BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26630.1
Length=2805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492144 jgi|Araly1|492144|fgenesh2_kg.7__1577__AT4G26630.1 2802 0.0
Ahg495653 jgi|Araly1|495653|fgenesh2_kg.8__1469__AT5G55660.1 1029 0.0
> Ahg492144 jgi|Araly1|492144|fgenesh2_kg.7__1577__AT4G26630.1
Length=2732
Score = 2802 bits (1517), Expect = 0.0
Identities = 1737/1838 (95%), Gaps = 35/1838 (2%)
Strand=Plus/Plus
Query 964 aagaggagacaaatgatgataaagaagatgaaaaagaagagagCAAGGGTTCTAAAAAGC 1023
||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 922 AAGAGGAGAGAAATGATGACAAAGAAGATGAAAGAGAAGAGAGCAAGGGTTCTAAAAAGC 981
Query 1024 GTGGGAAAGGGACGAGTTCTGGAGGAAAGGTTCGCGAGAAGA-ATAAAACCGAGGAAGTA 1082
|||||||||| | |||||||||||||||||||||||||| || | |||| ||||||||||
Sbjct 982 GTGGGAAAGGCAAGAGTTCTGGAGGAAAGGTTCGCGAGAGGACA-AAAAACGAGGAAGTA 1040
Query 1083 AAAAAGGATGCAGAGCCTAGGACTCCTTTCTCTGATCGCCCTGTGCGTGAGCGGAAATCT 1142
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 AAAAAGGAAGCAGAGCCTAGGACTCCTTTCTCTGATCGCCCTGTGCGTGAGCGGAAATCT 1100
Query 1143 GTTGAGAGGCTTGTTGCATTGATTGATAAAGACTCCTCGAAAGAATTCCGTGTTGAAAAG 1202
||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||||
Sbjct 1101 GTTGAGAGGCTTGTTGCATTGATTGATAAAGACTCTTCGAAAGAATTTCATATTGAAAAG 1160
Query 1203 GGGCGAGGTGCATATCTCAAAGATATTCCCAATGTTGCTAACAAGGTAATGAGGAAGAGG 1262
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct 1161 GGGCGAGGTGCATATCTCAAAGACATTCCCAATGTTGCTAACAAGGTAACAAGGAAGAAG 1220
Query 1263 TCTGATGAAACTTTGAAGCTGCTTCACCCAATTCTATTTGGTGGGAGGAGAGGGAAGGCT 1322
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1221 CCTGATGAAACTTTGAAGCTGCTGCACATGATTCTATTTGGTGGGAGGAGAGGGAAGGCT 1280
Query 1323 GCTCAGATCAAGACAAACATATTGGGCTTCTCTGGTTTCGTTTGGCATGGAGATGagaag 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 GCTCAGATCAAGACAAACATATTGGGCTTCTCTGGTTTCGTTTGGCATGGAGATGAGAAG 1340
Query 1383 aaagcaaaagaaaaagtaaaagaaaagcttgagaaatgcaccaaagagaaaCTGTGGGAG 1442
|| |||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1341 AAGGCAAAAGAGAAAGTAAAAGAAAAGCTTGAAAAATGCATCAAAGAGAAACTGTGGGAG 1400
Query 1443 TTTTGTGATGTGTTGGACATACACATTACCAAGGCTACAACAAAGAAGGAAGATATTATT 1502
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1401 TTTTGTGATGTGTTGGACGTACATATTACCAAGGCTACAACAAAGAAGGAAGATATTATT 1460
