BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26600.1
Length=2450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492148 jgi|Araly1|492148|fgenesh2_kg.7__1581__AT4G26600.1 2678 0.0
Ahg495674 jgi|Araly1|495674|fgenesh2_kg.8__1490__AT5G55920.1 1262 0.0
> Ahg492148 jgi|Araly1|492148|fgenesh2_kg.7__1581__AT4G26600.1
Length=2189
Score = 2678 bits (1450), Expect = 0.0
Identities = 1725/1855 (93%), Gaps = 30/1855 (2%)
Strand=Plus/Plus
Query 363 gatgatgatgatgatgatgatgaGGATGCAGAACCCTTAGCTGAAGACTTTCTCGATGGT 422
||||||||||||||||||| ||||||| ||||||| ||||||| |||||| ||||||||
Sbjct 313 GATGATGATGATGATGATGGTGAGGATACAGAACCTTTAGCTGGCGACTTTATCGATGGT 372
Query 423 AGCGATAATGAGGAGGTAACCATGGGTTCTGATTTGGATTCTGACTCTGGTGGATCCAAA 482
|||||| | ||||||| | | | |||||||||||||| |||||||||||||
Sbjct 373 AGCGATCACGAGGAGG-GA--A-------T--TTTGGATTCTGACTTTGGTGGATCCAAA 420
Query 483 CTCGAGAGGAAATCTAGAGCTATTGATAGAAAACGTAAAAAGGAGGTACAAGATGCAGAC 542
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 421 CTCGAGAGGAAATCTAGAGCTATTGATAGAAAACGTAAAAAGGAGGAAAAAGATGCAGAA 480
Query 543 GATGAATTCAAGATGAACATTAAGGAGAA-ACCTGATGAGTTTCAGCTACCAACCCAAAA 601
|||||||||||||||||||| ||||| || |||||||||||||||||||||||| |||||
Sbjct 481 GATGAATTCAAGATGAACATCAAGGA-AATACCTGATGAGTTTCAGCTACCAACACAAAA 539
Query 602 GGAACTTGAAGAAGAGGCACGTCGGCCGCCAGATCTTCCTAGCTTGCAAATGAGGATAAG 661
|||||||||||||||||||||| |||| || |||||||||||||||||||| ||||||||
Sbjct 540 GGAACTTGAAGAAGAGGCACGTAGGCCACCTGATCTTCCTAGCTTGCAAATCAGGATAAG 599
Query 662 AGAGATTGTTAGAATCCTGTCGAATTTTAAGGACTTGAAGCCAAAAGGAGACAAGCACGA 721
||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 AGAGATTGTTAGAGTGCTGTCGAATTTTAAGGACTTGAGGCCAAAAGGAGACAAGCACGA 659
Query 722 GAGGAATGATTATGTTGGACAGCTTAAAGCTGATCTTAGTTCTTACTACGGCTATAATGA 781
||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 660 GAGGAATGATTATGTTGAACAGCTTAAAGCTGATCTTGGTTCTTACTACGGTTATAATGA 719
Query 782 GTTTCTTATTGGAACTTTAATTGAGATGTTTCCTGTTGTTGAACTCATGGAACTAATCGA 841
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 GTTTCTTATTGGAACTTTGATTGAGATGTTTCCTGTTGTTGAACTCATGGAACTAATTGA 779
Query 842 AGCTTTTGAAAAGAAAAGACCTACATCTATACGTACTAACACTCTTAAGACTCGAAGACG 901
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 AGCTTTTGAAAAGAAAAGACCTACATCTATCCGTACTAACACTCTTAAGACTCGAAGACG 839
