 193 GCAGTGCCGTGATTGATGATGGGCTTATAAACAAGGAAGAGTTTCAGTTGGCTTTGTTTA 252
Query 449 AGACAAATAAAAAAGAGAGCTTGTTTGCAGACCGGTACCAATCACAGGTATTCGATTTGT 508
||||||||||||||||||||||||||||||| ||| | | ||||||||||
Sbjct 253 AGACAAATAAAAAAGAGAGCTTGTTTGCAGATCGGG-----T------T-TTCGATTTGT 300
Query 509 TTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCT 568
|||| ||||| || ||||||||||| ||||||||||||||||| ||||||||||| || |
Sbjct 301 TTGATACAAAACACAATGGAATACTCGGGTTTGAGGAGTTTGCCCGTGCTCTCTCCGTAT 360
Query 569 TTCATCCAAATGCTCCCATAGAAGACAAGATTGACTTTTCGTTTCAGCTATATGATCTTA 628
|||| |||||||| || ||||| ||||| || ||||||| |||||||||||||||||||
Sbjct 361 TTCACCCAAATGCGCCTATAGATGACAAAATCCACTTTTCATTTCAGCTATATGATCTTA 420
Query 629 AGCAGCAAGGTTTCATAGAGA-GGCAAGAGGTGAAGCAAATGGTGGTGGCTACTCTTGCT 687
| |||||||| ||||| || | ||||||||||||| |||||||| || ||||| ||||||
Sbjct 421 AACAGCAAGGGTTCATCGA-ACGGCAAGAGGTGAAACAAATGGTTGTCGCTACGCTTGCT 479
Query 688 GAGTCCGGCATGAACCTGTCAGACGAAA-T--CATAGAGAGTATAATCGACAAGACATTT 744
|| || || ||||| || || || | | |||||||| |||||||| ||||| |||
Sbjct 480 GAATCTGGAATGAATTTGA-AG--GATACTGTCATAGAGAACATAATCGATAAGACGTTT 536
Query 745 GAGGAAGCTGATACAAAACATGACGGGAGGATCGATAAGGAAGAGTGGAGAACCCTTGTT 804
|||||||| || |||||||| || || | ||||||||||||||||||||||| |||||||
Sbjct 537 GAGGAAGCAGACACAAAACACGATGGAAAGATCGATAAGGAAGAGTGGAGAAGCCTTGTT 596
Query 805 CTCAGGCATCCTTCCCTTCTAAAGAATATGACTCTCCAGTATCTTAAGGATATAACAACT 864
|| || ||||| |||||| ||||| |||||||| |||||||| |||||||| || |||
Sbjct 597 CTTAGACATCCCAGCCTTCTGAAGAACATGACTCTTCAGTATCTCAAGGATATCACGACT 656
Query 865 ACATTTCCGAGCTTTGTGTTCCACTCGCAGGTGGAAGATACCTGAGAAAAACAATAGCAT 924
|| ||||| |||||||||||||| || ||||| |||||||||||| |||||||| |||||
Sbjct 657 ACGTTTCCAAGCTTTGTGTTCCATTCTCAGGTTGAAGATACCTGA-AAAAACAAAAGCAT 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5