BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26610.1
Length=2003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492147 jgi|Araly1|492147|fgenesh2_kg.7__1580__AT4G26610.1 3022 0.0
Ahg495673 jgi|Araly1|495673|fgenesh2_kg.8__1489__AT5G55910.1 1279 0.0
> Ahg492147 jgi|Araly1|492147|fgenesh2_kg.7__1580__AT4G26610.1
Length=1996
Score = 3022 bits (1636), Expect = 0.0
Identities = 1899/2018 (94%), Gaps = 50/2018 (2%)
Strand=Plus/Plus
Query 2 GCTTTGACCAActctttcctctcttttcatggtagacccaactctctcatttcttactct 61
|||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTTTGACCACCTCTTT-C-CTCATTTCATGGTAGACCCAACTCTCTCATTTCTTACTCT 58
Query 62 ctgattca--tctctctctctctctTCATTTCCATGGAAGGAAGGTGATGAGCTTTCTCA 119
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 59 CTGATTCATCTCTCTCTCTCTCTCTTCATTTCCATGGAAGGAAGGTGATGAG-TTT-TC- 115
Query 120 ATCTCT-CTTTACTGATTCTTAATGAAAGTCATCTCCTTTCTCTTTGGTATCCCTTTTCT 178
||| | | | | ||||| || ||||||||| |||||||||| |||||||||||||||||
Sbjct 116 -TCTTTAC-TGATTGATTATTGATGAAAGTCCTCTCCTTTCTTTTTGGTATCCCTTTTCT 173
Query 179 TC-TTCTCTGCTTAATTCCTGACC-AAA-AA-T-TGTGACAAGATCTTTCAATCCAAAAG 233
|| |||||||| |||||||||||| ||| || | ||||||||||||||||||||| ||||
Sbjct 174 TCTTTCTCTGCCTAATTCCTGACCAAAACAATTGTGTGACAAGATCTTTCAATCCCAAAG 233
Query 234 CTATATAC-ATTAA-G-AG--CTCAGGTCACTATCTGACGGGATCCGTGACAATAGTGGT 288
|||| | | | || | || ||||| |||||| ||||||| ||||||| |||||||
Sbjct 234 CTAT-TTCGCTCAATGCAGACCTCAGATCACTA----ACGGGATACGTGACAGTAGTGGT 288
Query 289 TACTGGAGTCAAAAGCAGCTCCTTGAATCTTGAGTGTTAAGTAGATAGGTAAGGTAACCG 348
|| || ||||| ||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 289 GACCGGGGTCAAGAGCAGCTCCTTGAATCTTGAGTGTTAAGTAGATAGGT-A--T--CCA 343
Query 349 TTCATGGCCTCGAAGTATGGTTCTGGAGTTCTCCCAGAAAATAAGAAGGAAAAGGGCGAT 408
||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||
Sbjct 344 TTCATGGCCTCCAAGTCTGGTTCTGGAGTTCTCCCTGAAAATAATAAGGAAAAGGGCGAT 403
Query 409 AAGGAAACCCCGGAA--A-CA---TCTTATTCCAGTCAAAGTGTCTCAGTAAACACTTTG 462
||||||||||| ||| | || ||| |||||||||||||||||||||||| |||||||
Sbjct 404 AAGGAAACCCCCGAAGCATCACTTTCTAATTCCAGTCAAAGTGTCTCAGTAAGCACTTTG 463
Query 463 GCAGATCAAGTATCTTCAACTTTGTCTTTTGCTCCAAGCAGCGACAGTAAAACTGGAGGT 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 464 GCAGATCAAGTATCTTCAACTTTGTCTTTTGCTCCAAGCAGCGACAGTAAAACTGGA-GT 522
Query 523 -GAAGTTAAATTTAATGAAAAGTCTGA--T--C--AGAGCGGGAAGAGTAACACATGTAG 575
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 523 AGAAGTTAAATTTAATGAAAAGTCTGATCTCCCTGAGAGCGGGAAGAGTAACACATGTAG 582
Query 576 ACCAAGCACAAGCAGTGATATCAGTGATGAGAGCACATGTAGCAGCTTTAGTGGTAACAA 635