Query 1503 ACAAAACTGTTTGAGTTTTTGGAGAAACCTCATGTGACAGGTGATGTGACCGGTGACACT 1562
||||||||| |||||||||||||||||||||||||||| | | ||||||||
Sbjct 1461 ACAAAACTGATTGAGTTTTTGGAGAAACCTCATGTGAC-----A----A---GTGACACT 1508
Query 1563 ACAGTTTCTGAGAAAGAGAAGTCAAGTAAGGGAGCAAAACGCAAGAGAACTCCCAAGAAA 1622
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1509 GCAGTTTCTGAGAAAGAGAAGTCAAGTAAGGGAGCAAAACGCAAGAGAACTCCCAAGCAA 1568
Query 1623 ACTTCACCTACAGCTGGGAGTTCATCCTCCAAACGATCAGCAAAGAGCCaaaa-aaaGTC 1681
| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1569 AGTTCACCTACAGCTGGGAGTTCATCCTCCAAACGATCAGCAAAGAG-CAAAAGAAAGTC 1627
Query 1682 TGAAGAAGCAACAAAAGTTGTCAAAAAGAGTTTAGCTCATTCTGATGATGAATCTgaaga 1741
|||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1628 TGAAGAAGCAGCAAAAGGTGTCAAAAAGAGTTTAGCTCATTCTGATGATGAGTCTGAAG- 1686
Query 1742 agagaaagaagaagaagaaaaacaagaggaggagaaggcagaagagaaagaagagaaaaa 1801
|| || | |||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1687 AG-GAGA-AAGAAGAAGAAAAACAAGAGGAGGAGAAGGCAGAAGAGGAAGAAGAGAATAA 1744
Query 1802 agaggaggagaatgaaaaTGGCATTCCTGATAAATCTGAGGATGAGGCGCCTCAGCCTTC 1861
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1745 AGACGAGGAGAATGAAAATGGCATTCCTGATAAATCTGAGGATGAGGCACCTCAGCCTTC 1804
Query 1862 TGAAAGCGAGGAGAAAGATGAATCTGAGGAGCATTCTGAAGAAGAAACTACAAAGAAGAA 1921
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1805 TGAAAGCGAGGAGAAAGATGAATCTGAGGAGCATTCTGAAGAAGAAACTGCAAAGAAGAA 1864
Query 1922 ACGTGGTTCTAGATTGTCAGCTGGGAAGAAAGAATCAGCAGGGAGAGCCAGAAACAAGAA 1981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1865 ACGTGGTTCTAGATTGTCAGCTGGGAAGAAAGAATCAGCAGGGAGAGCCAGAAACAAGAA 1924
Query 1982 AGCAGTGGTCGCTGCAAAATCCAGTCCACCAGAGAAGATTACACAGAAGCGGTCATCAGC 2041
||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1925 AGCAGCAGTCGCTGCAAAATCCAGTCCACCAGAGAAGGTTACACAGAAGCGATCATCAGC 1984
Query 2042 CAAACGAAAGAAGACTGATGATGACAGTGATACAAGTCCAAAGGCGTCCTCTAAGAGGAA 2101
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1985 CAAACGAAAGAAGACTGATGATGACAGTGATACAAGTCCAAAAGCCTCCTCTAAGAGGAA 2044
Query 2102 GAAGTCTGAAAACCCTATCAAGGCCTCCCCGGCTCCTTCAAAGTCTGCATCAAAAGAGAA 2161
|||| ||||||| | || |||||||||||||||||||||||| |||||||||||||||||
Sbjct 2045 GAAGACTGAAAAACTTACCAAGGCCTCCCCGGCTCCTTCAAAATCTGCATCAAAAGAGAA 2104
Query 2162 GCCAGTAAAAAGGGCTGGAAAAGGGAAAGACAAGCCGAGTGATAAAGTGCTGAAAAATGC 2221
