BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26670.1
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945400 jgi|Araly1|945400|scaffold_701629.1 1046 0.0
Ahg495634 jgi|Araly1|495634|fgenesh2_kg.8__1450__AT5G55510.1 514 6e-145
Ahg945396 jgi|Araly1|945396|scaffold_701625.1 108 1e-22
> Ahg945400 jgi|Araly1|945400|scaffold_701629.1
Length=673
Score = 1046 bits (566), Expect = 0.0
Identities = 625/654 (96%), Gaps = 1/654 (0%)
Strand=Plus/Plus
Query 122 TCAGACTTC-AGTTTAAGCTATGGCGGCGAACGATTCTTCAAATGCTATTGACATCGACG 180
|||| |||| | ||| |||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 1 TCAGGCTTCAACTTTTAGCTATGGCGGCCAATGATTCTTCAAAAGCTATTGACATCGACG 60
Query 181 GGAATCTCGACTCCGATTCGAATCTTAACACTGACGGTGACGAAGCGACCGATAATGATT 240
|||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 61 GGAACCTCGACTCCGATTCAAACCTTAACACTGACGGTGACGAAGCGACAGATAATGATT 120
Query 241 CCTCGAAGGCATTGGTTACTATCCCTGCTCCAGCCGTTTGTCTTTTCCGGTTCGCCGGAG 300
|||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 CCTCAAAGGCATTGGCTACTATCCCTGCTCCAGCCGTTTGTCTTTTCCGGTTTGCCGGAG 180
Query 301 ATGCTGCTGGTGGCGCCGTTATGGGCTCTATCTTCGGATATGGTTCAGGATTGTTCAAGA 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGCTGCTGGTGGCGCCGTCATGGGCTCTATCTTCGGATATGGTTCAGGATTGTTCAAGA 240
Query 361 AGAAAGGCTTCAAAGGATCATTTGCAGATGCAGGGCAGTCTGCTAAGACTTTTGCTGTTT 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAAAGGCTTTAAAGGATCATTTGCAGATGCAGGGCAGTCTGCTAAGACTTTTGCTGTTT 300
Query 421 TATCTGGAGTCCACAGTTTGGTTGTTTGCCTTCTGAAGCAAATCCGAGGCAAAGATGACG 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 TATCTGGAGTCCACAGTTTGGTTGTTTGTCTTCTGAAGCAAATCCGAGGCAAAGATGACG 360
Query 481 CCATTAATGTTGGAGTAGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCCCTGGTGCTC 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCATTAATGTTGGAGTTGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCCCTGGTGCTC 420
Query 541 CACAGGCTCTTCTACAGAGTTGTCTCACGTTTGGGGCATTCTCTTTTATTCTTGAGGGAC 600
|||||||||| |||||||| ||||| ||||||||||| ||||||||||| || |||||||
Sbjct 421 CACAGGCTCTACTACAGAGCTGTCTTACGTTTGGGGCTTTCTCTTTTATACTCGAGGGAC 480
Query 601 TCAACAAAAGACAAACAGCTTTGGCACACTCGGTCTCGTTGAGACACCAAACCGGACTGT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCAACAAAAGACAAACAGCTTTGGCACACTCGGTCTCGTTGAGACACCAAACCGGACTGT 540
Query 661 TCCAAGATCATCATCGTGCTTTACCACTCTCTCTTGCTCTCCCGATCCCTGAAGAAATCA 720
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 541 TCCAAGATCATCATCGTCCTTTACCACTCTCTCTTGCTCTCCCGATCCCAGAAGATATCA 600
Query 721 AAGGAGCCTTTTCTTCTTTCTGCAAGTCCTTAGCTAAACCAAGGAAGTTCTAAT 774
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 AAGGAGCCTTCTCTTCTTTCTGCAAGTCCTTAGCTAAACCCAGGAAGTTCTAAT 654
> Ahg495634 jgi|Araly1|495634|fgenesh2_kg.8__1450__AT5G55510.1
Length=817
Score = 514 bits (278), Expect = 6e-145
Identities = 536/655 (82%), Gaps = 39/655 (6%)
Strand=Plus/Plus