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 583 ACCAAGCACAAGCAGTGATATCAGTGATGAGAGCACATGTAGCAGCTTAAGTAGCAACAA 642
Query 636 CAAGCCTCACAAGGCGAATGACGTGAGATGGGAAGCAATTCAAGCTGTCCGAACGAAACA 695
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 643 CAAGCCTCACAAGGCGAATGACGTGAGATGGGAAGCAATACAAGCTGTCCGAACGAAACA 702
Query 696 TGGCGTATTGGGGTTGAACCATTTTAGGCTCTTGAAGAGGTTAGGGTGTGGGGATATCGG 755
||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 703 TGGTGTATTGGGCTTGAACCATTTTAGGCTCCTGAAGAGGTTAGGGTGTGGGGATATCGG 762
Query 756 AACTGTCCACCTTGCTGAGTTGCACGGAACAAGGTGtttttttGCAATGAAGGTTATGGA 815
|||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 763 AACTGTTCATCTTGCTGAGTTGCACGGAACAAGGTGTTATTTTGCAATGAAGGTTATGGA 822
Query 816 CAAAGGGGCTTTGGCTAGCCGTAAAAAGCTTCTTAGAGCTCAGACCGAGAGGGAGATATT 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 CAAAGGGGCTTTGGCTAGCCGTAAAAAGCTTCTTAGAGCTCAGACCGAGAGGGAGATATT 882
Query 876 GCAGTGTCTTGACCACCCTTTTCTCCCAACTTTGTATAGTCACTTCGAGACTGAGAAGTT 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GCAGTGTCTTGACCACCCTTTTCTCCCAACTTTGTATAGTCACTTCGAGACTGAGAAGTT 942
Query 936 CTCATGTTTGGTTATGGAGTTCTGTCCTGGAGGTGACTTGCATACCCTTCGACAAAGACA 995
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 CTCATGTTTAGTTATGGAGTTCTGTCCTGGAGGTGACTTGCATACCCTTCGACAAAGACA 1002
Query 996 GCCCGGGAAGCGATTTTCAGAACAAGCAGCAAAGTTTTATGTAGCGGAAGTACTTCTTGC 1055
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GCCCGGGAAGCGATTCTCAGAACAAGCAGCAAAGTTTTATGTAGCGGAAGTACTTCTTGC 1062
Query 1056 AATGGAATATCTTCATATGCTTGGCATCATATACCGCGATCTAAAGCCAGAGAATGTTCT 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 AATGGAATATCTTCATATGCTTGGCATCATATACCGCGATCTAAAGCCAGAGAATGTTCT 1122
Query 1116 TGTTAGAGATGATGGACATGTGATGCTTTCTGACTTCGACCTCTCCTTGAGATGTACTGT 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 TGTTAGAGATGATGGACATGTGATGCTTTCTGACTTCGACCTCTCCTTGAGATGTACTGT 1182
Query 1176 TAGCCCCACAGTGGTCAGATCAACTGTTCTTGCGTCTGAAGGGCAAAAGAACTCGGGTTA 1235
|||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1183 TAGCCCCACAGTTGTCAGATCAACTGTTCTTGCGTCTGAAGGTCAAAGGAACTCGGGTTA 1242
Query 1236 TTGTGCGCAACCTGCTTGCATCCAACAGCCATCTTGCATTTCTGCTCCTACAACATGCTT 1295
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1243 TTGTGCGCAACCTGCTTGCATCCAACAGCCATCTTGCATTTCTGCTCCTACAACTTGCTT 1302
Query 1296 TTCTCCACGTTATTTCTCAAGTAAATCCAAGAAAGACAAGAAAATGAAAAACGAAACTGG 1355
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TTCTCCACGTTTTTTCTCAAGTAAATCCAAGAAAGACAAGAAAATGAAAAACGAAACTGG 1362
Query 1356 AAACCAGGTAAGTCCATTGCCCGAGCTCGTTGCTGAGCCCACAAGTGCTCGCTCAATGTC 1415