Query 902 GGATCTGGCTGATATACTTTTGAACAGAGGAGTTAATCTAGACCCATTAAGCAAGTGGTC 961
||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 840 GGATCTGGCTGATGTACTTTTGAATAGAGGAGTTAATCTTGACCCGTTAAGCAAGTGGTC 899
Query 962 AAAAGTTGGACTTATCGTTTATGATTCACAAGTTCCGATTGGTGCAACTCCTGAATATTT 1021
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 900 AAAAGTTGGACTTATCGTTTATGATTCCCAAGTTCCGATTGGTGCAACTCCTGAATATTT 959
Query 1022 GGCAGGATTCTATATGTTGCAAAGTGCTAGTTCGTTCTTGCCAGTGATGGCCCTTGCTCC 1081
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 960 GGCGGGTTTCTATATGTTGCAAAGTGCTAGTTCCTTCTTGCCAGTGATGGCCCTTGCTCC 1019
Query 1082 TCGAGAAAAAGAACGAGTTGTGGACATGGCTGCTGCCCCTGGTGGTAAAACAACATATGT 1141
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 TCGGGAAAAAGAGCGAGTTGTGGACATGGCTGCTGCCCCTGGTGGTAAAACAACCTATGT 1079
Query 1142 TGCTGCACTAATGAAAAATACAGGCATAATATATGCAAACGAGATGAAAGTACCTAGGCT 1201
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 TGCTGCACTAATGAAAAATACAGGAATAATATATGCAAACGAGATGAAAGTACCTAGGCT 1139
Query 1202 TAAGTCACTTTCTGCCAATCTACATCGCATGGGAGTGACAAATACCATAGTTTGTAACTA 1261
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1140 TAAGTCACTTTCTGCCAATCTGCATCGCATGGGGGTGACAAATACCATAGTTTGTAACTA 1199
Query 1262 TGACGGACGAGAGCTAACCAAAGTTTTAGGTCAGAGCTCGGTTGATAGAGTATTGCTGGA 1321
||| ||| |||||||| |||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1200 TGATGGAAGAGAGCTACCCAAGGTTTTAGGTCAGAACTCGGTTGATAGAGTATTGCTGGA 1259
Query 1322 TGCTCCCTGCAGTGGAACTGGAGTTATATCAAAAGACGAATCAGTTAAAACTTCCAAAAG 1381
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1260 TGCTCCTTGCAGTGGAACTGGAGTGATATCAAAAGATGAATCAGTTAAAACTTCCAAAAG 1319
Query 1382 TGCTGATGACATAAAGAAATTTGCCCATTTGCAAAAGCAACTTATACTTGGTGCGATTGA 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGCTGATGACATAAAGAAATTTGCCCATTTGCAAAAGCAACTTATACTTGGTGCGATTGA 1379
Query 1442 TTTGGTAGACGCCAATTCCAAAACCGGTGGATATATTGTTTACTCAACATGTTCAGTTAT 1501
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1380 TTTGGTAGACGCCAATTCCAAAACCGGTGGATATATTGTTTACTCAACATGCTCAATTAT 1439
Query 1502 GATACCCGAGAACGAAGCTGTCATCGATTATGCTCTGAAAAACAGGGATGTTAAACTCGT 1561
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GATTCCCGAGAACGAAGCTGTCATCGATTATGCTCTGAAAAACAGGGATGTTAAACTCGT 1499
Query 1562 TCCATGTGGACTTGATTTTGGCCGACCAGGATTTAGCAGTTTTAGAGAACACCGGTTCCA 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TCCATGTGGACTTGATTTTGGCCGACCAGGATTTAGCAGTTTTAGAGAACACCGGTTCCA 1559
