BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26590.1
Length=2628
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492149 jgi|Araly1|492149|fgenesh2_kg.7__1582__AT4G26590.1 3892 0.0
Ahg495675 jgi|Araly1|495675|fgenesh2_kg.8__1491__AT5G55930.1 1605 0.0
> Ahg492149 jgi|Araly1|492149|fgenesh2_kg.7__1582__AT4G26590.1
Length=2510
Score = 3892 bits (2107), Expect = 0.0
Identities = 2355/2476 (95%), Gaps = 11/2476 (0%)
Strand=Plus/Plus
Query 88 TTTTAATGTCAGGTCATTAACACAGGTTGCTTACAAGAACATTACTTCTACAGCAAGTTA 147
|||| ||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||
Sbjct 1 TTTTCATGTCAGGTCATTAACACATGTTGCTTACAAGAACATAACTTCTCCGGCAAGTTA 60
Query 148 TTCAGAACTCTGGACATTATCACCCGAGTCGATCGACGTCAGGGCCGCCTAAC-AGAAAA 206
| ||||||||||| ||| ||||||||| |||||||||||| || ||||||| | ||||
Sbjct 61 TCCAGAACTCTGGTCATCCTCACCCGAGCCGATCGACGTCA-GG--GCCTAACTA-AAAA 116
Query 207 TGGTAGGCTCTCTCGAAGTATCCAAGCCTCCAGAGCACAAGGTTGAGTCCAAGATCGTCA 266
|||||||||||||||||||||| ||||||||||| || ||| ||||||||||||||||||
Sbjct 117 TGGTAGGCTCTCTCGAAGTATCTAAGCCTCCAGATCAGAAGTTTGAGTCCAAGATCGTCA 176
Query 267 TAGCCGATGAAGAAGAAGAGGATGAAAACGACAGTCCAATCGAAGAGGTCCGTTTAACCG 326
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 177 TAGCCGATGAAGAAGAAGAGGAGGAAAACGACAGTCCAATTGAAGAGGTCCGGTTAACCG 236
Query 327 TACCGATAACCGACGATCCATCTCTACCAGTTTTGACATTCCGTACATGGTTCTTAGGAA 386
| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 237 TGCCGATAACCGACGATCCATCTCTACCGGTTTTGACGTTCCGAACATGGTTCTTAGGAA 296
Query 387 TGGTTTCTTGCGTGGTACTCGCGTTCGTGAACAATTTCTTCGGTTACCGGTCGAACCCGC 446
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 297 TGGTGTCTTGCGTGGTACTCGCGTTCGTGAACAATTTCTTCGGTTACCGGTCGAATCAGC 356
Query 447 TCACGGTATCTTCAGTCGTGGCTCAGATCATCACTCTCCCTCTAGGAAAGCTCATGGCCA 506
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 357 TCATGGTATCTTCAGTCGTGGCTCAGATCGTCACTCTCCCTCTAGGAAAGCTCATGGCCA 416
Query 507 CGACTCTACCAACAACAAAACTCCGTTTACCTGGTACAAATTGGTCGTGTTCGTTGAACC 566
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 417 CGACTCTACCAACAACAAAACTCCGGTTACCTGGTACAAATTGGTCGTGTTCGTTGAACC 476
Query 567 CTGGACCATTCAACATGAAGGAACATGTACTGATCACTATATTCGCTAATACCGGAGCTG 626
|||||||||| |||||||||||||||||||| ||||| |||||||||||||| || || |
Sbjct 477 CTGGACCATTTAACATGAAGGAACATGTACTAATCACCATATTCGCTAATACTGGGGCCG 536
Query 627 GAGGAGCTTATGCCACCAGCATCCTAACCATCGTTAAAGCATTTTATCACCGGAATCTCA 686
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 537 GAGGAGCTTATGCGACCAGCATCATAACCATCGTTAAAGCATTTTATCACCGGAACCTCA 596