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1363 AAACCAGGTAAGTCCGTTGCCCGAGCTCATTGCTGAGCCCACAAGTGCTCGCTCAATGTC 1422
Query 1416 ATTTGTTGGCACACATGAGTATTTAGCTCCTGAGATCATCAAAGGTGAAGGGCATGGGAG 1475
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 ATTTGTGGGCACACATGAGTATTTAGCTCCTGAGATCATCAAAGGTGAAGGGCATGGGAG 1482
Query 1476 TGCGGTTGATTGGTGGACTTTTGGGATCTTTTTGTATGAGCTATTGTTTGGTAAAACCCC 1535
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1483 TGCGGTTGATTGGTGGACTTTCGGGATCTTTCTGTATGAGCTATTGTTTGGTAAAACCCC 1542
Query 1536 GTTTAAAGGGTCAGGAAACCGAGCAACACTCTTCAACGTTGTGGGTCAGCCTCTGCGTTT 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 GTTTAAAGGGTCAGGAAACCGAGCAACACTCTTCAACGTTGTGGGTCAGCCTCTGCGTTT 1602
Query 1596 CCCAGAATCTCCAGTTGTCAGTTTTGCTGCTAGGGATTTGATTAGGAGTCTGCTTGTGAA 1655
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 CCCTGAATCTCCAGTTGTCAGTTTTGCTGCTAGGGATTTGATTAGGAGTCTGCTTGTGAA 1662
Query 1656 AGAGCCTCAGCATAGATTAGCGTATAAGCGTGGTGCAACTGAGATGAAGCAACATCCTTT 1715
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1663 GGAGCCTCAGCATAGATTAGCGTATAAGCGTGGTGCAACCGAGATGAAGCAACATCCTTT 1722
Query 1716 CTTTGAAGGAGTGAATTGGGCATTGGTTCGATGCGCTAGCCCACCAGAGATACCAAAACC 1775
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1723 CTTCGAAGGAGTAAATTGGGCATTGGTTCGATGCGCTAGCCCACCAGAGATACCGAAACC 1782
Query 1776 GGTTGATTAT-GAGAGTGCGCCTGCTACTCCAGCAGCAGCCACATCTACTAGTGTCAAGT 1834
||||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1783 GGTTGAT-ATCGAAAGTGCACCTGCTACTCCAGCAGCAGCCACATCTACCAGTGTCAAGT 1841
Query 1835 CTGACCAGAGTAATTATCTGGAGTTCGATTTCTTTTGACATATTTCAGCAAGAAAACTGC 1894
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||
Sbjct 1842 CTGACCAGAGTAATTATCTGGAGTTTGATTTCTTTTGACATCTTTCAGCAAGAAATCTGC 1901
Query 1895 CATTAGATTTATCAATTTGTTCTTGGCGATCTGCAAATACGTTTAGTATTTTGAAAATGT 1954
|| |||||| ||||| |||||||| || |||||||||||||||||||||||||||| |||
Sbjct 1902 CAATAGATT-ATCAAATTGTTCTTTGCAATCTGCAAATACGTTTAGTATTTTGAAA-TGT 1959
Query 1955 GAT-AACTCTTTTTAATTCTTTGTCAATGCCATTCTTG 1991
| | |||||||||||| |||||||||| ||||||||||
Sbjct 1960 G-TGAACTCTTTTTAAATCTTTGTCAACGCCATTCTTG 1996
> Ahg495673 jgi|Araly1|495673|fgenesh2_kg.8__1489__AT5G55910.1
Length=2055
Score = 1279 bits (692), Expect = 0.0
Identities = 1228/1481 (83%), Gaps = 60/1481 (4%)
Strand=Plus/Plus
Query 431 ATTCCAGTCAAAGTGTCTCAGTAAACACTTTGGCAGATCAAGTATCTTCAACTTTGTCTT 490
|||||||||||||| | ||| | |||||||| ||||||||||||||||| | ||||||||
Sbjct 386 ATTCCAGTCAAAGTATGTCAATCAACACTTTAGCAGATCAAGTATCTTCGAGTTTGTCTT 445
Query 491 TTG-C--TCCAAGCAGCGACAGTAAAACTGGAGGTGA-AGTTAA-ATTTAATGA-AAAGT 544
