BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26620.1
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492146 jgi|Araly1|492146|fgenesh2_kg.7__1579__AT4G26620.1 2370 0.0
Ahg495672 jgi|Araly1|495672|fgenesh2_kg.8__1488__AT5G55900.1 715 0.0
> Ahg492146 jgi|Araly1|492146|fgenesh2_kg.7__1579__AT4G26620.1
Length=1500
Score = 2370 bits (1283), Expect = 0.0
Identities = 1424/1492 (95%), Gaps = 10/1492 (1%)
Strand=Plus/Plus
Query 24 CTTCTTCGTCTCCGTAGTTTCAGTTTCGATCTGTAAAGTTTCAAACTTGTGGTCGAATTT 83
||| ||| ||||||||||||||||||||||||||||||| || ||||| |||||| ||||
Sbjct 1 CTTGTTCTTCTCCGTAGTTTCAGTTTCGATCTGTAAAGTGTCCAACTTCTGGTCGGATTT 60
Query 84 TTAAATGGGAAGTGGAAGAGATAGAGACGACCCTTTATCCTTCACCAGCAATCCATCTAC 143
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 GTAAATGGGAAGTGGCAGAGATAGAGACGACCCTTTATCCTTCACCAGCAATCCATCTTC 120
Query 144 GGCGTCGTCTCCAGTCACTGTATCTGACTATCTCGACAACTTTCTCGGCGAACCCACTTC 203
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GGCGTCGTCTCCGGTCACTGTATCTGACTATCTCGACACCTTTCTCGGCGAACCCACTTC 180
Query 204 TCGCTCCGGTAGTTTTCAAAGCGAGAGCTTACTCGGTGGAGGCGGTGGAGAAAGCATCAA 263
||||||||| |||||||||||||||||||| ||||||||| ||| ||||| ||
Sbjct 181 TCGCTCCGGGAGTTTTCAAAGCGAGAGCTTGCTCGGTGGA-------GAG--AGCATTAA 231
Query 264 CGACGCTGATTTTGGATTCGCTCGTCCTGATTTCCGATCGGAACAACTAGCTGGAACCGT 323
|||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 232 CGACGCTGATTTCGGATTCGCTCGTCCTGATTTCCGATCGGAGCAACTCGCTGGGACCGT 291
Query 324 ACAGTTTTACGAGAGGCATGTCTTCTTGTGCTACAAAAAGCCATCTGTTTGGCCCGCAAG 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 ACAGTTTTACGAGAGGCATGTCTTCTTGTGCTACAAAAAGCCATCTGTTTGGCCCGCAAG 351
Query 384 GATCGAGGCTGCTGAGTTCGATCGATTGCCTAGGCTACTCTCTGCTGCTGTATCGGCCAG 443
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 352 GATCGAGGCTGCTGAGTTCGATCGATTGCCTAGGCTACTCTCTGCGGCTGTATCGGCCAG 411
Query 444 AAAGGGTAGCATGAAGAAGGAGACTCGACTCACAATATGTGAGGGGCATGATGGAACAGA 503
||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 412 GAAGAGTAGCATGAAGAAGGAGACTCGACTCACAATATGTGAGGGCCATGATGGGACAGA 471
Query 504 GACATCCAATGGTGATGTACTTATTTTTCCTGATATGATCAGATACAGGAGATTGACTCA 563
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 472 GACATCCAATGGTGATGTACTTATTTTTCCTGATATGATCAGATACAGAAGATTGACTCA 531
Query 564 CTTTGATGTGGAGACCTTTGTGGAAGAGGTGCTTGTGAAGGATGGTGAATGGCTGCCTGG 623
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TTTTGATGTGGACACATTTGTGGAAGAGGTGCTTGTGAAGGATGGTGAATGGCTGCCTGG 591
Query 624 AAATCCTGAATTGCTGAAAGGCTCATATGTCTTTGTATGTTCCCATGGATCCCGAGACCG 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AAATCCTGAATTGCTGAAAGGCTCATATGTCTTTGTATGTTCCCATGGATCCCGAGACCG 651
Query 684 GCGATGTGGGGTTTGTGGGCCGTCGCTAGTTAGTAGATTCAGAGAAGAACTTGAGTTCCA 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GCGATGTGGGGTTTGTGGGCCGTCGCTAGTTAGTAGATTCAGAGAAGAACTTGAGTTCCA 711
Query 744 TGGTCTTCAAGGTAAAGTGTCAATTAGCCCATGTTCTCACATAGGTGGTCACAAATACGC 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TGGTCTTCAAGGTAAAGTGTCAATTAGCCCATGTTCTCACATAGGTGGTCACAAATACGC 771
Query 804 TGGGAATGTTATCATCTACCGATCAAACATCAACAGGGAAGTCACAGGACACTGGTATGG 863