Query 135 TAAGCTATGGCGGC-GAACG-ATTCTTCAAATGCTATTGACATC-G-ACGGGAATCTCGA 190
|||||||||||||| | | | |||||||||| || |||||| || | || || |||| |
Sbjct 97 TAAGCTATGGCGGCTG-A-GAATTCTTCAAACGCCATTGACGTCGGTAC--GAGTCTCAA 152
Query 191 CTCCGATTCGAATCTTAA-CACTGACGGTGACGAAGCGACCGATAATGATTCCTCGAAGG 249
|||||||| || | ||| || ||| | | | || | ||| || |||| || || || |
Sbjct 153 TTCCGATTCAAAACCTAACCA-TGAAGCTAATGATGTGACTAATCATGACTCTTCCAAAG 211
Query 250 CATTGGTTACTATCCCTGCTCCAGCCGTTTGTCTTTTCCGGTTCGCCGGAGATGCTGCTG 309
|||||| || |||||| |||| ||||||||||| | || ||||||||||||||||||
Sbjct 212 CATTGG-TA--ATCCCTTCTCCCGCCGTTTGTCTCGTACGTTTCGCCGGAGATGCTGCTA 268
Query 310 GTGGCGCCGTT-ATGGGCTCTATCTTCGGATATGGTTCAGGATTGTTCAAGAAGAAAGGC 368
|||||||| || ||||||||||| || ||||||||||| |||||||| |||||||||||
Sbjct 269 GTGGCGCC-TTCATGGGCTCTATATTTGGATATGGTTCTGGATTGTTTAAGAAGAAAGGG 327
Query 369 TTCAAAGGATCATTTGCAGATGCAGGG-CAGTCTGCTAAGACTTTTGCTGTTTTATCTGG 427
|| ||||||||||||| ||||| ||| |||||||| ||||||||||| |||||||||||
Sbjct 328 TTTAAAGGATCATTTGTGGATGC-GGGTCAGTCTGCAAAGACTTTTGCGGTTTTATCTGG 386
Query 428 AGTCCACAGTTTGGTTGTTTGCCTTCTGAAGCAAATCCGAGGCAAAGATGACGCCATTAA 487
||| || ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 387 AGTACATAGTTTGGTTGTTTGCCTTCTGAAGCAAATACGAGGGAAAGATGATGCCATTAA 446
Query 488 TGTTGGAGTAGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCCCTGGTGCTCCACAGGC 547
||||||||| || || || || ||||| ||||||||||||||||| ||||| || || ||
Sbjct 447 TGTTGGAGTTGCTGGATGCTGTACTGGCCTTGCTCTTAGTTTCCCCGGTGCACCGCAAGC 506
Query 548 TCTTCTACAGAGTTGTCTCACGTTTGGGGCATTCTCTTTTATTCTTGA-GGGACTCAACA 606
| |||||||||||||| || ||||| || ||||| || || ||||| ||| |||||||
Sbjct 507 AATGCTACAGAGTTGTCTTACTTTTGGTGCCTTCTCCTTCATCCTTGAAGGG-CTCAACA 565
Query 607 AAAGACAAACAGCTTTGGCACACTCGGTCTCGTTGAGACACCAAACCGGACTGT-TCCAA 665
|||| ||||| |||||||| ||||| ||||||||||||||||||||| || || |||||
Sbjct 566 AAAGGCAAACGGCTTTGGCTCACTCTGTCTCGTTGAGACACCAAACCAGAA-GTATCCAA 624
Query 666 GATCATCATCGTGCTTTACCACT-CTCTC-TTG-CTCTCCC-GATCCCTGAAGAAATCAA 721
||| || | | ||| || ||||| ||| ||||||| | ||| ||| ||||||||
Sbjct 625 ---CATGAT--T--T--ACCGCTGCTCTCGTTGGCTCTCCCAG-TCCATGATGAAATCAA 674
Query 722 AGGAGCCTTTT-CTTCTTTCTGCAAGTCCTTAGCTAAACC-AAGGAAGTTCTAAT 774
|||||| ||| ||||||||||||| |||||| | ||||| ||| ||| || |||
Sbjct 675 AGGAGC-TTTCACTTCTTTCTGCAACTCCTTAACGAAACCCAAG-AAGCTCAAAT 727
> Ahg945396 jgi|Araly1|945396|scaffold_701625.1
Length=226
Score = 108 bits (58), Expect = 1e-22
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand=Plus/Minus
Query 1108 AATCTCAATGTAAATCTGAAATCACTTGCCTTGTTTCTGCCTGAGGCGTTCTTTGACAAA 1167
||| || |||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 226 AATATC-ATGTGAATCTGAAATCACTTGCCTTGTTTCTGCCGGAGGCGTTCTTTGACAAA 168
Query 1168 ATCATTACGGG 1178
|||||||||||
Sbjct 167 ATCATTACGGG 157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43955723301
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5