| | | |||||| || || ||||||| ||| | || ||| | | || || |||
Sbjct 446 TCGCCGATCCAAGTAGTGATGGTAAAAC---CGGTAATAG-TAAGA-TCAACGAGCAAG- 499
Query 545 CTGATCAGAGCGGGAAGAGTAACACATGTAGACCAAGCACAAGCAGTGATATCAGTGATG 604
| | |||| || ||||||| ||| |||||||| ||||||||||||||||| || ||||
Sbjct 500 --G-TGAGAGTGGAAAGAGTAGCACTTGTAGACCGAGCACAAGCAGTGATATAAGCGATG 556
Query 605 AGAGCACATGTAGCAGCTTTAGT-G--GTAACAACAAGCCTCACAAGGCGAATGACGTGA 661
||||||| ||||||||||||||| | ||| |||||| ||||||||||| ||||| ||||
Sbjct 557 AGAGCACTTGTAGCAGCTTTAGTAGCAGTATCAACAAACCTCACAAGGCTAATGATGTGA 616
Query 662 GATGGGAAGCAATTCAAGCTGTCCGAACGAAACATGG-CGTATTGGGGTTGAACCATTTT 720
|||||||||| ||||||||||| ||||||||||||| || ||||| ||||| ||||||
Sbjct 617 GATGGGAAGCCATTCAAGCTGTTAGAACGAAACATGGTGGT-TTGGGTTTGAATCATTTT 675
Query 721 AGGCTCTTGAAGAGGTTAGGGTGTGGGGATATCGGAACTGTCCACCTTGCTGAGTTGCAC 780
|||||||||||||||||||| ||||| ||||| |||||||| || ||||||||||| |
Sbjct 676 AGGCTCTTGAAGAGGTTAGGATGTGGAGATATTGGAACTGTTCATCTTGCTGAGTTAAAT 735
Query 781 GGAACAAGGTGtttttttGCAATGAAGGTTATGGACAAAGGGGCTTTGGCTAGCCGTAAA 840
|||||| |||||| |||||| |||||||||||||| ||| |||||||||||||| |||
Sbjct 736 GGAACACGGTGTTATTTTGCGATGAAGGTTATGGATAAAACCGCTTTGGCTAGCCGGAAA 795
Query 841 AAGCTTCTTAGAGCTCAGACCGAGAGGGAGATATTGCAGTGTCTTGACCACCCTTTTCTC 900
||||||||||| ||||| || || || |||||||||||||||||||| ||||| ||||||
Sbjct 796 AAGCTTCTTAGGGCTCAAACTGAAAGAGAGATATTGCAGTGTCTTGATCACCCGTTTCTC 855
Query 901 CCAACTTTGTATAGTCACTTCGAGACTGAGAAGTTCTCATGTTTGGTTATGGAGTTCTGT 960
|| || ||||||||||| |||||||||||||||||||| |||||||| |||||||| |||
Sbjct 856 CCGACATTGTATAGTCATTTCGAGACTGAGAAGTTCTCTTGTTTGGTGATGGAGTTTTGT 915
Query 961 CCTGGAGGTGACTTGCATACCCTTCGACAAAGACAGCCCGGGAAGCGATTTTCAGAACAA 1020
||||| ||||| |||||||| || | || ||||| |||||||| || || | || |||
Sbjct 916 CCTGGTGGTGATTTGCATACACTAAGGCAGAGACAACCCGGGAAACGCTTCACCGAGCAA 975
Query 1021 GCAGCAAAGTTTTATGTAGCGGAAGTACTTCTTGCAATGGAATATCTTCATATGCTTGGC 1080
||||| |||||||||||||| ||||| |||||||| ||||||||||| || ||||||||
Sbjct 976 GCAGCTAAGTTTTATGTAGCAGAAGTGCTTCTTGCGATGGAATATCTACACATGCTTGGG 1035
Query 1081 ATCATATACCGCGATCT-AAAGCCAGAGAATGTTCTTGTTAGAGATGATGGACATGTGAT 1139
||||| ||||| ||| | ||| || |||||||||||||| |||||||||||||| |||||
Sbjct 1036 ATCATTTACCGTGATTTGAAA-CCCGAGAATGTTCTTGTGAGAGATGATGGACACGTGAT 1094
Query 1140 GCTTTCTGACTTCGACCTCTCCTTGAGATGTACTGTTAGCCCCAC-AGTGGTCAGATCAA 1198
|||||| || || || |||||| |||||||||| || |||| | | | | |||||||||
Sbjct 1095 GCTTTCGGATTTTGATCTCTCCCTGAGATGTACCGTGAGCCTCTCTA-TAGTCAGATCAG 1153
Query 1199 CTGTTCTTGCG-TCTGAAGGGC----AAAAGAACTCGGGTTATTG-T-GC-GCAACCTGC 1250