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TGGGAATGTTATCATCTACAGATCAAACATCAACAGGGAAGTCACAGGACACTGGTATGG 831
Query 864 GTATGTGACCCCAGAAGATGTACCTATTCTTTTGGAGCAGCACATCAACAAAGGCGAGAT 923
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 832 GTATGTGACCCCAGAAGATGTACCTATTCTCTTGGAGCAGCACATCAACAAAGGCGAGAT 891
Query 924 TGTAGACCGGCTATGGAGGGGTGAAATGGGTCTATCAGAAGAAGATCAGAAGAAAACTCA 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TGTAGACCGGCTATGGAGGGGTGAAATGGGTCTATCAGAAGAAGATCAGAAGAAAACTCA 951
Query 984 AGAAGGGCGATTTCAGCTAAATGGTACAGTCCATTCCGTAAAGATCAATGGGAAAGTGAG 1043
||||||||| ||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct 952 AGAAGGGCGGTTTCAGCTAAATGGTGCAGTCCATACGGTAAAGATCAATGGGAAAGTGAG 1011
Query 1044 TCAAGAATCATCGGTTCACAACGCCGATGTTTCCTGTTGCCAGTCACGAGCTGCAGAACC 1103
|||||||||||| || |||| |||||||||||| |||||||| |||||||||||||||||
Sbjct 1012 TCAAGAATCATCAGTCCACAGCGCCGATGTTTCTTGTTGCCAATCACGAGCTGCAGAACC 1071
Query 1104 TAATGGTTGTTGCCAACAAAATGGGAACAGCTCTTCATGTTGTCAAGACGACACTACTCT 1163
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1072 TAATGGTTGTTGCCAACAAAATGGGAACAGCTCTTCATGTTGTCAAGACGACACAACTCT 1131
Query 1164 GATGTTGTCACTGGGAACATCAGAAGATAATCAACTTGAAAGTGAAAACAACACTGAGAA 1223
|||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1132 AATGTTGTCTCTGGAAACATCAGAAGATAATCAACTTGAAAGTGAAAACAACACAGAGAA 1191
Query 1224 GCTGACACCAGGAAGAAAAATTGCAGAAAAGACTTTCTTTAGAATTAATAGTGACAAAGG 1283
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GCTTACACCAGGAAGAAAAATTGCAGAAAAGACTTTCTTTAGAATTAATAGTGACAAAGG 1251
Query 1284 ATCTTCGACACGTAAGGTTTGCGGAATACCAACATGGTTAGAGAGCTGGGAGCGAGAAGA 1343
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1252 ATCTTCAACACGTAAGGTTTGCGGAATACCAACATGGCTAGAGAGCTGGGAGCGAGAAGA 1311
Query 1344 TACTTATGCTGCTCTTGCTGTTGTCTGTGCTGCTGCTTCCGTGGCTGTTGCCTATACTTG 1403
||| |||||||| |||||||| || ||||||||||||||||||| |||||||||||||||
Sbjct 1312 TACATATGCTGCCCTTGCTGTCGTTTGTGCTGCTGCTTCCGTGGTTGTTGCCTATACTTG 1371
Query 1404 CTACAAACAGTTGTAACGAAGAAATTTGTAGCCCTAAGATGATTGTGTATTGTGTTCTTA 1463
||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1372 CTACAAACAGTTGTAGGGAAGAAATTCGTATCCCTAAGATGATTGTGTATTGTGTTCTTA 1431
Query 1464 TAAGACATTGTGATTTTGTTTCTGCTTTCAAACTACATTTTCCTTTCGATTT 1515
|||||||||||||||||||||| ||||||||||||||||| || |||| |||
Sbjct 1432 TAAGACATTGTGATTTTGTTTCAGCTTTCAAACTACATTTCCCCTTCG-TTT 1482
> Ahg495672 jgi|Araly1|495672|fgenesh2_kg.8__1488__AT5G55900.1
Length=1450
Score = 715 bits (387), Expect = 0.0
Identities = 791/978 (81%), Gaps = 59/978 (6%)
Strand=Plus/Plus
Query 21 CTTCTTCTTCGTCTCCGTAGTTTCAGTTTCGATCT-GT--AAAGTTTCAAACTTGTGGTC 77
||||||| || |||| | | ||||||||||||||| | ||||||| ||||| | |||
Sbjct 8 CTTCTTCCTCTTCTCAGAACTTTCAGTTTCGATCTCCTAAAAAGTTT-GAACTTTTCGTC 66
Query 78 GAATTTTTAAATGGGAAGTGGAAGAGATAGAGACGACCCTTTATCCTTCACCAGCAATCC 137
||| | |||||||||| |||||| || ||||||||||||| | || || || || ||
Sbjct 67 GAA---TCAAATGGGAAGCGGAAGATATTTAGACGACCCTTTAACATTTACTAGAAACCC 123
Query 138 ATCTA-CGGCGTCGTCTCCAGTCACTGTATCTGACTATCTCGACAACTTTCTCGGCGAAC 196
