BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26650.1
Length=2509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492141 jgi|Araly1|492141|fgenesh2_kg.7__1574__AT4G26650.1 3548 0.0
Ahg495641 jgi|Araly1|495641|fgenesh2_kg.8__1457__AT5G55550.1 1014 0.0
> Ahg492141 jgi|Araly1|492141|fgenesh2_kg.7__1574__AT4G26650.1
Length=2401
Score = 3548 bits (1921), Expect = 0.0
Identities = 2285/2444 (93%), Gaps = 91/2444 (4%)
Strand=Plus/Plus
Query 18 TTCTAACACCAAAAGAGAGAAGCAAATCTCAAATTCTT--CCCCTATTATTATATGTGAC 75
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TTCTTACACCAAAAGAGAGAAGCAAATCTCAAATTCTTCCCCCCTATTATTATATGTGAC 60
Query 76 TGTTGTTGTTTTTCTCTCTTTTACCATCTTTGGCCTGAAG-----aaaaaaaaaaGGAAT 130
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TGTTGTTGTTGTTCTCTCTTTTACCATCTTTGGCCTGAAGAAAAAAAAAAAAAAAGGAAT 120
Query 131 CCTTCTTAATGGATTTGGTAAATCAATTAAGAAAGCATTACACAAAATAAAAAAGGAAAG 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTTCTTAATGGATTTGGTAAATCAATTAAGAAAGCATTACACAAAATAAAAAAGGAAAG 180
Query 191 TTTTTTAATAAGCTTCATTgagagagagatatagagagag-aa-a-agagagagaggcca 247
||||||||||| | ||||||||||||||||||||||| || | ||||||||||||||
Sbjct 181 ATTTTTAATAAG---C-TTGAGAGAGAGATATAGAGAGAGAAAGAGAGAGAGAGAGGCCA 236
Query 248 ta-ttttgataagagaagaagaaccct-t----atagagaaagagaaagagagagacaga 301
|| |||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 237 TATTTTTGATAAGAGAAGAAGAACCCTATAGAGAAAGAGAAAGAGAAAGAGAGAGACAGA 296
Query 302 gagagTGGATGGATGTCTTATAGAATGAACAAAACATCCTCTGTTTCTCTTGTCCTTGTC 361
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAGAGTGGATGGATGTCGTATAGAATGAACAAAACATCCTCTGTTTCTCTTGTCCTTGTC 356
Query 362 CCTTTTTCCAGATCTTAAGGTTTTCCACATTTTATCATCTGGGTCCTCTCCTTAATGATT 421
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 357 CCTTTTTCCAGATCTTAAGGTTTCCCACATTTTATCATCTGGGCCCTCTCCTTAATGATT 416
Query 422 TGAAGACACTC-AATTCCTATTTGATCGGGGACTAGAATTTGGATTCTGTTTCAGACAAA 480
|||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 417 TGAAGATAC-CAAATTCCTATTTGATC-GGGACTAGAATTTGGATTCTGTTTCAGACAAA 474
Query 481 AGTAGATTTCCCTGTCTCTTTCCCGTTTGATTTTCAATAAGATGAATCCGGAGGAGCAAA 540
|||||||||||||| || | | ||| |||||||||||| |||||||||||
Sbjct 475 AGTAGATTTCCCTG--TC--T--C-------TTT--ATAAGATGAATCTGGAGGAGCAAA 519
Query 541 AGATGGAATCTGCATCGGATCTGGGCAAGCTCTTCATTGGCGGGATTTCATGGGACACAG 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 520 AGATGGAATCTGCATCGGATCTGGGGAAGCTCTTCATTGGCGGGATTTCATGGGATACAG 579
