BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G26670.1 Length=1178 Score E Sequences producing significant alignments: (Bits) Value Ahg945400 jgi|Araly1|945400|scaffold_701629.1 1046 0.0 Ahg495634 jgi|Araly1|495634|fgenesh2_kg.8__1450__AT5G55510.1 514 6e-145 Ahg945396 jgi|Araly1|945396|scaffold_701625.1 108 1e-22 > Ahg945400 jgi|Araly1|945400|scaffold_701629.1 Length=673 Score = 1046 bits (566), Expect = 0.0 Identities = 625/654 (96%), Gaps = 1/654 (0%) Strand=Plus/Plus Query 122 TCAGACTTC-AGTTTAAGCTATGGCGGCGAACGATTCTTCAAATGCTATTGACATCGACG 180 |||| |||| | ||| |||||||||||| || ||||||||||| |||||||||||||||| Sbjct 1 TCAGGCTTCAACTTTTAGCTATGGCGGCCAATGATTCTTCAAAAGCTATTGACATCGACG 60 Query 181 GGAATCTCGACTCCGATTCGAATCTTAACACTGACGGTGACGAAGCGACCGATAATGATT 240 |||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||| Sbjct 61 GGAACCTCGACTCCGATTCAAACCTTAACACTGACGGTGACGAAGCGACAGATAATGATT 120 Query 241 CCTCGAAGGCATTGGTTACTATCCCTGCTCCAGCCGTTTGTCTTTTCCGGTTCGCCGGAG 300 |||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 121 CCTCAAAGGCATTGGCTACTATCCCTGCTCCAGCCGTTTGTCTTTTCCGGTTTGCCGGAG 180 Query 301 ATGCTGCTGGTGGCGCCGTTATGGGCTCTATCTTCGGATATGGTTCAGGATTGTTCAAGA 360 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATGCTGCTGGTGGCGCCGTCATGGGCTCTATCTTCGGATATGGTTCAGGATTGTTCAAGA 240 Query 361 AGAAAGGCTTCAAAGGATCATTTGCAGATGCAGGGCAGTCTGCTAAGACTTTTGCTGTTT 420 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGAAAGGCTTTAAAGGATCATTTGCAGATGCAGGGCAGTCTGCTAAGACTTTTGCTGTTT 300 Query 421 TATCTGGAGTCCACAGTTTGGTTGTTTGCCTTCTGAAGCAAATCCGAGGCAAAGATGACG 480 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 301 TATCTGGAGTCCACAGTTTGGTTGTTTGTCTTCTGAAGCAAATCCGAGGCAAAGATGACG 360 Query 481 CCATTAATGTTGGAGTAGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCCCTGGTGCTC 540 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CCATTAATGTTGGAGTTGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCCCTGGTGCTC 420 Query 541 CACAGGCTCTTCTACAGAGTTGTCTCACGTTTGGGGCATTCTCTTTTATTCTTGAGGGAC 600 |||||||||| |||||||| ||||| ||||||||||| ||||||||||| || ||||||| Sbjct 421 CACAGGCTCTACTACAGAGCTGTCTTACGTTTGGGGCTTTCTCTTTTATACTCGAGGGAC 480 Query 601 TCAACAAAAGACAAACAGCTTTGGCACACTCGGTCTCGTTGAGACACCAAACCGGACTGT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TCAACAAAAGACAAACAGCTTTGGCACACTCGGTCTCGTTGAGACACCAAACCGGACTGT 540 Query 661 TCCAAGATCATCATCGTGCTTTACCACTCTCTCTTGCTCTCCCGATCCCTGAAGAAATCA 720 ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||| Sbjct 541 TCCAAGATCATCATCGTCCTTTACCACTCTCTCTTGCTCTCCCGATCCCAGAAGATATCA 600 Query 721 AAGGAGCCTTTTCTTCTTTCTGCAAGTCCTTAGCTAAACCAAGGAAGTTCTAAT 774 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 601 AAGGAGCCTTCTCTTCTTTCTGCAAGTCCTTAGCTAAACCCAGGAAGTTCTAAT 654 > Ahg495634 jgi|Araly1|495634|fgenesh2_kg.8__1450__AT5G55510.1 Length=817 Score = 514 bits (278), Expect = 6e-145 Identities = 536/655 (82%), Gaps = 39/655 (6%) Strand=Plus/Plus