Query 687 ATCCCGCCGCCGCCATGTTGCTTGTCCAAACCACTCAGTTGTTGGGATATGGATGGGCGG 746
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 597 ATCCCGCCGCGGCCATGTTGCTTCTGCAAACCACTCAGTTGTTGGGATATGGATGGGCGG 656
Query 747 GTATGTTCAGGAAATACCTAGTGGACTCACCTTACATGTGGTGGCCTGCAAATCTTGTTC 806
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GTATGTTCAGGAAATTCCTAGTGGACTCACCTTACATGTGGTGGCCTGCAAATCTTGTTC 716
Query 807 AAGTCTCTCTCTTTAGAGCCTTACATGAGAAGGAGGAGAAGCGTGAAGGAAAACAAACGA 866
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 717 AAGTCTCTCTCTTTAGAGCCTTGCATGAGAAGGAGGAGAAGCGTGAAGGCAAACAAAC-A 775
Query 867 A-ACTTAGATTCTTCTTGATAGTCTTCTTCCTGAGCTTCACTTACTACATAGTCCCAGGC 925
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AGACTTAGATTCTTCTTAATAGTCTTCTTCCTGAGCTTCACTTACTACATAGTCCCAGGC 835
Query 926 TATCTTTTCCCTTCCATCTCATATCTCTCCTTTGTCTGCTGGATATGGACCCGCTCTGTA 985
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 836 TATCTTTTCCCTTCCATCTCATCCCTCTCCTTTGTCTGCTGGATATGGACCCGCTCCGTG 895
Query 986 ACCGCTCAACAGATCGGTTCAGGGCTGCACGGTCTCGGCATTGGCTCATTTGGTCTTGAT 1045
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 896 ACCGCTCAACAGATCGGTTCAGGGTTGCACGGTCTCGGCATTGGCTCATTTGGTCTCGAT 955
Query 1046 TGGTCCACGGTTGCAGGTTTCTTAGGCAGTCCTTTAGCTGTACCGTTCTTCGCTATAGCC 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TGGTCCACGGTTGCAGGTTTCTTAGGCAGTCCTTTAGCTGTACCGTTCTTCGCTATAGCC 1015
Query 1106 AATTCCTTTGGCGGATTTATCATCTTCTTCTACATCATCCTTCCTATCTTCTACTGGAGC 1165
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AATTCCTTTGGCGGATTTGTCATCTTCTTCTACATCATCCTTCCTATCTTCTACTGGAGC 1075
Query 1166 AACGCTTACGAGGCAAAGAAGTTTCCTTTCTATACCTCTCACCCATTTGATCACACTGGT 1225
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1076 AACGCTTACGAGGCAAAGAAGTTTCCTTTTTATACCTCTCACGCATTTGATCACACTGGT 1135
Query 1226 CAGCGTTACAACACCACTCGTATCCTCAACCAGAAAACATTCAATATTGATCTTCCTGCT 1285
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||
Sbjct 1136 CAGCGTTACAACACCACTCGTATCCTCAACCATAAAACATTTGATATTGATCTTCCCGCT 1195
Query 1286 TACGAAAGCTATAGCAAGCTTTACCTTAGCATTCTGTTTGCTCTGATCTATGGGCTCAGC 1345
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1196 TACGAAAGCTATAGCAAGCTTTACCTTAGCATTCTGTTTGCTCTGATTTATGGACTCAGC 1255
Query 1346 TTCGGTACCCTTACCGCAACCATTTCTCATGTCGCCCTCTTTGACGGAAAGTTTATCTGG 1405
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1256 TTCGGCACCCTTACCGCAACCATTTCTCACGTCGCCCTCTTTGACGGAAAGTTTATTTGG 1315