Query 601 ATGAAGAACGACTGCAAGAGTATTTTGGCAAGTATGGAGATTTGGTTGAAGCTGTGATCA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 ATGAAGAACGACTGCAAGAGTATTTTGGCAAGTATGGAGATTTGGTTGAAGCTGTGATCA 639
Query 661 TGAGAGACCGTACTACCGGACGTGCCCGTGGCTTTGGGTTTATCGTTTTTGCAGATCCTT 720
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TGAGAGACCGTACTACTGGACGTGCCCGTGGCTTTGGGTTTATCGTTTTTGCAGATCCTT 699
Query 721 CTGTTGCCGAGAGAGTCATCATGGACAAACACATCATTGATGGCCGCACGGTCGAGGCGA 780
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 700 CTGTTGCAGAGAGAGTCATCATGGACAAACACATCATTGATGGCCGTACGGTCGAGGCGA 759
Query 781 AGAAAGCTGTCCCGCGGGATGATCAGCAAGTGCTAAAACGACACGCCAGTCCAATGCACC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 AGAAAGCTGTCCCGCGGGATGATCAGCAAGTGCTAAAACGACACGCCAGTCCAATGCACC 819
Query 841 TTATCTCACCTAGCCATGGTGGTAATGGTGGTGGAGCACGGACAAAGAAGATCTTTGTTG 900
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 820 TTATCTCACCTAGCCATGGTGGTAATGGTGGTGGTGCACGGACAAAGAAGATCTTTGTTG 879
Query 901 GAGGTTTACCGTCTAGCATTACTGAGGCCGAGTTCAAGAACTACTTTGATCAGTTTGGTA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GAGGTTTACCGTCTAGCATTACTGAGGCCGAGTTCAAGAACTACTTTGATCAGTTTGGTA 939
Query 961 CAATTGCTGATGTTGTGGTAATGTATGATCATAATACACAGAGGCCAAGAGGCTTTGGCT 1020
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 CAATTGCTGACGTTGTGGTAATGTATGATCATAATACACAGAGGCCAAGAGGCTTTGGCT 999
Query 1021 TCATCACTTTTGATTCCGAAGAGTCTGTTGATATGGTTCTCCACAAGACCTTTCATGAGC 1080
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TCATCACATTTGATTCCGAAGAGTCTGTTGATATGGTTCTCCACAAGACCTTTCATGAGC 1059
Query 1081 TAAACGGAAAAATGGTTGAGGTTAAAAGAGCAGTGCCAAAGGAGCTCTCCTCGACTACTC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 TAAACGGAAAAATGGTTGAGGTTAAAAGAGCAGTGCCAAAGGAGCTCTCCTCGACTACTC 1119
Query 1141 CTAACCGAAGCCCACTTATTGGGTATGGTAACAACTATGGAGTAGTCCCTAATAGGTCTT 1200
||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| |
Sbjct 1120 CTAACCGAAGCCCTCTTATTGGGTATGCTAACAACTACGGAGTAGTCCCTAATAGGTCAT 1179
Query 1201 CTGCTAATAGCTACTTCAATAGTTTTCCTCCTGGTTATAATAATAATAATCTAGGCTCTG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 CTGCTAATAGCTACTTCAATAGTTTTCCTCCTGGTTATAATAATAATAATCTAGGCTCTG 1239
Query 1261 CTGGCCGGTTTAGTCCTATTGGTAGCGGTAGAAATGCTTTCTCTAGCTTCGGGCTCGGAT 1320
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1240 CTGGCCGGTTTAGTCCTATTGGTAGCGGTAGAAATGCTTTCTCTAGCTTTGGGCTTGGTT 1299