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2105 GCCAGTAAAAAGGGCTGGAAAAGGGAAAGACACGCCGAGTGATAAAGTGCTGAAAAATGC 2164
Query 2222 AATCGTTGAGATCTTGAAAAGAGTGGACTTTAGTACGGCTACGTTCACGGACATCCTTAA 2281
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2165 TATCGTTGAGATCTTGAAAAGAGTGGACTTTAGCACGGCTACGTTCACGGACATCCTTAA 2224
Query 2282 AGAACTTGCTAAGGAGTTCACAGAAGATCTCACTCCAAGAAAGTCATCTATAAAGATGAT 2341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2225 AGAACTTGCTAAGGAGTTCACAGAAGATCTCACTCCAAGAAAGTCATCTATAAAGATGAT 2284
Query 2342 AATCCAAGAGGAGCTCACCAAATTAGCAGATgaggaggaggaggagga--a-aagaaaga 2398
|||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 2285 AATCCAAGAGGAGCTCACCAAATTAGCAGAAGAGGAGGAGGAGGAGGAGGAGAAGAAAGA 2344
Query 2399 agaggattcagagaaggaggaagcaggaggGTCTGGTGGTGGTGAGGAGGTGAAAGCCTA 2458
||||||| |||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 2345 AGAGGATGCAGAGAAGGAGGAAGCAGGAGG-T--GGTG------AGGAGGTGAAAGCCTG 2395
Query 2459 AACTCCTTTCTGATCACATCGCACATATTGAGTCTCTCTGTCAGA--TAC-TGTTGCCTA 2515
||||||||||||||||||| ||||||||||||||||||| ||| | | | |||||||||
Sbjct 2396 AACTCCTTTCTGATCACATAGCACATATTGAGTCTCTCTCTCACAGGT-CGTGTTGCCTA 2454
Query 2516 ATGCCTAGTAGTCATCTGGCAAATGTGTAAGTTAAATCTGTGGATGTAATATTTTGTTGT 2575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2455 ATGCCTAGTAGTCATCTGGCAAATGTGTAAGTTAAATCTGTGGATGTAATATTTTGTTGT 2514
Query 2576 TGGAGTCTGAACTGCGTAAAGCAGCTTTACTTTTGGTAGAGACAAGAGGAAGAAGCTGCA 2635
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2515 TGGAGTCTGAACTGCGCAAAGCAGCTTTACTTTTGGTAGAGACAAGAGGAAGAAGCTGCA 2574
Query 2636 TAGCCAAAGGATAGGTTGCTTGTATGTCTATAGCATTTAACATAAAAGCCTCCTTGGATT 2695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2575 TAGCCAAAGGATAGGTTGCTTGTATGTCTATAGCATTTAACATAAAAGCCTCCTTGGATT 2634
Query 2696 GTCTTTGATTTGTGAGGCTCCCTTTTCGAGACATTGTCAAGGTTTCTTTTGTTTATGTCT 2755
||||||||||||||||||||||||||||| ||||| ||||| ||||| | ||||||||||
Sbjct 2635 GTCTTTGATTTGTGAGGCTCCCTTTTCGATACATTCTCAAGCTTTCTGTAGTTTATGTCT 2694
Query 2756 TTTGGTTTGAAGGAGGCCAATGGTAATAAATGAATAAT 2793
||||||||||||||||||||||||||||||||||||||
Sbjct 2695 TTTGGTTTGAAGGAGGCCAATGGTAATAAATGAATAAT 2732
Score = 1173 bits (635), Expect = 0.0
Identities = 891/1003 (89%), Gaps = 64/1003 (6%)
Strand=Plus/Plus
Query 1 TTCTCTCTCCTaaaaaacgctatcaaaaagaaaaacaaaagctatttgttctgttttgta 60