Query 1406 GAGCTGTGGAAGAAGGCAACATTGACGACAAAGGACAAGTTTGGAGATGTGCATACAAGA 1465
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1316 GAGCTGTGGAAGAAGGCAACATTGGCGACAAAGGACAAGTTTGGAGATGTGCATACAAGA 1375
Query 1466 TTGATGAAGAAGAATTATAAGGAAGTACCTCAATGGTGGTTCGTTGCGGTTCTCGCTGCT 1525
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1376 CTGATGAAGAAGAATTATAAGGAAGTACCTCAATGGTGGTTCGTAGCGGTTCTCGCTGTT 1435
Query 1526 TCCTTTGTGCTAGCTCTTTATGCATGTGAGGGATTTGGCAAACAGCTTCAGCTCCCATGG 1585
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 1436 TCCTTTGTGCTAGCTCTTTACGCATGTGAGGGATTTGGCAAACAGCTTCAGCTTCCGTGG 1495
Query 1586 TGGGGACTTTTACTCGCTTGTGCCATCGCCTTTACCTTCACTTTGCCTATTGGAGTTATC 1645
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TGGGGACTTCTACTCGCTTGCGCCATCGCCTTTACCTTCACTTTGCCTATTGGAGTTATC 1555
Query 1646 CTAGCGACCACAAACCAGCGAATGGGTCTTAATGTTATATCGGAACTGATCATCGGGTTC 1705
||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1556 CTAGCAACCACAAACCAGAAAATGGGTCTTAATGTTATATCGGAACTGATCATAGGGTTC 1615
Query 1706 TTGTATCCGGGAAAGCCACTTGCCAATGTGGCTTTTAAGACTTATGGTTCTGTGAGTATA 1765
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1616 TTGTATCCGGGAAAGCCACTTGCCAATGTGACTTTTAAGACTTATGGTACTGTGAGTAT- 1674
Query 1766 G-CTCAAGCCTTGTACTTTGTCGGAGACTTCAAACTTGGCCACTACATGAAGATTCCTCC 1824
| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1675 GTCTCAAGCCTTGAACTTTGTGGGAGACTTCAAACTTGGCCACTACATGAAGATTCCTCC 1734
Query 1825 GAGATCTATGTTCATCGTTCAACTCGTTGCGACTATTGTTGCTTCAACTGTCTCCTTCGG 1884
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1735 GAGATCTATGTTCCTCGTTCAACTCGTTGCGACTATTGTTGCTTCAACTGTCTCCTTTGG 1794
Query 1885 GACCACATGGTGGTTGCTTTCTTCAGTCGAGAACATCTGTAACACAGATATGCTCCCAAA 1944
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1795 GACCACATGGTGGCTGCTTTCTTCAGTCGAGAACATCTGTAACACAGATAAGCTCCCAAA 1854
Query 1945 GAGTAGTCCGTGGACTTGCCCTGGGGATGTAGTGTTCTACAACGCGTCGATCATTTGGGG 2004
|||||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||
Sbjct 1855 GAGTAGTCCGTGGACTTGCCCTGGAGATGAAGTATTCTACAACGCGTCAATCATTTGGGG 1914
Query 2005 AATCATCGGTCCTGGAAGGATGTTCACAAGTAAAGGTATATACCCCGGGATGAACTGGTT 2064
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1915 AATCATCGGTCCTGGAAGGATGTTCACAAGTAAAGGTGTTTACCCCGGGATGAACTGGTT 1974
Query 2065 CTTCCTCATTGGCTTCCTTGCTCCTGTCCCGGTCTGGTTCTTTGCAAGGAAATTCCCGGA 2124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 CTTCCTCATTGGCCTCCTTGCTCCTGTCCCGGTCTGGTTCTTTGCAAGGAAATTCCCGGA 2034
