BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26660.1
Length=2693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492139 jgi|Araly1|492139|fgenesh2_kg.7__1572__AT4G26660.1 3539 0.0
> Ahg492139 jgi|Araly1|492139|fgenesh2_kg.7__1572__AT4G26660.1
Length=2593
Score = 3539 bits (1916), Expect = 0.0
Identities = 2396/2615 (92%), Gaps = 83/2615 (3%)
Strand=Plus/Plus
Query 65 AAAACCATGAAGTCTCCGGCGATATTAAGCGAGAACAGGTTCCTAGGCAGCATTACAAGT 124
||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 24 AAAACAATGAAGTCTCCAGCGATATTAAGCGAGAACAGGTTCTTAGGCAGCATTACAAGT 83
Query 125 TCTTCCATCCGAAATCTGCTTCCAAAATCTATCTCAGGGAAGCAGAAACCAATCATCCAA 184
||||||||| ||||| ||||||||||||| |||||| |||||||||||| | ||||||
Sbjct 84 TCTTCCATCAGAAATTTGCTTCCAAAATCCATCTCAACGAAGCAGAAACC-A--ATCCAA 140
Query 185 AACCCAGATACTAAGATTCCCAGATCCAACGACGAGAACGCGATTCCTGTAGATCCAAAC 244
|||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 141 AACCCAGAAAATAAGATTCCCAGATCCAACGATGAGAACGCGATTCCTGTAGATCCAAA- 199
Query 245 CAAAAGGCTAGCGATCATCACACCGCTCTTCAGTTCACGAAGCAATCTGACTCAAAGGAT 304
| || | | ||| | | | |||||||| |||||||||||||||||| | ||||||
Sbjct 200 C--AA----A-C-ATC--C-CGCTGCTCTTCACTTCACGAAGCAATCTGACACCAAGGAT 248
Query 305 -G-G------T----AATTTCGGAGAGC-CAATTAAGGACAATAAAATGGGACAAAGCAC 351
| | | |||||| |||||| | | ||| ||||||||||||||||| ||
Sbjct 249 GGTGAAACCCTAACAAATTTCCGAGAGCTTGA-TGAGGTCAATAAAATGGGACAAAACAA 307
Query 352 TTTTGCTGAAGACAAGCGCAGT-CTTCTGGATTCACCATTAAAGGTTGAATCAAGGAGTA 410
|||||||| |||||||| ||| || | | | |||||||| | ||||||||| ||||||
Sbjct 308 TTTTGCTGGAGACAAGCAAAGTCCTGC-GAAATCACCATTGAGGGTTGAATCCAGGAGTG 366
Query 411 TACTTTCTAGAAGAACCAATTCAGTGCCTAGTGAAATTAAAGAGGAAGATGACGACGACT 470
||||||||| ||||||||||||| ||||||||||||||| ||||||||| | ||||| |
Sbjct 367 TACTTTCTAAAAGAACCAATTCAATGCCTAGTGAAATTACAGAGGAAGA-G--GACGA-T 422
Query 471 -CATTGGGTGATCAGATTCGTGAACTAAAGGAAGAGCTCATAAGAACAAAGTCGGATGGG 529
|||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 423 CCATTGGGTGACCAGATTCGAGAACTAAAGGAAGAACTCATAAGAACAAAGTCTGATGGG 482
Query 530 TACAACAAAGCTGATGCAAGTAAGAGTGGACACTTTGCACGTGACAGTTTAAGTCAATTG 589
| ||||| |||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 483 T---ACAAACCTGATGGAAGTAAGAGCGGACACTTTGCACGGGACAGTTTAAGTCAATTG 539
Query 590 AGAGTCAGTATCAACAAATCTTTACTCATGTCGTGTCCAAAAAGAGATGAATCTG-AGGG 648
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 540 AGAGTCAGTATCAGCAAATCTTTACTCATGTCGAGTCCAAAAAGAGATGAATCTGAAGGG 599
Query 649 AAA-AGA-G---GT-GATCGTG-----GATGGTGAAGATGTGCTGGAATTGAATAAACAT 697
||| ||| | || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 AAAGAGATGAATGTGGATCGTGATAATGATGGTGAAGATGTGCTGGAATTGAATAAACAT 659
Query 698 ATTGAGAAGCTT-CACGGTTCTTATGATTCTGTTCACTCCTCATTTGCAAGTGCTTCATG 756
|| |||||| || || ||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct 660 ATCGAGAAG-TTGCAAGGTTCTTATGATTCTATTCAATCCTCATTTGCAAGTGCTTCAGG 718
Query 757 CTATGAAGCCGACTCGATGAGTG--GA-GATGATGAGGATGTCTGCTCAGAAGACTTGGA 813
|| |||||| ||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 719 CTGTGAAGCAGACTCGATGAGTGAAGATGATGATGATGATGTCTGCTCAGAAGACTTGGA 778
Query 814 GAAA-CCAATGCATGGAAACCATAAAGATGTTGACTTTGTAGATAATGATCCAAGCCAGC 872