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1 TTCTCTCTCATAAAAAACGCTATCGAAAAGAAAAACAAAAGCTATTTGTTCTGTTTCGT- 59
Query 61 agaaaaaaagtagttagaggagaaaaaaaaCTCAGT---GCCGAGTCTTGTGATACTC-- 115
| || || | |||||||||||||| |||||||||||||||||||
Sbjct 60 --------A--AG---GA--A-AAAAAAAACTCAGTGCCGCCGAGTCTTGTGATACTCTG 103
Query 116 ---TGAG--CCACAAGAAGTGTTTTTGGTGGAAGGATCTACTGAACTGGTTTGTAATATG 170
|||| ||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 104 AGGTGAGATTCACAAGAAGTGTTTTTGGTGGAAGGATCTACTG---T--TTTTTAATATG 158
Query 171 GGGGAAGATACAAAGGCAACCATTGAGCCAACCGCAAACAAGACTACTTCTCTTGAAAAG 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 GGGGAAGATACAAAGGCAACCATTGAGCCAACCGCAAACAAGACTACTTCTCTTGAAAAG 218
Query 231 CCATCAGAGGCTATGGCTGG-----A--A--AGGAGAATGCTGGGGGTAAGGAAACACAA 281
|||||||||||||||||||| | | |||||||||||| ||| ||||||||||||
Sbjct 219 CCATCAGAGGCTATGGCTGGAAAAAAGGAGGAGGAGAATGCTGAGGGAAAGGAAACACAA 278
Query 282 GAACTGGCGAAAGATGAGGATATGGCTGAGCCAGACAATATGGAGATAGATGCTCAGATT 341
||||| | |||||||||||||| ||||| ||||| || ||||||||||||||| ||||
Sbjct 279 GAACTTACAAAAGATGAGGATATTGCTGAACCAGAGAAAATGGAGATAGATGCTGAGATA 338
Query 342 AAGAAAGATGATGAAAAA-GCTGAGACGGAAGATAAAGAGTCAGAGGTTAAGAAAAATGA 400
|||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| ||
Sbjct 339 AAGAAAGATGATGAAAAATG-TGAGACCGAAGATAAAGAGTCAGAGGTTAAGAAAAAGGA 397
Query 401 AGACAATGCTGAGACTCAAAAAATGGAAGAGAAGGTTGAGGTCACCAAAGATGAGGGACA 460
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 398 AGACAATGCTGAGACTCAAAAAATTGAAGATAAGGTTGAGGTCACCAAAGATGAGGGACA 457
Query 461 AGCAGAGGCTACCAACATGGATGAAGATGCCGATGGAAAGAAAGAGCAAACTGATGATGG 520
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 458 AGCAGAGGCTACCAACATGGATGAAGATGCAGATGGAAAGAAAGAGCAAACTGGTGATGG 517
Query 521 TGTTTCAGTGGAAGATACTGTAATGAAGGAAAACGTGGAATCTAAAGACAATAACTATGC 580
| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 518 TATTTCAGTGGAAGATACCGTAATGAAGGAAAACGTGGAATCTAAAGACAATAACAATGC 577
Query 581 CAAAGATGATGAAAAAGAGACCAAAGAGACAGATATTACTGAGGCAGACCACAAAAAAGC 640
||||||||||||||| | | || |||||| ||| |||||| |||||||||||||| ||
Sbjct 578 CAAAGATGATGAAAA-G---C-AA-GAGACAAATAGTACTGAAGCAGACCACAAAAATGC 631
Query 641 TGGGAAGGAGGACATACAACATGAAGCTGACAAAGCAAATGGAACAAAAGATGGCAATAC 700
|||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 632 TGGGAAGGAGGACATAGAACATGAAGGTGAAAAAGCAAATGGAACAAAAGATGGCAATAC 691