Query 2125 GAAGAAGTGGATACATCAGATTCATATTCCCTTGATCTTCTCAGGGGCTAATGTGATGCC 2184
||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 2035 GAAGAAGTGGATACAGCTTATTCATATTCCCTTGATCTTCTCAGGGGCTAATGCGATGCC 2094
Query 2185 AATGGCCAAGGCTGTGCATTACTGGTCGTGGTTCGCTGTTGGGATCGTGTTCAACTACTA 2244
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 2095 AATGGCCAAGGCTGTGCATTACTGGTCGTGGTTCGTTGTCGGGATCGTGTTCAACTACTA 2154
Query 2245 TATCTTCAGGAGGTACAA-GGGATGGTGGGCAAGGCATAACTACATCCTCTCTGCAGCTC 2303
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 2155 TATCTTCAGGAGGTACAAAGGG-TGGTGGGCAAGGCATAACTACATCCTCTCTGCAGCTC 2213
Query 2304 TTGATGCAGGCACTGCGGTTATGGGAGTGTTGATCTACTTTGCGTTACAGAACAATAACA 2363
||||||||||||| ||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct 2214 TTGATGCAGGCACAGCGATTATGGGAGTGTTGATCTACTTTACGTTGCAGAACAATAACA 2273
Query 2364 TAAGCTTACCAGATTGGTGGGGGAATGAGAACACAGACCATTGCCCTTTGGCAAATTGCC 2423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 TAAGCTTACCAGATTGGTGGGGGAATGAGAACACAGACCATTGCCCTTTGGCAAATTGCC 2333
Query 2424 CAACAGAGAAAGGGATCGTCGCTAAGGGCTGCCCGGTGTTCTAAAACCTTGTTGCAGTTT 2483
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2334 CGACAGAGAAAGGGATCGTCGCTAAGGGCTGCCCGGTGTTCTAAAACCTTGTTGCAGTTC 2393
Query 2484 AACATTATCTCTGTAGTTTCTCATACCTGCAGGTGAGGGACAGTTACTGCAAAGTCGTTT 2543
|||||| |||||| ||||||||| |||||||||||| ||| |||||||| |||| ||||
Sbjct 2394 AACATTTTCTCTGGAGTTTCTCAGACCTGCAGGTGAAAGACTGTTACTGCCAAGTGGTTT 2453
Query 2544 GGTGGCCATAATAATA 2559
||| ||||||||||||
Sbjct 2454 GGTTGCCATAATAATA 2469
> Ahg495675 jgi|Araly1|495675|fgenesh2_kg.8__1491__AT5G55930.1
Length=2768
Score = 1605 bits (869), Expect = 0.0
Identities = 1789/2226 (80%), Gaps = 92/2226 (4%)
Strand=Plus/Plus
Query 251 GAGTCCAAGATCGTCAT--A-GC-CGATGAAGAAG--AA-GAGGATGAAAACGACAGTCC 303
|||||||||||||| || | || || ||||||| || ||||| || || || | |||
Sbjct 271 GAGTCCAAGATCGTAATCAATGCAGGA-GAAGAAGAAAAGGAGGAGGAGAATGATAATCC 329
Query 304 AATCGAAGAGGTCCGTTTAACCGTACCGATAACCGACGATCCATCTCTACCAGTTTTGAC 363
|| ||||| ||||| ||||| ||||||||||||||||||||| | || || ||| | ||
Sbjct 330 GATTGAAGAAGTCCGGTTAACGGTACCGATAACCGACGATCCAACACTGCCGGTTCTAAC 389
Query 364 ATTCCGTACATGG-TTCTTAGGAATGGTTTCTTGCGTGGTACTCGCGTTCGTGAACAATT 422
||| || |||||| ||||| ||| | | |||||| | | || || ||||||||| | |
Sbjct 390 ATTTCGAACATGGTTTCTT-GGACTTCTCTCTTGCATCTTGCTTGCTTTCGTGAACCAGT 448
Query 423 TCTTCGGTTACCGGTCGAACCCGCTCACGGTATCTTCAGTCG-TGGCTCAGATCATCACT 481