Query 1321 TGAATCAAGAACTGAATTTGAATTCAAACTTTGATGGAAACACTCTTGGGTATAGCCGGA 1380
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1300 TGAATCAAGAACTAAATTTGAATTCAAGCTTTGATGGAAACACTCTTGGGTATAGCCGGA 1359
Query 1381 TCCCTGGCAACCAATACTTCAACAGTGCTTCACCAAACCGTTACAACTCTCCAATTGGGT 1440
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 TCCCAGGCAACCAGTACTTCAACAGTGCTTCACCAAACCGTTACAACTCTCCAATTGGGT 1419
Query 1441 ACAACAGAGGAGACTCTGCTTACAACCCGAGCAACAGAGACTTGTGGGGAAACAGAAGCG 1500
|||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1420 ACAATAGAGGCGACTCTGCTTACAACCCGAGCAACAGAGACTTATGGGGAAACAGAAGTG 1479
Query 1501 ATTCCTCTGGTCCAGGTTGGAACTTGGGAGTTTCGGTTGGTAACAACAGAGGAAACTGGG 1560
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1480 ATTCTTCTGGTCCCGGTTGGAACTTGGGAGTTTCGGTTGGTAATAACAGAGGAAACTGGG 1539
Query 1561 GACTTTCTTCTGTGGTGAGCGATAACAATGGCTATGGAAGAAGCTATGGGGCTGGTTCTG 1620
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1540 GACTTTCTTCTGTGGTGAGCGATACCAATGGCTTTGGAAGAACCTATGGGGCTGGTTCTG 1599
Query 1621 GACTTTCGGGGTTATCATTCGCGGGTAATACAAACGGTTTTGATGGCTCTATAGGGGAAT 1680
||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1600 GACTTTCTGGGTTATCATTCTCGGGTAACACAAACGGTTTTGATGGCTCTATAGGGGAAT 1659
Query 1681 TGTATAGAGGCAGCTCAGTTTATAGCGACTCAACATGGCAGCAGTCAATGCCTCATCATC 1740
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1660 TGTATAGAGGCAGCTCAGTTTATAGCGACTCAACGTGGCAGCAGTCAATGCCTCATCATC 1719
Query 1741 AGTCTTCTAATGAGTTAGACGGCTTGTCTCGCTCTTATGGCTTTGGTATTGACAATGTAG 1800
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 AGCCTTCTAATGAGTTAGACGGCTTGTCTCGCTCTTATGGCTTTGGTATTGACAATGTAG 1779
Query 1801 GCTCAGACCCATCAGCCAATGCCTCAGAAGGATACTCCGGAAACTACAATGTCGGAAATA 1860
||||||||||||| ||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 1780 GCTCAGACCCATCTGCCAATGCCTCAGAAGGTTACCCCCAAAACTACAATGTCGGAAATA 1839
Query 1861 GACAAACACATAGAGGTATTGAAGCATAGAAAGAAATCGACGAAGAGAAGTGAGAATTGT 1920
|||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 1840 GACAAACACATAGAGGTATTGAAGCATAGAAA-AG-TCGACGAAGAGAAGTGAGATTTGT 1897
Query 1921 AGATCAAGAAGAACAGCCATTTCCGTTGCAGAGTTTGAAGAGTTGTTATTTCGATATCAA 1980
|||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1898 AGATCAAGAA---CAGCCATTTCCGTTGCAGAGTTTGAAGAGTTGTTATT-CAATATCAA 1953
Query 1981 GTAGAGAAAGAAACCAACTTTCTTCATCACAGTGAGTTTCTTGTTTTGtttttttCGTCG 2040