Query 701 AGGAGACATCAAAGAGGAAGGGACACTGGTAGATGAAGACAAAGGGACAGATATGGATGA 760
||||||||||| |||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 692 AGGAGACATCAGAGAGGAAGGGACACTGGTAGATAAAGACAAAGGGACAGACAGGGATGA 751
Query 761 AAAAGTGGAGAATGGGGATgaaaat-aaacaagtggagaatgttgaagga--aaagaa-a 816
|||||||||||||| |||||| ||| ||| |||||||||||||||||| | |||| | |
Sbjct 752 AAAAGTGGAGAATGTGGATGACAATGAAA-AAGTGGAGAATGTTGAAGAAGGAAAGGAGA 810
Query 817 aggaagataaggaagaaaataaaacaaaggaagTTGAGGCGGCAAAGGCTGAGGTGGATG 876
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 811 AGGAAGATACGGAAGAAAATAAAACAAAGGAAGTTGAGGGGGCAAAGGCTGAGGTGGATG 870
Query 877 AGTCAAAGGTAGAAGATGAAAAAGAAGGGAGTGAGGATGAGAACGACAATGAAAAAGTGg 936
|| ||||||||||||||||||||||||||||||| ||| ||||| |||||||| | | |
Sbjct 871 AGGCAAAGGTAGAAGATGAAAAAGAAGGGAGTGATGATAAGAACAACAATGAAGA-G-G- 927
Query 937 agagcaaa-gatg-caaaggaagatgagaa-agaggaga-caa 975
|||| ||| |||| ||||| ||||||| || ||| |||| |||
Sbjct 928 AGAG-AAATGATGACAAAG-AAGATGA-AAGAGAAGAGAGCAA 967
> Ahg495653 jgi|Araly1|495653|fgenesh2_kg.8__1469__AT5G55660.1
Length=2798
Score = 1029 bits (557), Expect = 0.0
Identities = 1247/1566 (80%), Gaps = 103/1566 (7%)
Strand=Plus/Plus
Query 891 GATGAAAAAGAAGGGAGTGAGGATGAGAACGACA-ATGAAAAAGTGgagagcaaagatgc 949
||||| || |||| || ||||| ||||| || | |||| |||| ||||| | ||||
Sbjct 947 GATGAGAATGAAGAGAAAGAGGAAGAGAAGGA-AGATGAGAAAGAAGAGAGTATGGATG- 1004
Query 950 a-aaggaagatgagaaagaggaga-caaatgatgataaagaagatgaaaaagaagagagC 1007
| ||||||||||| ||||| |||| | ||||||||||| ||||| |||||||||||| |
Sbjct 1005 ATAAGGAAGATGAAAAAGAAGAGAGC-AATGATGATAAGGAAGACAAAAAAGAAGAGATC 1063
Query 1008 AAG-GGTTCTAAAAAGCGTGGGAAAGGGACGAGTTCTGGAGGAAAGGTTCGCGAGAAGAA 1066
||| | ||||| ||||| |||||| ||| || || || | |||| ||||| |||| |
Sbjct 1064 AAGAAG-TCTAACAAGCGAGGGAAAAGGA--AG-ACT-GA-G-AAGGCTCGCGGGAAG-A 1115
Query 1067 T-AAAACCGAGGAAGTAAAA-AAGGATGCAGAGCCTAGGACTCCTTTCTCTGATCGCCCT 1124
| || | ||||||| |||| |||||| ||| |||||||||||||||||||||||||||
Sbjct 1116 TGAAGAGTGAGGAAG-AAAAGAAGGATATAGAACCTAGGACTCCTTTCTCTGATCGCCCT 1174
Query 1125 GTGCGTGAGCGGAAATCTGTTGAGAGGCTTGTTGCATTGATTGATAAAGACTCCTCGAAA 1184
|| ||||||||||| |||||||| ||||||||||| || |||||||||| || || |||
Sbjct 1175 GTCCGTGAGCGGAAGTCTGTTGAAAGGCTTGTTGCGGTGGTTGATAAAGATTCTTC-AAA 1233