| | | | |||| |||||| |||| | || |||| | |||||||||||||
Sbjct 124 A-CCATCCTCGTCTTCTCCAATCAC-----C-GA--ATCT----AGCTTTCTCGGCGAAT 170
Query 197 CCACT-TCTCGCTCCGGTAGTTTTCAAAGCGAGAGCTTACTCGGTGGAGGCGGTGGAGAA 255
| | | |||||||| || || ||| | || ||||||||| | | ||||||| ||| ||
Sbjct 171 CGA-TCTCTCGCTCTGGAAGCTTTGAGAGTGAGAGCTTA--C-GAGGAGGCGATGGTGAT 226
Query 256 AGCATCAACGACGCTGATTTTGGATTCGCTCGTCCTGATTTCCGATCGGAACAACTAGCT 315
||| | | |||||| | |||| ||| | | || || | | |||| |||
Sbjct 227 AGCTTTAGCGACGC--A-----GATT---TCG--C--ACTT--GA---G-A-AACTCGCT 265
Query 316 GGAACCGTACAGTTTTACGAGAGGCATGTCTTCTTGTGCTACAAAAAGCCATCTGTTTGG 375
|| || |||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 266 GGTACTGTACAGTTCTACGAGAGGCATGTCTTCTTGTGCTACAAAAAGCCCTCCGTTTGG 325
Query 376 CCCGCAAGGATCGAGGC-TGCTGAGTTCGATCGATTGCCTAGGCTACTCTCTGCTGCTGT 434
||||| |||||||| || | | ||||| ||||| | || ||||| |||||| | | | |
Sbjct 326 CCCGCGAGGATCGAAGCGT-CGGAGTTTGATCGGCTACCGAGGCTTCTCTCTTCCGTTAT 384
Query 435 ATCGGCCAGAAAGGGTAGCATGAAGAAGGAGACTCGACTCACAATATGTGAGGGGCATGA 494
||||||||| ||| |||| |||| ||| ||||||| |||||||||||||||||| |||||
Sbjct 385 ATCGGCCAGGAAGAGTAGTATGACGAAAGAGACTCTACTCACAATATGTGAGGGACATGA 444
Query 495 TGGAACAGAGACATCCAATGGTGATGTACTTATTTTTCCTGATATGATCAGATACAGGAG 554
||||||||||||||| ||||| ||| | || || ||||| ||||||||||||||||| ||
Sbjct 445 TGGAACAGAGACATCAAATGGGGATTTTCTGATATTTCCAGATATGATCAGATACAGAAG 504
Query 555 ATTGACTCACTTTGATGTGGAGACCTTTGTGGAAGAGGTGCTTGTGAAGGATGGTGAATG 614
||||||| |||||||| || || ||||| |||||||||||||||||||||| ||| ||
Sbjct 505 GCTGACTCATTTTGATGTCGACACATTTGTTGAAGAGGTGCTTGTGAAGGATGTTGAGTG 564
Query 615 GCTGCCTGGAAATCCTGAATTGCTGAAAG-GCT-CATATGTCTTTGTATGTTCCCATGGA 672
| |||||||||||||||||| || ||| | | | |||||||||||||||| |||||
Sbjct 565 GTTGCCTGGAAATCCTGAAT--CTTTAAGTGGTTCGTATGTCTTTGTATGTTGTCATGGT 622
Query 673 TCCCGAGACCGGCGATGTGGGGTTTGTGGGCCGTCGCTAGTTAGTAGATTCAGAGAAGAA 732
||||||||||||||||||||||||||||| || ||||| |||||| ||||||||||||||
Sbjct 623 TCCCGAGACCGGCGATGTGGGGTTTGTGGACCTTCGCTGGTTAGTCGATTCAGAGAAGAA 682
Query 733 CTTGAGTTCCATGGTCTTCAAGGTAAAGTGTCAATTAGCCCATGTTCTCACATAGGTGGT 792
|||| || |||||||| |||| |||| || | ||||| ||||||||||| |||| |
Sbjct 683 ATTGAATTTTGTGGTCTTCGAGGTGAAGTTTCGGTCAGCCCTTGTTCTCACATTGGTGAT 742
Query 793 CACAAATACGCTGG-GAATGTTATCATCTACCGATCAAACATCAAC-AGGGAAGTCACAG 850
||||||||| |||| || |||||||||||| ||| |||||||||| || || |||||||
Sbjct 743 CACAAATACACTGGAGA-TGTTATCATCTATGGATTAAACATCAACCAGAGA-GTCACAG 800
Query 851 GACACTGGTATGGGTATGTGACCCCAGAAGATGTACCTATTCTT-TTGGAGCAGCACATC 909
||||||||||||| | |||||| | ||| |||||| || || || |||||||| |||||
Sbjct 801 GACACTGGTATGGATGTGTGACTCTAGAGGATGTATCTCTT-TTGTTGGAGCAACACATT 859
Query 910 AACAAAGGCGAGATTGTAGACCGGCTATGGAGGGGTGAAATGGGTCTATCAGAAGAAGAT 969
||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 860 AACAAAGGCGAAATTGTAGACCGGCTTTGGAGGGGTGAAATGGGTCTACCAGAAGAAGAT 919
Query 970 CAGAAGAAAACTCAAGAA 987
||||||||||||||||||
Sbjct 920 CAGAAGAAAACTCAAGAA 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60220677345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5