||||| ||| ||||||||||| ||| |||||||||||| | | || |||||| | ||
Sbjct 449 TCTTCAGTTTCCGGTCGAACCAGCTTTGGGTATCTTCAGTTGCT-GCGCAGATCGTGACC 507
Query 482 CTCCCTCT-AGGAAAGCTCATGGCCACGACTCTACC-AACAACAAAACTC-CGTTTACCT 538
||||| || ||||| |||||||| | ||| ||||| | ||| ||| || |||| |||
Sbjct 508 CTCCCGCTGGGGAAA-CTCATGGCGAAGACGCTACCGACCAA-GAAATTCGGGTTT-CCT 564
Query 539 GGTACAAATTGGTCGTGTTCGTTGAACCCTGGACCATTCAACATGAAGGAACATGTACTG 598
|| || ||||||||||| || ||||||||||| || ||||| ||||| |||||||| ||
Sbjct 565 GGGACGAATTGGTCGTGGTCATTGAACCCTGGTCCGTTCAATATGAAAGAACATGTTCTT 624
Query 599 ATCACTATATTCGCTAATACCGGAGCTGGAGGAGCTTATGCCACCAGCATCCTAACCATC 658
|| || ||||| |||||||||||||||||||||| ||| ||||| || || | |||||
Sbjct 625 ATTACAATATTTGCTAATACCGGAGCTGGAGGAGTTTACGCCACAAGTATTATTACCATT 684
Query 659 GTTAAAGCATTTTATC-ACCG-GAATCTCAATCCCGCCGCCGCCATGTTGCTTGTC-CAA 715
|||||||| ||||| | |||| || |||||| ||||||||| ||||||| | | |||
Sbjct 685 GTTAAAGCTTTTTA-CAACCGTCAA-CTCAATGTCGCCGCCGCGATGTTGC-TCACACAA 741
Query 716 ACCACTCAGTTGTTGGGATATGGATGGGCGGGTATGTTCAGGAAATACCTAGTGGACTCA 775
||||||||||||||||||||||||||||| || || |||||||| | ||| ||||| |||
Sbjct 742 ACCACTCAGTTGTTGGGATATGGATGGGCTGGAATTTTCAGGAAGTTCCTTGTGGATTCA 801
Query 776 CCTTACATGTGGTGGCC-TGCAAATCTTGTTCAAGTCTCTCTCTTTAGAGCCTTACATGA 834
|| || ||||||||||| | ||||||| ||||||||||| || |||||||| ||||||||
Sbjct 802 CCGTATATGTGGTGGCCGT-CAAATCTGGTTCAAGTCTCACTGTTTAGAGCTTTACATGA 860
Query 835 GAAGGAGGAGA-AGCGTGAAGGAAAACAAACGAAACTT-AGATTCTTCTTGATAGTCTTC 892
||||||||| | | |||| ||||||| || || ||||||||| | || ||||||
Sbjct 861 GAAGGAGGATCTA-CAAAAAGGGCAACAAAC-AAGGTTTAGATTCTTCATCATTGTCTTC 918
Query 893 TTCCTGAGCTTCACTTACTACATAGTCCCAGGCTATCTTTTCCCTTCCATCTCAT--ATC 950
| ||||||| ||||||||||| |||| ||||| ||||||||||||||||| ||
Sbjct 919 GGCGTGAGCTTTGCTTACTACATAATCCCCGGCTACCTTTTCCCTTCCATCTCCGCGAT- 977
Query 951 TCTCCTTTGTCTGCTGGATATGGACCCGCTCTGTAACCGCTCA-ACAGATCGGTTCAGGG 1009
| || ||||| |||||||| |||| |||| || |||||||| | | ||||||| |||
Sbjct 978 T-TCATTTGTTTGCTGGATTTGGAAAAGCTCAGTGACCGCTCAGATTG-TCGGTTCGGGG 1035
Query 1010 CTGCACGG-TCTCGGCATTGGCTCATTTGGTCTTGATTGGTCCACGGTTGCAGGTTTCTT 1068
|| || || | | || ||||| || ||||||||||| |||||||| ||||| ||||||||
Sbjct 1036 CT-CAAGGGTTTAGGAATTGGTTCGTTTGGTCTTGACTGGTCCACAGTTGCTGGTTTCTT 1094
Query 1069 AGGCAGTCCTTTAGCTGTACCGTTCTTCGCTATAGCCAA-TTCCTTTGGCGGATT-TATC 1126
||||||||| || |||||||| |||||||| || ||||| ||| ||||||||||| | ||
Sbjct 1095 AGGCAGTCCATTGGCTGTACCATTCTTCGCCATTGCCAACTTC-TTTGGCGGATTCT-TC 1152
