BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26580.1
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492150 jgi|Araly1|492150|fgenesh2_kg.7__1583__AT4G26580.1 1679 0.0
Ahg946870 jgi|Araly1|946870|scaffold_703099.1 121 2e-26
> Ahg492150 jgi|Araly1|492150|fgenesh2_kg.7__1583__AT4G26580.1
Length=1161
Score = 1679 bits (909), Expect = 0.0
Identities = 1094/1180 (93%), Gaps = 25/1180 (2%)
Strand=Plus/Plus
Query 1 ATATCCATCCATGTCtttttttttACATGTAC-TTTAATTGCATATTTTAAAGACTTTTC 59
||||||||||||| | ||||||||||||| |||||||||||| | | ||||||||||
Sbjct 1 ATATCCATCCATG----TGTTTTTACATGTACATTTAATTGCATA-TCTGAAGACTTTTC 55
Query 60 ATGGCTTTTTAGCTCAAGCTTTACTCTGTTTCTCTTTGCTCTTGTTCAGGAGATCAAATC 119
|| |||| ||||||||| | || | |||| |||||||||||||||||||||
Sbjct 56 GTGACTTTCTAGCTCAAG-------C---TT-T-TTTGTTCTTGTTCAGGAGATCAAATC 103
Query 120 A--AAGA-C-CTCTCTGTTTCCGATATGAGTACCCGTTATTCCTCTCAGTTGCAATCATC 175
| || | | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 104 ATCAA-ATCTCTCTCTGTTTCCGATATGAGTACCCGTTTTTCCTCTCAGTTGCAATCATC 162
Query 176 AGCCATTAACTCCATCACTGTCTCCTCATCTTCTTCCTTCGCTTCCACG-CAACTGGATG 234
||||||||||||||||||||||||||||||||||||| ||| ||||||| | || |||||
Sbjct 163 AGCCATTAACTCCATCACTGTCTCCTCATCTTCTTCCCTCGATTCCACGTC-ACGGGATG 221
Query 235 ATAACACTCACACGGCTCCGGAGAGCTCTCCATCTTCTTCCTTCTTCATGAGACTTGCCA 294
|||||| ||||| ||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 222 ATAACATTCACATGGCTCCGGAGAGCTCTCCATCTTCTACCTTCTTGATGAGACTTGCCA 281
Query 295 TGAGGGTATCTAGAGCAAGGTGGTTCATTTTCTTGAGAAGAGTCTTTCATTACCAGAACG 354
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TGAGGGTATCTAGAGCAACGTGGTTCATTTTCTTGAGAAGAGTCTTTCATTACCAGAACG 341
Query 355 CCTCAAGATCCGATCTTGGCACCAATCCTTTCAATTCTATCGCTTGGATGGTATCAGAGC 414
||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 342 CCTCAAGATCCGATCTTGGCACCAATCCTTTCAATTCTATCACTTGGATGATTTCAGAGC 401
Query 415 TCATCGCTTTACTTTTACAGATCACTGTGATAACATCCACACTAGCTTTGTCCAAAAACG 474
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 402 TCATCGCTTTACTTGTACAGATCACTGTCATAACATCCACACTAGCTTTGTCCAAGAACG 461
Query 475 AGAGGCCTGTTTGGCCGATGAGGTTATGGATCACTGGCTACAACGTTGGATGTCTGCTCA 534
||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct 462 AGAGGCCTGTTTGGCCGATGAGGCTATGGATCACCGGCTACAACGTCGGATGTCTGCTCA 521
Query 535 ATCTTATGTTACTATACGGTCGGTATCGTCAGCAAGATACTAGCCATGAAAATGCATTTA 594
|||||||| || |||||||| |||||||||||||| |||||||||| | |||||||||||
Sbjct 522 ATCTTATGCTATTATACGGTAGGTATCGTCAGCAACATACTAGCCAAGGAAATGCATTTA 581
Query 595 GCTTCGGCGATATTGAGCAGCAACAAAGAAGCAGGGAAGAGACCACCAGGTGCTCGCATT 654