Query 1622 CCCTTCTTTAGAGAAGACTAGACGTTTCTATCCTCACGTGCACAACATGGATGGATTCTT 1681
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1560 CCCTTCTTTAGAGAAGACAAGACGTTTCTATCCTCACGTACACAACATGGATGGATTCTT 1619
Query 1682 TGTTGCAAAGCTGAAGAAGATGAGCAATGCAATGCAGCCTTCAGGAAATGATGAGCCAGC 1741
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TGTTGCTAAGCTGAAGAAGATGAGCAATGCAATGCAGCCTTCAGGAAATGATGAGCCAGA 1679
Query 1742 TGTAACAATGGAGCAAGCTCAGGTGTCGTCTAGTGATGATGATGATGAGAAAGCTGAGGC 1801
| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1680 TATAACAATGGAGCAAGCTCAGGTGTCGTCTAGTGATAATGATGATGAGAAAGGTGAGGC 1739
Query 1802 CATTGAGGAGTTGGAGAAGCCACCTGTTGCCAGTGGGCAACCCAAGAGAGAGAGTAACAC 1861
|||||||||||| ||||||||||||||| ||| ||| ||||||||| |||| ||||||||
Sbjct 1740 CATTGAGGAGTTAGAGAAGCCACCTGTTACCAATGGACAACCCAAGCGAGAAAGTAACAC 1799
Query 1862 TAAAGAAGACACgaacaaacgaaaaaat-ccaaggtcaaaggaaattcacaaaggcaaaa 1920
|| |||| ||| |||||||| | ||||| |||||||||||||| ||||| ||||||||||
Sbjct 1800 TAGAGAAAACAAGAACAAAC-AGAAAATTCCAAGGTCAAAGGAGATTCATAAAGGCAAAA 1858
Query 1921 ggaataaaaacacaaaaaccgaaagTGGTAATGTGGAAGAACCCAGGAAGCAAAAGAAGA 1980
|||| ||| |||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1859 GGAACAAATACACAAAAACCGGAAGTAGTAATGTGGAAGAACCCAGGAAGCAAAAGAAGA 1918
Query 1981 AGAGATCACAATGGAAGAATGAGATTGCTCAAGCTAGGGAAGaaaaaagaaaaaCCATGA 2040
|||||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||
Sbjct 1919 AGAGATCACAATGGAAGAATGAAATTGCTCAAGCTAGAGAAGAGAAAAGAAAAGCCATGA 1978
Query 2041 GAGAGAATGCTAAGGAGACGCCAAAGCACAGGGGATAAGAATAGGTTTGAGATCGTGATG 2100
|||||||||||||||||| |||||| ||||||||||||||||| | | | ||||| ||
Sbjct 1979 GAGAGAATGCTAAGGAGAAGCCAAAACACAGGGGATAAGAATA--TA-G-GTTCGTGTTG 2034
Query 2101 CAT---CTTGAA-G-AGTAGAATATTTCGGTGTTCTGGCCATGGCGAAGGACACAAGAAA 2155
||| ||| || | | |||||| |||| ||||| ||| | ||| |||||| ||||||||
Sbjct 2035 CATAAACTT-AATGCAATAGAATCTTTCAGTGTTGTGGTCGTGGTGAAGGAAACAAGAAA 2093
Query 2156 AGAGGCTTCATTGGCTGAGGCCAAGGTATCTATA-CA--A-TGGCTTTCTAGTTT 2206
||||||| | |||||| ||| |||||||||||| | | ||||||| ||||||
Sbjct 2094 GGAGGCTTTAATGGCTGTGGCTAAGGTATCTATAACGGCAGTGGCTTTGTAGTTT 2148
Score = 289 bits (156), Expect = 8e-77
Identities = 283/338 (84%), Gaps = 34/338 (10%)
Strand=Plus/Plus