Query 1185 G-AATTCCGTGTTGAAAAGGGGCGAGGTG-CATATCTCAAAGATATTCCCAATGTTGCTA 1242
| |||||| |||||||||||| ||| | || |||||||||||||||||||||||||
Sbjct 1234 GGAATTCCATGTTGAAAAGGGAAAAGG-GACACCTCTCAAAGATATTCCCAATGTTGCTT 1292
Query 1243 ACAAGGTAATGA-GGAAGAGGTCTGATGAAACTTTGAAGCTGCTT-CACC-CAATTCTAT 1299
||| |||| | | |||||| |||||||||| ||| |||| | || ||| || ||||||
Sbjct 1293 ACAGGGTA-TCAAGGAAGAAGTCTGATGAAGTTTTCAAGCAG-TTACACTTCA-TTCTAT 1349
Query 1300 TTGGTGGGAGGAGAGGGAAGGCTGCTCAGATCAAGACAAACATATTGGGCTTCTCTGGTT 1359
| |||||||||||||| || ||| ||||| ||||| |||||||||| |||| |||||||
Sbjct 1350 TCGGTGGGAGGAGAGGAAAAGCTACTCAGCTCAAGGCAAACATATTACGCTTTTCTGGTT 1409
Query 1360 TCGTTTGGCATGGAGATGagaagaaag-caaaagaaaaagtaaaagaaaagcttgagaaa 1418
| ||||| ||||||||| | |||| ||||| ||||| ||||||||| ||||||||
Sbjct 1410 ACAAATGGCAAGGAGATGAGGA-AAAGGCAAAATTGAAAGTGAAAGAAAAGATTGAGAAA 1468
Query 1419 -tgcaccaaagagaaaCTG-TGGGAGTTTTGTGATGTGTTGGACATA-CACATTACCAAG 1475
| || |||||| ||| || ||| ||||||| ||| | || |||||| || || | |||
Sbjct 1469 AT-CAACAAAGAAAAATTGCTGG-AGTTTTGCGATCTATTTGACATATCAG-TTGCTAAG 1525
Query 1476 GCTACAACAAAGAAGGAAGATATTATTACAAAACTGTTTGAGTTTTTGGAGAAACCTCAT 1535
|||| |||||||||||||||||| | ||||| ||| |||||||||||||||||||||||
Sbjct 1526 ACTACCACAAAGAAGGAAGATATTGTCACAAAGCTGGTTGAGTTTTTGGAGAAACCTCAT 1585
Query 1536 GTGACAGGTGATGTGACCGGTGACACTACAGTTTCTGAGAAAGAGAAGTCAAGTAAGGGA 1595
| ||| |||||| | | | | | ||||||||||| | | |
Sbjct 1586 GCAACAACTGATGT--C-----A-A-T---G------AGAAAGAGAAG----G---G--A 1618
Query 1596 GCAAAACGCAAGAGAACTCCCAAGAAAACTTCACCTACAGCTGGGAGTTCATCCTCCAAA 1655
|| || ||||| |||||||| ||||||| ||||||| ||||||| |||||||| || |||
Sbjct 1619 GCGAAGCGCAAAAGAACTCCTAAGAAAAGTTCACCTGCAGCTGGAAGTTCATCTTCAAAA 1678
Query 1656 CGATCAGCAAAGAGCCaaaaaaaGTCTGAAGAAGCAACAAAAGTTGTCAAAAAGAGTTTA 1715
|||||||||||||||||||||||| | || ||||| |||| | | ||||||||||||
Sbjct 1679 CGATCAGCAAAGAGCCAAAAAAAGACCGAGGAAGCGACAAG-GAC-T-AAAAAGAGTTTA 1735
Query 1716 GCTCATTCTGATGATGAATCTgaagaagagaaagaagaagaagaaaaacaagaggaggag 1775
|||||||||||||||| ||||||||||||||||| || || ||| || ||||| | ||
Sbjct 1736 CCTCATTCTGATGATGAGTCTGAAGAAGAGAAAGAGGACGATGAAGAAGAAGAGAA--AG 1793
Query 1776 aaggcagaagagaaagaagagaaaaaagaggaggagaatgaaaaTGGCATTCCTGATAAA 1835
| | ||| || | | || ||| || |||||||| ||||||||||| || |||||||||
Sbjct 1794 A-G-CAGGAG-GTA-GAGGAGGAA---GAGGAGGAAAATGAAAATGGGATCCCTGATAAA 1846