Query 1127 ATCTTCTTCTACATCATCCTTCCTATCTTCTACTGGAGC-AACGCTTACGAGGCAAAGAA 1185
||||| || ||||| | || |||||||||||||||| | || ||||| || ||| ||||
Sbjct 1153 ATCTTTTTATACATTGTTCTGCCTATCTTCTACTGGA-CTAATGCTTATGATGCACAGAA 1211
Query 1186 GTTTCCTTTCTATACCTCTCAC-CCATTTGATCACACTGGTCAG-CGTTACAACACCACT 1243
|||||| |||||||| || ||| || |||||||| ||||| || | | | |||| ||
Sbjct 1212 GTTTCCGTTCTATACTTCACACACC-TTTGATCAGACTGGACACACCT-ATAACATTACC 1269
Query 1244 CGTATCCTCAACCAGAA-AACATTCAATATTGATCTTC-CTGCTTACGAAAGCT-ATAGC 1300
||||||||||| |||| || || | ||| |||| | |||||| || | | | |||
Sbjct 1270 CGTATCCTCAATGAGAAGAATTTTGA-TATCAATCTAGAC-GCTTAC-AACGGTTACAGC 1326
Query 1301 AAGCTTTACCTT-AGCATTCTGTTTGC-TCTGATCTATGGGCTCAGCTTCGGTACCCTTA 1358
||||| || || || | |||| || | || ||||||| |||||||||||| | |||
Sbjct 1327 AAGCTCTAT-TTGAGTGTGATGTTCGCGT-TGCTCTATGGACTCAGCTTCGGTTCTCTTT 1384
Query 1359 CCGCAACCATTTCTCATGTCGCCCTCTTTGACGGAAAGTTTATCTGGG-AGCTGTGGAAG 1417
||| ||||| |||||||||||||||| ||| ||||||||||| |||| | ||||||||
Sbjct 1385 TCGCTACCATCTCTCATGTCGCCCTCTATGATGGAAAGTTTATATGGGGAA-TGTGGAAG 1443
Query 1418 AAGGCAACATT-GACGACAAAGGACAAGTTTGGAGATGTGCATACAAGATTGATGAAGAA 1476
||||||| | | | ||||||||||||| |||||||||||| | ||||| ||||||||
Sbjct 1444 AAGGCAAAAACAG-CAACAAAGGACAAGTACGGAGATGTGCATTCGAGATTAATGAAGAA 1502
Query 1477 GAATTATAAGGAAGTACCTCAATGGTGGTTCGTTGCGGTTCTCGCTGCTTCCTTTG-TGC 1535
||||||| || ||||||||||||||||||| | | ||||| | | |||||||| |
Sbjct 1503 GAATTATCAGTCAGTACCTCAATGGTGGTTCATCGTAGTTCTAGTTATTTCCTTTGCTT- 1561
Query 1536 TAGCTCTTTATGCATGTGAGGGATTTGGCAAACAGCTTCAGCTCCCATGGTGGGGACTTT 1595
| || || ||||| ||||| || |||| ||||||||||||||| |||||||||||||||
Sbjct 1562 TCGCACTCTATGCTTGTGAAGGCTTTGACAAACAGCTTCAGCTTCCATGGTGGGGACTTA 1621
Query 1596 TACTCGCTTGTGCCATCGCCTT-TACCTTCACTTTGCCTATTGGAGTTATCCTAGCGACC 1654
||||||| || ||||||||||| | | ||||| |||||||| |||||||||| ||| ||
Sbjct 1622 TACTCGCGTGCGCCATCGCCTTGTTC-TTCACATTGCCTATCGGAGTTATCCAAGCAACT 1680
Query 1655 ACAAACCAGCGAATGGGTCTTAATGTTATATCGGAACTGATCATCGGGTTCTTGTATCCG 1714
|| ||||||| ||||||||||||||||||| | |||||||||||||||| ||| || ||
Sbjct 1681 ACGAACCAGCAAATGGGTCTTAATGTTATAACAGAACTGATCATCGGGTACTTATACCCA 1740
Query 1715 GGAAAGCCACTTGCCAATGTGGCTTTTAAGACTTATGGTT-CTGTGAGTATAG-CTCAAG 1772
||||||||||| |||||||| ||||| ||||| ||||| | | | ||||| | ||||||
Sbjct 1741 GGAAAGCCACTAGCCAATGTCGCTTTCAAGACATATGGATACA-TCAGTAT-GTCTCAAG 1798
Query 1773 CCTTGTACTTTGTCGGAGACTTCAAACTTGGCCACTACATGAAGATTCCTCCGAGATCTA 1832