||| |||| ||||||||||||| |||||| || ||||||||| |||||||||||||||
Sbjct 779 CAAACCCAA-GCATGGAAACCATGAAGATGCAGAATTTGTAGATGATGATCCAAGCCAGC 837
Query 873 TCGACAATGTTGAATTCGATACAACGGGTAGTGGCATTTCAATCAGATCACAGCTTCCTA 932
|| ||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 838 TCAACAATGTTGGATTCGATACAGCGGGTAGTAGCATTTCAATCAGATCACAGCTTCCTA 897
Query 933 GTTGCGTTCTAGAAGAGCCAATTTTCTCAGAATCTCCAAAGTTTAAGAATGTTCAGAAGA 992
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 898 CATGTATTCTAGAAGAGCCAATTTTCTCAGAATCTCCAAAGTTCAAGAATGTTCAGAAGA 957
Query 993 GTGTAGCTGCATCGACAAAGTTTTCAGCAAATCCTAGGAATGTGTCTGAAAGCTCCAACA 1052
|||||||||||||||||||||||||||||| || ||||||||||||||| |||| |||||
Sbjct 958 GTGTAGCTGCATCGACAAAGTTTTCAGCAAGTCTTAGGAATGTGTCTGAGAGCTTCAACA 1017
Query 1053 TTGGAGACATGAAAGTCAATCAGATTAGCCCGTGTATGTCAAAGAAGGTTTCAGGTCCTA 1112
| |||||||||||||||||| | |||||||||| ||||||||||||| ||||||||||||
Sbjct 1018 TCGGAGACATGAAAGTCAATGAAATTAGCCCGTCTATGTCAAAGAAGCTTTCAGGTCCTA 1077
Query 1113 CAGATTCTCTAGCTGCTAGTCTTCAGAGAGGGCTGCAAATTATAGACTATCACCAAGGGA 1172
|||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1078 CAGATTCTATAGCTGCTAGTCTTCAGAGAGGGTTGCAAATTATAGACTATCATCAAGGGA 1137
Query 1173 GCTCACTATCAAAAAGTTCATCTGTTTCCTTCTCTTTTGGCCATATGGCATTGAAACCTT 1232
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GCTCACTATCAAAAAGTTCTTCTGTTTCCTTCTCTTTTGGCCATATGGCATTGAAACCTT 1197
Query 1233 GCGCAGAAGGTGAGAATCTTAATGCTTCAGTCCAATCTTTTAGAAAAGATAAAGCTTCAG 1292
||||||||| ||| |||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1198 GCGCAGAAGTTGACAATCTTAATGCTTCAGTCCAGTCATTTAGAAAAGATAAAGCGCCAG 1257
Query 1293 AAGGTGGATTGTCGTCGATTCTCCTATGTCTTTCATGTAGAAAGAAAGTTGACCAAGAAG 1352
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AAGGTGGATTATCGTCCATTCTCCTATGTCTTTCATGTAGAAAGAAAGTTGACCAAGAAG 1317
Query 1353 CTGAAGTAACAGAAGAAGCTGGTTCAAACGAAAAACATCTCAAGAACATGTGTATGGAGC 1412
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CTGAAGTAACACAAGAAGCGGGTTCAAACGAAAAACATCTCAAGAACATGTGTATGGAGC 1377
Query 1413 AAGCAGCTAAAATTGAGGAGCTAACTCTCCTGCTTAGGAAATCAGATGATGGAGAAGATG 1472
||||||||||||||||||||||||||| ||||||||||||||||| | | ||||
Sbjct 1378 AAGCAGCTAAAATTGAGGAGCTAACTCGCCTGCTTAGGAAATCAG--G-T------GATG 1428
Query 1473 GAACAGAGTTCATCAAAGAAACATATGAGACGAAACAAATTAGTGAAGAGTTTGGAAAAA 1532
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1429 GAACAGAGTTCATCAAAGAAACATATGAGATAAAACAAATTAGCCAAGAGTTTGGAGAAA 1488
Query 1533 CAAACTTT-GAGGTAAGTGAAAAGGAAGCTCTTCTCAAGGAGATTGCAGACCTAAAGAGC 1591
|||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1489 CAAA-TTTGGAGGTAAGTGAAAAGGAAGCTCTTCTCAAGGAGATTGCATACCTAAAGAGC 1547
Query 1592 AAGCTGCAGCCTACTAAGTCCACAGACAATCTGAGATCCTCGTTACTACTACGATCCATT 1651
|||||||||||||||||||| ||| |||||||||||||||| || |||||||||||||||
Sbjct 1548 AAGCTGCAGCCTACTAAGTCTACAAACAATCTGAGATCCTCTTTGCTACTACGATCCATT 1607
Query 1652 CAAATGCGCAAAAGCATTGATGTTAGCAGGAATGGTGAGAACAGTGATGATCTAGCGAAA 1711
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 1608 CAAATGCGCAAAAGCATTGATGTTACCAAGAATGGTGAGAACAGTGATGTTCTAGCGAAA 1667
Query 1712 GAAAGGGAGATGTGGACAGAAATGGAGAGTGAGTGGATATCCTTAACAGATGATCTCAGA 1771
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1668 GAAAGGGAGATGTGGACAGAAATGGAGAGTGAGTGGATATCTTTAACAGATGATCTCAGA 1727