Query 4 CCTCTGCAATTCTGCTAAACCCTCACGGCGATAAACCC----TAAGTTGTAAAAACCGTA 59
|||||||| || |||||||||||||||||||||||||| ||||||||||| || | |
Sbjct 1 CCTCTGCACTTGTGCTAAACCCTCACGGCGATAAACCCTAATTAAGTTGTAAAGACAGCA 60
Query 60 TCCATGGCTGCTCTTACGCGTAACAAGAAGAAGGGTTCCA-ATTCACAGACTCCGCCACT 118
||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 61 TCCATGGATGCTCTTACGCGTAACAAGAAGAA-GGTGGCACATTCACAGACTCCGCCACT 119
Query 119 GAATAAGCAG-ACTAAGGCGTCTCCGCTGAAGAAGGCGGCTAAAACCCAGAAGCCTCCAT 177
| |||||| | || || ||||||| |||| |||||| ||||| |||||||||||||||
Sbjct 120 GTATAAGC-GTACGAACTCGTCTCCATTGAAAAAGGCGCCTAAATCCCAGAAGCCTCCAT 178
Query 178 TGAAGAAGCAGAGGAAATGTATTTCGGAGAAGAAGCCCCTCAAAAAGCCTGAAGTTTCCA 237
||||||||||||||||| ||||||||||| || | || ||||||||||||||
Sbjct 179 TGAAGAAGCAGAGGAAAGGTATTTCGGAG--GA-G------AA---GCCTGAAGTTTCCA 226
Query 238 CAGACGAG---gaagaagaagaagaagagaaTGAACAGTCTGAT---G-A-A-G--GG-T 285
|||||||| ||||||||||||||||||||||||| ||||||| | | | | || |
Sbjct 227 CAGACGAGAAAGAAGAAGAAGAAGAAGAGAATGAACTGTCTGATCAAGGAGATGAAGGGT 286
Query 286 CTGAATCAGGTTCTGA-TTTGTTCTCtgatggtgatga 322
|||||||||||||||| ||| ||||| |||| ||||||
Sbjct 287 CTGAATCAGGTTCTGACTTT-TTCTCAGATGATGATGA 323
> Ahg495674 jgi|Araly1|495674|fgenesh2_kg.8__1490__AT5G55920.1
Length=2331
Score = 1262 bits (683), Expect = 0.0
Identities = 1262/1528 (83%), Gaps = 94/1528 (6%)
Strand=Plus/Plus
Query 571 AACCTGATGAGTTTCAGCTACCAACCCAAAAGGAACTTGAAGAAGAGGCACGTCGG-CCG 629
||| ||||| ||||| ||||||||| || |||| ||||||||||| || ||| || ||
Sbjct 600 AACATGATGCGTTTCGGCTACCAACTGAAGAGGAGCTTGAAGAAGAAGCTCGT-GGTCCA 658
Query 630 CCAGATCTT-C-CTAGCTTGCAAATGAGGATAA--G-AGAGATTGTTAGAATC-CTG-TC 682
||||||||| | ||| ||| || ||| | || | |||||||||||| | | ||| |
Sbjct 659 CCAGATCTTCCTCTA-CTT---AA-GAGTAGAATTGAAGAGATTGTTAG-AGCTCTGAAC 712
Query 683 GAATTTTAAGGAC-TTGAAGCCAAAAGGAGACAAGCACGAGAGGAATGATTATGTTGGA- 740
||||| |||| | || | ||||||| || || ||| |||||| | || |||| ||
Sbjct 713 -AATTTCAAGG-CTTTCAGGCCAAAA-GATAC---CAC--GAGGAAAGCTTGTGTT-GAC 763
Query 741 CAGCTTAAAGCTGATCTTAGTTCTTACTACGGCTATAATGAG-TTTCTTATTGGAACTTT 799
||||| |||||||||||| ||||||| || || ||||| || |||||||||||||||||
Sbjct 764 CAGCTCAAAGCTGATCTTGGTTCTTATTATGGTTATAA-CAGTTTTCTTATTGGAACTTT 822
Query 800 AATTGAGATGTTTCCTGTTGTTGAACTCATGGAACTAATCGAAGCTTTTGAAAAGAAAAG 859
|||||||||||||| || |||||| |||||||| || ||||||||||||||| ||||