Query 135 TAAGCTATGGCGGC-GAACG-ATTCTTCAAATGCTATTGACATC-G-ACGGGAATCTCGA 190 |||||||||||||| | | | |||||||||| || |||||| || | || || |||| | Sbjct 97 TAAGCTATGGCGGCTG-A-GAATTCTTCAAACGCCATTGACGTCGGTAC--GAGTCTCAA 152 Query 191 CTCCGATTCGAATCTTAA-CACTGACGGTGACGAAGCGACCGATAATGATTCCTCGAAGG 249 |||||||| || | ||| || ||| | | | || | ||| || |||| || || || | Sbjct 153 TTCCGATTCAAAACCTAACCA-TGAAGCTAATGATGTGACTAATCATGACTCTTCCAAAG 211 Query 250 CATTGGTTACTATCCCTGCTCCAGCCGTTTGTCTTTTCCGGTTCGCCGGAGATGCTGCTG 309 |||||| || |||||| |||| ||||||||||| | || |||||||||||||||||| Sbjct 212 CATTGG-TA--ATCCCTTCTCCCGCCGTTTGTCTCGTACGTTTCGCCGGAGATGCTGCTA 268 Query 310 GTGGCGCCGTT-ATGGGCTCTATCTTCGGATATGGTTCAGGATTGTTCAAGAAGAAAGGC 368 |||||||| || ||||||||||| || ||||||||||| |||||||| ||||||||||| Sbjct 269 GTGGCGCC-TTCATGGGCTCTATATTTGGATATGGTTCTGGATTGTTTAAGAAGAAAGGG 327 Query 369 TTCAAAGGATCATTTGCAGATGCAGGG-CAGTCTGCTAAGACTTTTGCTGTTTTATCTGG 427 || ||||||||||||| ||||| ||| |||||||| ||||||||||| ||||||||||| Sbjct 328 TTTAAAGGATCATTTGTGGATGC-GGGTCAGTCTGCAAAGACTTTTGCGGTTTTATCTGG 386 Query 428 AGTCCACAGTTTGGTTGTTTGCCTTCTGAAGCAAATCCGAGGCAAAGATGACGCCATTAA 487 ||| || ||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct 387 AGTACATAGTTTGGTTGTTTGCCTTCTGAAGCAAATACGAGGGAAAGATGATGCCATTAA 446 Query 488 TGTTGGAGTAGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCCCTGGTGCTCCACAGGC 547 ||||||||| || || || || ||||| ||||||||||||||||| ||||| || || || Sbjct 447 TGTTGGAGTTGCTGGATGCTGTACTGGCCTTGCTCTTAGTTTCCCCGGTGCACCGCAAGC 506 Query 548 TCTTCTACAGAGTTGTCTCACGTTTGGGGCATTCTCTTTTATTCTTGA-GGGACTCAACA 606 | |||||||||||||| || ||||| || ||||| || || ||||| ||| ||||||| Sbjct 507 AATGCTACAGAGTTGTCTTACTTTTGGTGCCTTCTCCTTCATCCTTGAAGGG-CTCAACA 565 Query 607 AAAGACAAACAGCTTTGGCACACTCGGTCTCGTTGAGACACCAAACCGGACTGT-TCCAA 665 |||| ||||| |||||||| ||||| ||||||||||||||||||||| || || ||||| Sbjct 566 AAAGGCAAACGGCTTTGGCTCACTCTGTCTCGTTGAGACACCAAACCAGAA-GTATCCAA 624 Query 666 GATCATCATCGTGCTTTACCACT-CTCTC-TTG-CTCTCCC-GATCCCTGAAGAAATCAA 721 ||| || | | ||| || ||||| ||| ||||||| | ||| ||| |||||||| Sbjct 625 ---CATGAT--T--T--ACCGCTGCTCTCGTTGGCTCTCCCAG-TCCATGATGAAATCAA 674 Query 722 AGGAGCCTTTT-CTTCTTTCTGCAAGTCCTTAGCTAAACC-AAGGAAGTTCTAAT 774 |||||| ||| ||||||||||||| |||||| | ||||| ||| ||| || ||| Sbjct 675 AGGAGC-TTTCACTTCTTTCTGCAACTCCTTAACGAAACCCAAG-AAGCTCAAAT 727 > Ahg945396 jgi|Araly1|945396|scaffold_701625.1 Length=226 Score = 108 bits (58), Expect = 1e-22 Identities = 67/71 (94%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 1108 AATCTCAATGTAAATCTGAAATCACTTGCCTTGTTTCTGCCTGAGGCGTTCTTTGACAAA 1167 ||| || |||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 226 AATATC-ATGTGAATCTGAAATCACTTGCCTTGTTTCTGCCGGAGGCGTTCTTTGACAAA 168 Query 1168 ATCATTACGGG 1178 ||||||||||| Sbjct 167 ATCATTACGGG 157 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43955723301 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5