Query 1772 ATGGATATCGATAACCATCGCAGTCGAGCTGAGAATCTAGAGTTTGAGCTCAAGCAAGAG 1831
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1728 ATGGATATCGATAACCATCGCAGTCGAGCTGAGAATCTAGAGATTGAGCTCAAGCAAGAG 1787
Query 1832 AAGCTAGCCACTGAAGAGTTGAATGACGCGCTCACTAGAGCTGTGCTTGGCCACAGTAGA 1891
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1788 AAGCTAGCCACTGAAGAGTTGAATGATGCGCTCACTAGAGCTGTGCTTGGCCACAGTAGA 1847
Query 1892 TTCATAGAGCAGTACACAGAGCTGCAGGAGACGTACAATGAACTTGGGGAGAAGCACAGT 1951
||||||||||||||||| ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct 1848 TTCATAGAGCAGTACACGGAGCTGCAGGAGAAGTACAATGAACTCGGGGAGAAACACAGT 1907
Query 1952 GTGATGATGGCTGGAATAACAGATGTAAAGAAAGCAGCATCCAAGGCCGCTATGAACGGC 2011
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1908 GTGATGATGGCTGGAATAACAGATGTAAAGAAAGCAGCCTCCAAGGCCGCTATGAACGGT 1967
Query 2012 CGCCATGGAAAGCGTTTTGCCAAAGCCTTTTCAGATGAGCTTTCTGCCATCagagctgag 2071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 CGCCATGGAAAGCGTTTTGCCAAAGCCTTTTCAGATGAGCTTTCTGCCATCAGAGCTGAG 2027
Query 2072 aaagagaaagaaagagagctcttgaagaaggagaacaagaacctaagaaCTCAGCTGCGA 2131
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2028 AAGGAGAAAGAAAGAGAGCTCTTGAAGAAGGAGAACAAGAACCTAAGAACTCAGCTGCGA 2087
Query 2132 GATACAGCTGAAGCAGTCCAAGCTGCTGGTGAACTACTTGTCAGACTTAGAGAATCTGAA 2191
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2088 GATACAGCTGAAGCTGTCCAAGCTGCTGGTGAACTACTTGTCAGACTTAGAGAATCTGAA 2147
Query 2192 CAGGCCTTACAAGTCTCTGAGGAACGATTCAGCGTGGTGGAAGAAGAGAAAGAGAGGCTG 2251
|| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2148 CAAGTCTTACAAATCTCTGAGGAACGATTCAGCGTAGTGGAAGAAGAGAAAGAGAGGCTG 2207
Query 2252 AAGAAGCAAATGGAGCAACTAAAGAGCAAACACAAGACAGAAATAGGGACAATGAAGCAA 2311
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2208 AAGAAGCAAATGGAGCAGCTAAAGAGCAAACACAAGACAGAAATAGGGACAATGAAGCAA 2267
Query 2312 TACTTAGCAGAGAGTAAATTACCAGGATCTGCATTGTTGCAGCCATGGTACAAAGATGAG 2371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2268 TACTTAGCAGAGAGTAAATTACCAGGATCTGCATTGTTGCAGCCATGGTACAAAGATGAG 2327
Query 2372 GAAGATGAAATAGAACAAGTATCAGAACAT-GAAACCGGAGCTGTCAGTTTCGATGACTA 2430
|||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||
Sbjct 2328 GAAGATGAAATAGAACAAGTATCAGAACATCGAA-CCGGAGCTGTGAGTTTCGATGAGTA 2386
Query 2431 CGAGGATGATCAGGCTTGGAGAGCAGAGTTTGGAGCTACATATCAAGACCACCATTACTA 2490
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2387 CGAGGATGATCAGGCTTGGAGAGCAGAGTTTGGAGCTACATATCAAGACCACCATTACT- 2445
Query 2491 GTCTTTGTTTCAGACAAACGACCCTTCTCGGGTCATTTACTATGATCCTCCT---TAGTA 2547
| || |||||||||||| ||| |||||||||||||||||| |||||||||| |||||
Sbjct 2446 GA-TT-GTTTCAGACAAAAGACTCTTCTCGGGTCATTTACTGTGATCCTCCTAAGTAGTA 2503
Query 2548 CTTTTGT-ACTGTTATCTTTCATTTTGTTGTTCTATTGTATCTGCCATTATTGAACCGCT 2606
|| || | ||| ||||| || |||||||||| ||||| |||||||||||||||||||
Sbjct 2504 CTCTTCTTACTTTTATC----ATGTTGTTGTTCTCTTGTA-CTGCCATTATTGAACCGCT 2558
Query 2607 AAAAAGATTTGTAACGGTTGGAAACATTTTTACAT 2641
| || ||| ||||||||||||||||||||||||||
Sbjct 2559 ACAAGGATCTGTAACGGTTGGAAACATTTTTACAT 2593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101586683415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5