Query 1836 TCTGAGGATGAGGCGCCTCAGCCTTCTGAAAGCGAGGAGAAAGATGAATCTGAGGAGCAT 1895
|||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |
Sbjct 1847 TCTGAGGACGAGGCGCCTCAGCCTTCTGAAAGTGAGGAGAAAGTTGAATCTGAGGAGGAG 1906
Query 1896 TCTGAAGAAGAAACTACAAAGAAGAAACGTGGTTCTAG-ATTGTCAGCTGGGAAGAAAGA 1954
|| || |||||||||| ||||||||||||||||||||| | ||| |||| ||||||||
Sbjct 1907 TCAGAGGAAGAAACTAAAAAGAAGAAACGTGGTTCTAGGACA-TCATCTGGAAAGAAAGA 1965
Query 1955 ATCAGCAGGGAGAGCCAGAAACAAGAAAGCAGTGGTCGCTGCAAAATCCAGTCCACCAGA 2014
||||||||||| | |||||| ||||||| | | ||| || | ||||||||||||||| |
Sbjct 1966 ATCAGCAGGGAAATCCAGAAGCAAGAAAACTGCAGTCTCTACGAAATCCAGTCCACCAAA 2025
Query 2015 GAA-GATTACACAGAAGCGGTCATCAGCCAAACGAAAGAAGACTGATGATGACAGTGATA 2073
||| | | || || ||||| ||| ||| || || ||||||| |||||| ||||||||||
Sbjct 2026 GAAAGCT-ACTCAAAAGCGCTCAGCAGGTAAGCGGAAGAAGAGTGATGACGACAGTGATA 2084
Query 2074 CAAGTCCAAAGGCGTCCTCTAAGAGGAAGAAGTCTGAAAACCCTATCAAGGC-CTCCCC- 2131
||||||||||||| |||||||||||||||||| ||||||| || ||||| | |||
Sbjct 2085 CAAGTCCAAAGGCATCCTCTAAGAGGAAGAAGACTGAAAAACCGGCCAAGGAGCAGCCCT 2144
Query 2132 -GGCTCCTTCAAAGTCTGCATCAAAAGAGAAGCCAGTAAAAAG-GGCTGGAAAAGGGAAA 2189
|||||||||||| |||| ||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 2145 TGGCTCCTTCAAAATCTGTATCAAAAGAGAAGCCAGGAAAAAGAGGC-GGAAAAGGGAAA 2203
Query 2190 GACAAG-CC---GAG--T-G--ATAAAGTGCTGAAAAATGCAATCGTTGAGATCTTGAAA 2240
||||| || ||| | | || ||| |||||| |||||| |||| |||||||||
Sbjct 2204 GACAAAACCAAAGAGCCTAGTGATGAAGAATTGAAAACTGCAATTATTGATATCTTGAAA 2263
Query 2241 AGAGTGGACTTTAGTACGGCTACGTTCACGGACATCCTTAAA-GAACTTGCTAAGGAGTT 2299
| |||||||| | ||||| || ||||| |||||||| || || || | | | ||||
Sbjct 2264 GGGGTGGACTTCAACACGGCCACATTCACTGACATCCTCAAGCGA-CTAGATGATAAGTT 2322
Query 2300 CACAGA--AGATCTCAC-TCCAAGAAAGTCATCTATAAAGATGATAATCCAAGAGGAGCT 2356
|| | | || |||| | || || |||||||||||| ||| |||| |||||||| || ||
Sbjct 2323 CAAA-ATCAG-TCTCGCCTCAAA-AAAGTCATCTATTAAGCTGATGATCCAAGATGAACT 2379
Query 2357 CACCAAATTAGCAGATgaggaggaggaggaggaaa-agaaagaagaggattcagagaagg 2415
||| || |||||||||| | ||||| |||||| |||| ||||||||| | ||| | |
Sbjct 2380 CACTAAGCTAGCAGATGAAGCCGAGGATGAGGAAGGAGAA-GAAGAGGATGCTGAGCATG 2438
Query 2416 aggaag 2421
||||||
Sbjct 2439 AGGAAG 2444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105852790855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5