|||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 582 GCTTCGGCGATATTGAGCTGCAACAGAGAAGCAGAGAAGAGACCACCAGGTGCTCGCATT 641
Query 655 TGATGAACAAATGCCGGACATCGCTGGAGCTATTCTTTGCGATATGGTTTGTGATAGGTA 714
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 TGATGAACAGATGCAGGACATCGCTGGAGCTATTCTTTGCGATATGGTTTGTGATAGGTA 701
Query 715 ATGTATGGGTTTTTGATTCTCGGTTTGGTTCTTTCCACTATGCTCCAATCCTTCATGTCC 774
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 702 ATGTATGGGTTTTTGATTCTCGGTTCGGTTCTTTCCACTATGCTCCAATCCTTCATGTCC 761
Query 775 TCTGCATCTCCCTACTCGCTTGGAACGCTCTCTGTTACTCCTTCCCATTTCTTCTCTTCC 834
||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 762 TCTGCATCTCCCTGCTCGCTTGGAACGCTCTATGCTACTCCTTCCCGTTTCTTCTCTTCC 821
Query 835 TCCTGCTCTGTTGTGTTGTACCTCTCGTTAGTAGCTTCCTCGGCTACAACATGAACGTTG 894
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 822 TCCTGCTCTGTTGTGTTGTGCCTCTCCTTAGTAGCTTCCTCGGCTACAACATGAACGTTG 881
Query 895 GATCTTCGGAAAAAGGAGCTTCAGATGACCAGATCTCCAGTCTCCCAAGTTGGAAATACA 954
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 882 GATCTTCGGAAAAAGGAGCTTCAGATGACCAAATCTCCAGTCTCCCTAGTTGGAAATACA 941
Query 955 AACTCATTGATGAAACTTCTGATTCTTCTCAAGCAAACAATGATCCGGAATGTTGTATAT 1014
|||||||||| ||| |||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct 942 AACTCATTGACGAAGCTTCAGATTCTGCTCAAGCAAGCAATGATCCGGAATGTTGTATAT 1001
Query 1015 GTTTGGCAAAGTACAAAGAGAAAGAAGAAGTGAGAAAGCTTCCATGTTCGCATAGGTTTC 1074
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1002 GTTTGGCAAAGTACAAAGAGAAAGAAGAAGTGAGAAAGCTTCCCTGTTCGCATAGGTTTC 1061
Query 1075 ACCTCAAATGCGTAGATCAATGGCTTCGTATCATCTCGTGTTGTCCTCTTTGCAAACAAG 1134
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1062 ACCTCAAATGTGTAGATCAATGGCTTCGTATCATCTCGTGTTGTCCTCTCTGCAAACAAA 1121
Query 1135 ATCTCCCTAACTGAAAAATCAAAACAATACATGAGTCACA 1174
|||| ||||||| |||||| ||||| | ||| ||| ||||
Sbjct 1122 ATCTTCCTAACTAAAAAATTAAAACGAGACACGAGACACA 1161
> Ahg946870 jgi|Araly1|946870|scaffold_703099.1
Length=280
Score = 121 bits (65), Expect = 2e-26
Identities = 87/98 (89%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 1041 GAAGTGAGAAAGCTTCCATGTTCGCATAGGTTTCACCTCAAATGCGTAGATCAATGGCTT 1100
||||| || ||||||||| |||| |||| ||||||| | || || |||||||||||||||
Sbjct 150 GAAGTAAGGAAGCTTCCACGTTCACATAAGTTTCACTTTAACTGTGTAGATCAATGGCTT 209
Query 1101 CGTATCATCTCGTGTTGTCCTCTTTGCAAACAAGATCT 1138
| |||||| |||||||||||||||||||||||||||||
Sbjct 210 CATATCATATCGTGTTGTCCTCTTTGCAAACAAGATCT 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52678808835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5