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1954 GTAGAGAAAGAAACCAACTTTCTTCATCACAGTGAGTTTCTTGTTTT-TTTTTTTCGTCG 2012
Query 2041 TTAGCATCACAAACACAAAAAA-----GAGAAGTTTATTTTT---ACTTTAAAAATTCTT 2092
|||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||
Sbjct 2013 TTAGCATCACAAACACAAAAAAAAAAAGAGAAGTTTTTTTTTTTTACTTTTAAAATTCTT 2072
Query 2093 ACATAAGATAAGATCAGATTGGTAGCTGCAAAGATACAACATGGATGATaaaaaaa---G 2149
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 2073 ACATAAGATAAGATCAGATTGGTAGCTGCAAAGATACAACATGGATGATAAAAAGACTTG 2132
Query 2150 ATTT--G-GTTTCGTCTCCATAGCAATAACCAGAGATCGTTGATTCTCGATCACTATTCT 2206
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2133 GTTTCAGCGTTTCGTCTCCATAGCAATAACCAGAGATCGTTGATTCTCGATCACTATTCT 2192
Query 2207 TTAGGTTTCTCTCCTTCTTCTTCCATGATTTCTTGATGTTGTGTGCTCTGTTTGTAACTC 2266
|||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 2193 TTAGGTTTCTCTTCTTCTTCTTCCAAGATT-CTTGATGTTGTGTGCTCTGTTTGTAACTC 2251
Query 2267 TAATTGTTAAAATTTTTTATGTTACAGAttttttttttcttttggtttttaaactttgga 2326
||||||| ||| |||||| | ||| | | ||| || | | || || |
Sbjct 2252 TAATTGTGAAATTTTTTTTT-TTA-A-ACTTTCGATT-C----G------AA--TT-G-- 2292
Query 2327 ttcgaattgttcatgggaacttttggatttttcTATTAGCGTGAGAGAAAACACATTGTG 2386
||| | | | || |||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 2293 TTC-A-T-G-----GG-AACTTTTGAATTTT-CTATTAGCGTGAGAGAAAACA--TTGTG 2340
Query 2387 CAAAAGGCTCCAAAATGATTATTTTGTTACATTTCATACTTTTT 2430
|||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 2341 CAAAAGGCTCCAAAATGATTATTTTGTTGCATTTGATATTTTTT 2384
> Ahg495641 jgi|Araly1|495641|fgenesh2_kg.8__1457__AT5G55550.1
Length=2040
Score = 1014 bits (549), Expect = 0.0
Identities = 1218/1524 (80%), Gaps = 114/1524 (7%)
Strand=Plus/Plus
Query 554 ATCGGATCTGGGCAAGCTCTTCATTGGCGGGATTTCATGGGACACAGATGAAGAACGACT 613
|||||||||||| |||||||||||||| |||||||| ||||| |||||||||||| | |
Sbjct 192 ATCGGATCTGGGGAAGCTCTTCATTGGTGGGATTTCGTGGGATACAGATGAAGAAAG-GT 250
Query 614 GCAAGAG--TATTTTGGCAAGTATGGAGAT-TTGGTTGAAGCTGTGATCATGAGAGACCG 670
||||| |||||| |||| ||||| ||| || ||||||||||||||||||||||| ||
Sbjct 251 -TAAGAGACTATTTTAGCAACTATGGTGATGTT-GTTGAAGCTGTGATCATGAGAGATCG 308
Query 671 TACTACCGGACGTGCCCGTGGCTTTGGGTTTATCGTTTTTGCAGATCCTTCTGT-TGCCG 729
| | || |||||||| |||||||| || || || || ||||||||||||| ||| | | |
Sbjct 309 TGCCACAGGACGTGCACGTGGCTTCGGCTTCATTGTCTTTGCAGATCCTTGTGTCT-CAG 367
Query 730 AGAGAGTCATCATGGACAAACACATCATTGATGGCCGCACGGTCGAGGCGAAGAAAGCTG 789