Sbjct 823 GGTTGAGATGTTTCCTCCTGGTGAACTTATGGAACTTATTGAAGCTTTTGAAAAGCAAAG 882
Query 860 ACCTACATCTATACGTACTAACACTCTTAAGACTCGAAGACGGGATCTGGCTGATATACT 919
||||||||||| || |||||||| ||||||||||| ||||||||||| |||||| ||||
Sbjct 883 GCCTACATCTATCCGGACTAACACACTTAAGACTCGTAGACGGGATCTTGCTGATGTACT 942
Query 920 TTTGAACAGAGGAGTTAATCTAGACCCATTAAGCAAGTGGTCAAAAGTTGGACTTATCGT 979
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 943 TTTGAACAGAGGAGTCAATCTAGACCCATTAAGCAAGTGGTCAAAAGTTGGACTTGTTAT 1002
Query 980 TTATGATTCACAAGTTCCGATTGGTGCAACTCCTGAATATTTGGCAGGATT-CTATATG- 1037
|||||||||||||| || || ||||| ||||||||||| ||||| || || ||| |||
Sbjct 1003 CTATGATTCACAAGTCCCAATCGGTGCGACTCCTGAATACTTGGCTGG-TTACTACATGC 1061
Query 1038 TTGCAAAGTGCTAGTTCGTTCTTGCCAGTGATGGCCCTTGCTCCTCGAGAAAAAGAACG- 1096
|| ||| ||||||||||||| |||||||||||||||||||| |||||||| || |||||
Sbjct 1062 TT-CAAGGTGCTAGTTCGTTTTTGCCAGTGATGGCCCTTGCCCCTCGAGAGAATGAACGG 1120
Query 1097 AGTTGTGGACATGGCTGCTGCCCCTGGTGGTAAAACAACATATGTTGCTGCACTAATGAA 1156
| ||||||| | |||||||| ||||||||||||||||| ||| | ||||| ||||||||
Sbjct 1121 A-TTGTGGATGTAGCTGCTGCTCCTGGTGGTAAAACAACTTATATCGCTGCTCTAATGAA 1179
Query 1157 AAATACAGGCATAATATATGCAAACGAGATGAAAGTACCTAGGCTTAAGTCACTTTCTGC 1216
|||||| ||| |||||||||| || |||||||||||||||||||||||||| || ||||
Sbjct 1180 AAATACGGGCTTAATATATGCGAATGAGATGAAAGTACCTAGGCTTAAGTCGCTAACTGC 1239
Query 1217 CAATCTACATCGCATGGGAGTGACAAATACCATAGTTTGTAACTATGACGGACGAGAGCT 1276
|||||| ||||||||||| || |||||||||||||||||||||||||| ||| |||||||
Sbjct 1240 CAATCTGCATCGCATGGGGGTCACAAATACCATAGTTTGTAACTATGATGGAAGAGAGCT 1299
Query 1277 AACCAAAGTTTTAGGTCAGAGCTCGGTTGATAGAGTATTGCTGGATGCTCCCTGCAGTGG 1336
| |||| ||||||||||||| | ||||||||||||||||| ||||||| || ||||||||
Sbjct 1300 ACCCAAGGTTTTAGGTCAGAACACGGTTGATAGAGTATTGTTGGATGCGCCTTGCAGTGG 1359
Query 1337 AACTGGAGTTATATCAAAAGACGAATCAGTTAAAACTTCC-AAAAGTGCTGATGACATAA 1395
|||||| | ||||||||||| ||||||||||||| | | |||| | |||||| ||||
Sbjct 1360 GACTGGAATCATATCAAAAGATGAATCAGTTAAAA-TAACGAAAACCGTTGATGAGATAA 1418
Query 1396 AGAAATTTGCCCATTTGCAAAAGCAACTTAT-ACTTGGTGCGATTGATTTGGTAGACGCC 1454
|||||||||| || |||||||||||||| || ||| | ||| |||||| |||| ||||||
Sbjct 1419 AGAAATTTGCTCACTTGCAAAAGCAACT-ATTACTCGCTGCTATTGATATGGTGGACGCC 1477
Query 1455 AATTCCAAAACCGGTGGATATATTGTTTACTCAACATGTTCAGTTATGAT-ACCCGAGAA 1513