||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| |
Sbjct 1799 CCTTGTACTTTGTAGGAGACTTCAAGCTTGGTCACTACATGAAGATTCCTCCAAGATCAA 1858
Query 1833 TGTTCATCGTTCAACTCGTTGCGACTATTGTTGCTTCAACTGTCTCCTTCGGGACCACAT 1892
|||||||||| || || ||||| ||| | ||||| |||||||||| |||||| || || |
Sbjct 1859 TGTTCATCGTCCAGCTTGTTGCAACTGTGGTTGCCTCAACTGTCTGCTTCGGAACAACTT 1918
Query 1893 GGTGGTTGCTTT-CTTCAGTCGAGAACATCTGTAACACAGATATGCTCCCAAAGAGTAGT 1951
||||| | | || | || || |||||||| |||||| ||| ||||||| | |||||
Sbjct 1919 GGTGGCT-CATTACATCTGTAGAGAACATATGTAACGTGGATTTGCTCCCGGTGGGTAGT 1977
Query 1952 CCGTGGACTTGCCCTGGGGATGTAGTGTTCTACAACGCGTCGATCATTTGGGGAATCATC 2011
|| |||||||| ||||| |||| |||||||||||| || || ||||| |||||| | ||
Sbjct 1978 CCATGGACTTGTCCTGGAGATGAAGTGTTCTACAATGCATCAATCATATGGGGAGTGATT 2037
Query 2012 GGTCCTGGAAGGATGTTCAC-AA-GTAAAGGTATATACCCCGGGATGAACTGGTTCTTCC 2069
||||| || || ||||| || || | || ||||| || ||||||||||||||||||||||
Sbjct 2038 GGTCCAGGGAGAATGTTTACCAAAG-AA-GGTATCTATCCCGGGATGAACTGGTTCTTCC 2095
Query 2070 TCATTGG-CTTCCTTGCTCCTGTCCCGGTCTGGTTCTT-T-GCAAGGAAATTCCCGGAGA 2126
| || || || ||||||||| || || |||||| | | | | ||| || ||||| ||||
Sbjct 2096 TTATCGGTCT-CCTTGCTCCAGTTCCTTTCTGGTACCTATCG-AAG-AAGTTCCCAGAGA 2152
Query 2127 AGAAGTGGATACATCAGATTCATATTCCCTTGATCTTCTCAGG-GGCTAATGTG-A-TGC 2183
|||| ||| || | ||||| ||| |||||||||||||||| || || ||| | | | |||
Sbjct 2153 AGAAATGGCTAAAACAGATCCATGTTCCCTTGATCTTCTC-GGCGG-TAA-GCGCAATGC 2209
Query 2184 CA-ATGGCCAAGGCTGTGCATTACTGGTCGTGGTTCG-CTGTTGGGATCGTGTTCAACTA 2241
|| | | | |||||||||||||||||||| ||| | | |||||| | |||||||||||
Sbjct 2210 CACAAG-CTAAGGCTGTGCATTACTGGTCCTGGGCCATC-GTTGGGGTTGTGTTCAACTA 2267
Query 2242 CTATATCTTCAGGAGGTACAAGGGATGGTGGGCAAGGCATAACTACATCCTCTCTGCAGC 2301
||| ||||||||||||| || |||||||| ||||| ||||||||||||||||||||
Sbjct 2268 CTACATCTTCAGGAGGTTTAAAACTTGGTGGGCGAGGCACAACTACATCCTCTCTGCAGC 2327
Query 2302 TCTTGATGCAGGCACTGCGGTTATGGGAGTGTTGATCTACTTTGCGTTACAGAACAATAA 2361
||||||||||| |||||| |||||||||||||||| | ||| || || ||||||||| |
Sbjct 2328 GCTTGATGCAGGTACTGCGATTATGGGAGTGTTGATATTCTTCGCATTTCAGAACAATGA 2387
Query 2362 CATAAGCTTACCAGATTGGTGGGGGAATGAGAACACAGACCATTGCCCTTTGGCAAATTG 2421
||||||||||| |||||||||||| |||||| |||||||||||||| | || ||||
Sbjct 2388 TATAAGCTTACCTGATTGGTGGGGGCTTGAGAATTCAGACCATTGCCCTCTAGCGCATTG 2447
Query 2422 CCCAAC 2427
||||||
Sbjct 2448 CCCAAC 2453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99110817490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5