||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||| || |
Sbjct 368 AGAGAGTGATCATGGAGAAACACATCATCGATGGCCGCACGGTTGAGGCCAAGAAGGCCG 427
Query 790 TCCCGCGGGATGATCAGCAAGTGCTAAAACGACACGCCAGTCCAATGCACCTTATCTCAC 849
| || || ||||||||||| ||||||||||||||||| ||||| || || ||||||||||
Sbjct 428 TGCCTCGAGATGATCAGCAGGTGCTAAAACGACACGCTAGTCCTATCCAACTTATCTCAC 487
Query 850 CTAG-CCATGGTGGTAATGGTGGTGGAGCACGGACAAAGAAGATCTTTGTTGGAGGTTTA 908
|| | |||||| || ||| |||||| | |||||||||||||||||||||||||||||
Sbjct 488 CT-GTCCATGGCGG---TGGCGGTGGA--A-GGACAAAGAAGATCTTTGTTGGAGGTTTA 540
Query 909 CCGTCTAGCATTACTGAGGCCGAGTTCAAGAACTACTTTGATCAGTTTGGTACAATTGCT 968
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCGTCTAGCATTACCGAGGAAGAGTTCAAGAACTACTTTGATCAGTTTGGTACAATTGCT 600
Query 969 GATGTTGTGGTAATGTATGATCATAATACACAGAGGCCAAGAGGCTTTGGCTTCATCACT 1028
|||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 601 GATGTTGTGGTAATGTATGATCATAACACGCAGAGGCCAAGAGGTTTTGGCTTCATCACA 660
Query 1029 TTTGATTCCGAAGA-GTCTGTTGATATGGTTCTCCACAAGACCTTTCATGAGCTAAACGG 1087
|||||||| || || | ||||||||| |||||| |||||||||||||||||||| || ||
Sbjct 661 TTTGATTCAGATGATG-CTGTTGATAGGGTTCTTCACAAGACCTTTCATGAGCTCAATGG 719
Query 1088 AAAAATGGTTGAGGTTAAAAGAGCAGTGCCAAAGGAG-CT-CTCCTCGACTACTCCTAAC 1145
||| | || ||||| |||||||| || || |||||| || | ||| | | || ||||
Sbjct 720 GAAACTAGTCGAGGTCAAAAGAGCTGTACCTAAGGAGACTTCCCCT-GTTT-CTAATAAC 777
Query 1146 CGAAGCCCACTTATTGGGTATGGTAACAACTATGGAGTAGTCCCTAATAGG-TCTTCTGC 1204
|||||||| ||| ||| ||| |||||||||| | |||||||| | ||||||
Sbjct 778 CGAAGCCCGCTTCCTGGC---GGTCTTAACTATGGAGGCGGGTCTAATAGGAT-TTCTGC 833
Query 1205 TAATAGCTACTTCAATAGTTTTCCTCCTGGT--TA-TAATAATAATAATCTAGGCTCTGC 1261
|||||||||||| |||| ||| |||||||| | | | |||| ||||||||| |||
Sbjct 834 TAATAGCTACTTTAATAACTTTGCTCCTGGTCCTGGTTTTTATAACAATCTAGGCCCTGT 893
Query 1262 TGGC---CGGTTTAGTCCTATT---GGTAGCGGTAGAAATGCT-TTCTCTAGCTT-CGGG 1313
||| ||||||||||||||| ||||| ||||||||||| || ||| |||| |||
Sbjct 894 TGGTGGTCGGTTTAGTCCTATTATTGGTAGTGGTAGAAATGCGGTT-TCT-GCTTTCGGC 951
Query 1314 CTCGGATTGAATCAAGA----ACT--GAATTTGAATTCAAACTTTGATGG-A-AA-CACT 1364
||||| |||||||| || | | |||||||||| ||| || |||||| | || | ||
Sbjct 952 CTCGGTTTGAATCATGAGTTGAGTTTGAATTTGAATCCAAGCTATGATGGGACAAGCTCT 1011
Query 1365 -C-TT-GGGTATAGCCGGATCCCTGGCAACCAATACTTCAACAGTGCTTCACCA-AACCG 1420
| || ||||||| ||| || || |||||| ||||||||| ||||||| || |||||