||||||||||||||||||||| | ||||| |||||||||||| ||||| | ||| |||||
Sbjct 1478 AATTCCAAAACCGGTGGATATGTAGTTTATTCAACATGTTCAATTATGGTTACC-GAGAA 1536
Query 1514 CGAAGCTGTCATCGATTATGCTCTGAAAAACAGGGATGTTAAACTCGTTCCATGTGGACT 1573
|||||||||||| || |||||||| ||||| |||||||||||||||||| ||||||||||
Sbjct 1537 CGAAGCTGTCATTGACTATGCTCTTAAAAAGAGGGATGTTAAACTCGTTACATGTGGACT 1596
Query 1574 TGATTTTGGCCGACCAGGATTTAGCAGTTTTAGAGAACACCGGTTCCACCCTTCTTTAGA 1633
||||||||| || |||||||| ||| ||||||||||||||||| || |||||||||||
Sbjct 1597 CGATTTTGGCAGAAAAGGATTTACCAGATTTAGAGAACACCGGTTTCAGCCTTCTTTAGA 1656
Query 1634 GAAGACTAGACGTTTCTATCCTCACGTGCACAACATGGATGGATTCTTTGTTGCAAAGCT 1693
||||||||||||||||||||||| || ||||||||||| ||||| ||||| || |||||
Sbjct 1657 CAAGACTAGACGTTTCTATCCTCATGTACACAACATGGACGGATTTTTTGTGGCGAAGCT 1716
Query 1694 GAAGAAGATGAGCAA--TGCAATGCAGCCTTCAGGAAA-TGATGA-GCCAG-CTGTA-AC 1747
|||||| |||||||| || || ||| ||||| || |||||| | || | ||| |
Sbjct 1717 GAAGAAAATGAGCAACATG-AA-GCAATATTCAG-AAGGTGATGATG--AGGCGGTAGA- 1770
Query 1748 AA-TG--GAGCAAGCTCAGGTGTCGTCTAGTGATGATGATGATGA-GAAAGCTGAGGCCA 1803
|| || ||||||||| | ||||| | ||||||||||||||||| ||| ||||||||||
Sbjct 1771 AACTGTAGAGCAAGCTGAAGTGTC-T--AGTGATGATGATGATGATGAA-GCTGAGGCCA 1826
Query 1804 TTGAGGAG-TTGGAGAAGCCACCTGTTGCCAG-TGGGCAACCCAAGAGAGAGAGTAACAC 1861
|||| ||| ||| ||||||| ||||| || | | ||||||| ||| || | | || |
Sbjct 1827 TTGAAGAGATTG-AGAAGCCTTCTGTT-CCTGATAGGCAACCTAAG-GAAACA--AA-AG 1880
Query 1862 TAAAGAAGACACgaacaaacgaaaaaatc-caaggtcaaaggaaattcacaa-ag-gc-a 1917
||| || | | |||||| |||| | | ||| |||||||| ||||| || | |
Sbjct 1881 -AAA-AA-A-A-GAACAAG-GAAAGACTTGCAAAATCAAAGGAG---CACAAGAGAGGTA 1931
Query 1918 aaa-ggaataa-aaacacaaaaaccgaaa--gTGGTAATGTGGAAG--AACCCA-GGAAG 1970
||| ||| ||| ||| ||||| | |||| |||| || | | | || || |||||
Sbjct 1932 AAAAGGA-TAAGAAAG-CAAAATCTGAAAATGTGG-AA-GAGCCATCTAAAGCAAGGAAG 1987
Query 1971 CAAAAGAAGAAGAGATCACAATGGAAGAATGAGATTGCTCAAGCTAGGGAAGaaaaaaga 2030
||||||||||||||||| |||||||||| || |||||||||||||||||||| ||||||
Sbjct 1988 CAAAAGAAGAAGAGATCTGAATGGAAGAACGAAATTGCTCAAGCTAGGGAAGAGAAAAGA 2047
Query 2031 aaaaCCATGAGAGAGAATGCT-AAGGAG 2057
| | ||||| ||||||| | | ||||||
Sbjct 2048 ATAGCCATGCGAGAGAAGG-TGAAGGAG 2074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92330753880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5