| | | | | |||| ||||| |||||| |||| || ||| | || ||||||||
Sbjct 1154 CCAATGTCG-GATCTG-AGGGCTTGTCAAAGAATTCGGTTTCTTGCTCGCAACAACCTGC 1211
Query 1251 TTGCATCCAACAGCCATCTTGCATTTC--T-GCTCCTACAACATGCTTTTCTCCACG-TT 1306
|||||||| || ||||||||||| || | ||||| ||| | ||||| ||||| || ||
Sbjct 1212 CTGCATCCAGCAACCATCTTGCATCTCAATGGCTCCAACATCTTGCTTCTCTCCTCGATT 1271
Query 1307 ATTTCTCA-AGTAAATCCAAGAAAGACAAGAAAATGAAAAACGA-AACTGGAA--ACCAG 1362
|||||| | ||||||||||||||||||||| ||||| ||| ||| |||| ||||
Sbjct 1272 -CTTCTCATCG-AAATCCAAGAAAGACAAGAAACCGAAAACCGAGAACGGGAACCACCAA 1329
Query 1363 GTAAGTCCATTGCCCGAGCTCGTTGCTGAGCCCACAAGTGCTCGCTCAATGTCATTTGTT 1422
|||| ||| || || || |||||||| ||||||||| | || || || ||||| ||||||
Sbjct 1330 GTAACTCCGTTACCAGAACTCGTTGCAGAGCCCACAGGCGCCCGTTCGATGTCTTTTGTT 1389
Query 1423 GGCACACATGAGTATTTAGCTCCTGAGATCATCAAAGGTGAAGGGCATGGGAGTGCGGTT 1482
|||||||| ||||| |||||||| ||||| |||||||||||||| ||||| || ||||||
Sbjct 1390 GGCACACACGAGTACTTAGCTCCAGAGATTATCAAAGGTGAAGGACATGGAAGCGCGGTT 1449
Query 1483 GATTGGTGGACTTTTGGGATCTTT-TTGTATGAGCTATTGTTTGGTAAAACCCCGTTTAA 1541
|||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||||
Sbjct 1450 GATTGGTGGACTTTTGGGATCTTTCTT-TATGAATTATTGTTTGGTAAAACACCGTTTAA 1508
Query 1542 AGGGTCAGGAAACCGAGCAACACTCTTCAACGTTGTGGGTCAGCCTCTGCGTTTCCCAGA 1601
|||||| ||||| ||||| || |||||||| || || |||||||||||| | ||||| ||
Sbjct 1509 AGGGTCTGGAAATCGAGCTACGCTCTTCAATGTGGTTGGTCAGCCTCTGAGATTCCCGGA 1568
Query 1602 ATCTCCAGTTGTCAGTTTTGCTGCTAGGGATTTGATTAGGAGTCTGCTTGTGAAAGAGCC 1661
|||||||||||| || ||||| |||||||||||||| |||||| |||||||||| |||||
Sbjct 1569 ATCTCCAGTTGTTAGCTTTGCAGCTAGGGATTTGATAAGGAGTTTGCTTGTGAAGGAGCC 1628
Query 1662 TCAGCATAGATTAGCGTATAAGCGTGGTGCAACTGAGATGAAGCAACATCCTTTCTTTGA 1721
|| ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1629 ACAACATAGATTAGCTTATAAGCGTGGAGCAACAGAGATAAAGCAACATCCTTTCTTTGA 1688
Query 1722 AGGAGTGAATTGGGCAT-TGGTTCGATGCGCTAGCCCACCAGAGATACCAAAACCGGTTG 1780
||||||||||||||| | |||||||||| || |||||||| ||||| || ||||||||||
Sbjct 1689 AGGAGTGAATTGGGC-TCTGGTTCGATGTGCCAGCCCACCGGAGATTCCTAAACCGGTTG 1747
Query 1781 AT-TATGAGA--GTGCG--CCTGCTACTCC-A-GCAG-CAGCCACATCTACTAGTGTCA- 1831
|| | ||| | || ||| || || | | || | | ||| ||||| | ||||| |
Sbjct 1748 ATCT-TGA-ACCGTTAAATCCTACTCCTGCTATGCCGTCTGCCGCATCTTCGAGTGTGAG 1805
Query 1832 AGTCTGACCAGAGTAATTATCTGGAGTTCGATTTCTTTTGA 1872
| ||||| |||||||||||||| |||||||||||||| |||
Sbjct 1806 A-TCTGATCAGAGTAATTATCTTGAGTTCGATTTCTTCTGA 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75304414365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5