Sbjct 1012 ACATTTGGGTATAACCGTATTCCAAGCAACCCTTACTTCAACGGTGCTTC-CCTGAACCG 1070
Query 1421 TTACAACTCTCCAATTGGGTACAACAGAGGAGACTCTGCTTACAACCCGAGCAACAGAGA 1480
||||| ||||||||| ||| |||| ||| || ||| |||||| ||| ||| |||||
Sbjct 1071 TTACACCTCTCCAATCGGGCACAATAGAACTGAGTCTCCTTACATTTCGAACAATAGAGA 1130
Query 1481 CTTGTGGGGAAACAGAAGCGATTCCT-CTGGTCCAGGTTGGAACTTGGGA-GTTTCGGTT 1538
||| ||||||||||||| ||| | | | ||||| |||||||||||| | || ||| |
Sbjct 1131 CTTATGGGGAAACAGAACCGAGAC-TGCAGGTCCCGGTTGGAACTTGA-ATGTCTCGAAT 1188
Query 1539 GGTAACAACAGAGGAAACTGGGGACTT--T-CTTCTG-TGGTG--AGCGATAACAATGGC 1592
| |||||||||||||| ||||||||| | |||||| || || | ||||||||||||
Sbjct 1189 GAAAACAACAGAGGAAATTGGGGACTTCCTTCTTCTGCTGTTGGTAATGATAACAATGGC 1248
Query 1593 TATGGAAGAAGCTATGGGGCTGGTTCTGGACTTTCGGGGTTATCATTCGCGGGTAATACA 1652
||||||||| |||| || | ||||||||||||| || |||| ||| |
Sbjct 1249 CATGGAAGAAACTATAGGACAAGTTCTGGACTTTCCTCGTCCCCATT------TAA--C- 1299
Query 1653 AACGGTTTTGATGGCTCTATAGGGGAATTGTATAGAGGCAGCTCAGTTTATAGCGACTCA 1712
|||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1300 ---GGTTTTGAAGGTTCTATAGGGGAATTGTACAGAGGCAGCTCAGTTTACAGCGACTCA 1356
Query 1713 ACATGGCAGCAGTCAAT-GC--CT--CATCATCAGTCTTCTAATGAGTTAGACGGCTTGT 1767
|| |||||||| ||| || || | || |||||||||| | ||| ||||| ||||
Sbjct 1357 ACGTGGCAGCAA-CAACAGCAGCTAGCGTC-TCAGTCTTCTCACGAGCTAGACAATTTGT 1414
Query 1768 CTCGCTCTTATGGCTT-TGGTATTGACAATGTAGGCTCAGACCCATCAGCCAATGCCTCA 1826
|||||||||| || || || ||||||||||||||| ||||||||||| || |||| ||||
Sbjct 1415 CTCGCTCTTACGG-TTATGATATTGACAATGTAGGTTCAGACCCATCTGCAAATGACTCA 1473
Query 1827 GAAGGATACTCCGGAAACTACAATGTCGGAAATAGACAAAC-ACATAGAGGTATTGAAGC 1885
||||| ||| |||| ||||||||| |||||||||||||| | |||||||||||| ||
Sbjct 1474 GAAGGTTACAATGGAAGCTACAATGTTGGAAATAGACAAACTA-ATAGAGGTATTGCGGC 1532
Query 1886 ATAG---A--AAGAAATC--GA---CGAAGAGAA-GT-GAGA-ATT-GTAGATCAAGAAG 1931
|||| | || ||| | || | || | || || |||| ||| |||||| | |||
Sbjct 1533 ATAGGTTATCAA-AAACCAAGAAAACAAAAAAAAAGTTGAGAGATTTGTAGATTGA-AAG 1590
Query 1932 AACAGCCA-TTTCCGTTGCAGAGTTTGAAGAGTTGTTATTTCGATATCAAGTAGAGAAAG 1990
| | ||| |||| |||||||||||||||||| ||| || | | ||| | || ||||
Sbjct 1591 CA-A-CCAATTTCAGTTGCAGAGTTTGAAGAG--GTT-TT-CT-TCTCA--T-GACAAAG 1640
Query 1991 AAACCAACTTTCTTCATCACAGTG 2014
| ||||||||| || |||||||||
Sbjct 1641 ACACCAACTTTGTTGATCACAGTG 1664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94578078335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5