BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26680.1
Length=1778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945395 jgi|Araly1|945395|scaffold_701624.1 2436 0.0
Ahg492137 jgi|Araly1|492137|fgenesh2_kg.7__1570__AT4G26690.1 268 8e-71
> Ahg945395 jgi|Araly1|945395|scaffold_701624.1
Length=1657
Score = 2436 bits (1319), Expect = 0.0
Identities = 1505/1595 (94%), Gaps = 12/1595 (1%)
Strand=Plus/Plus
Query 1 ATGATTCGCATAAGCATC-GGAGTTAATCGCCGTCTGCGTTATCAATTCTCAAGTTTTGC 59
||||| ||| |||||| | | ||||||||||||||| ||||||| | ||||||||||||
Sbjct 21 ATGATCCGCGTAAGCA-CATGTGTTAATCGCCGTCTGTGTTATCAGTACTCAAGTTTTGC 79
Query 60 TGGCTACAGTGGATCTGAAAACCCTAGGCTCTT-TAAAACT-CTCGGCGCTGCAAACACC 117
|||||| || ||||||||||||||||||| || ||||| | | | ||||||||||| |
Sbjct 80 TGGCTATGGTCGATCTGAAAACCCTAGGCT-TTCTAAAAATCCAC-CCGCTGCAAACATC 137
Query 118 CCGATTCCTCACAGAAGGAATCCTGAACCTAAAGGCCAAGATCTTGATTTCGTCAATGTT 177
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 138 CCTATTCCTCACAGAAGCAATCCTGAACCTAAAGGCCAAGATCTTGATTTCGTCAATGTC 197
Query 178 GCTCATAGCCACCTGATTCAATCTGATTGGGATAAGCTAAATAAGCTATCAGACCACTTG 237
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 198 GCTCATAGCCACCTGATTCAATCTGATTGGGATAAGCTTAATAAGCTATCAGACCACTTA 257
Query 238 GATTCATTTAGGGTCAAGAACGTATTACTGAAGATACAGAAAGATTATCTTCTTTCTCTT 297
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||
Sbjct 258 GATTCATTTAGGGTCAAGAACGTACTACTGAAGATTCAGAAAGATTATCTTCTTTCT-TT 316
Query 298 -GAATTCTTCAATTGGGCGAAAACCCGAAACCCAGGTTCTCACTCTCTTGAAACCCATGC 356
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 317 CGAGTTCTTCAATTGGGCGAAAACCCGAAACCCAGCTTCTCACTCTCTTGAAACCCATGC 376
Query 357 TATAGTTCTTCACACTCTCACTAAAAACCGCAAGTTCAAGTCTGCAGAGTCCATTTTGAG 416
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 377 TATTGTTCTTCACACTCTTACTAAAAACCGCAAGTTCAAGTCTGCAGAGTCCATTTTGAG 436
Query 417 AGATGTACTTGTAAATGGTGGTGTGGATTTGCCTGCCAAAGTATTTGATGCTTTGTTGTA 476
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 437 AGATGTACTTGTAAATGGTGGCGTGGATTTGCCTGCCAAAGTCTTTGATGCCTTGTTGTA 496
Query 477 TTCGTACCGGGAATGTGATTCTACGCCTAGAGTGTTTGATTCACTCTTCAAAACTTTTGC 536
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TTCGTACCGGGAATGTGACTCTACGCCTAGAGTGTTTGATTCACTCTTCAAAACTTTTGC 556
Query 537 TCATTTGAAGAAATTCAGAAATGCTACAGATACTTTTATGCAGATGAAGGATTATGGGTT 596
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 557 TCATTTGAAGAAATTCAGAAATGCCACTGATACTTTTATGCAGATGAAGGATTACGGGTT 616
Query 597 TCTTCCAACTGTTGAATCTTGCAATGCTTACATGAGTTCATTACTTGGTCAAGGGAGGGT 656
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 617 TCTTCCAACTGTTGAATCTTGCAATGCTTACATGAGCTCACTACTTGGTCAAGGGAGGGT 676
Query 657 GGATATTGCTTTGAGGTTTTACAGAGAAATGCGGCGGTGTAAGATATCTCCAAACCCATA 716
|||||||||| |||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 677 GGATATTGCTCTGAGGTTTTACAGAGAAATGCGGCGGTGTAAGATTTCCCCAAACACATA 736
Query 717 CACTCTCAACATGGTAATGTCAGGTTATTGTAGGTCTGGAAAACTTGACAAGGGCATTGA 776
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 CACTCTTAACATGGTTATGTCAGGTTATTGTAGGTCTGGAAAACTTGACAAGGGCATTGA 796
Query 777 GTTACTACAAGACATGGAAAGATTGGGTTTTCGGGCTACAGATGTGTCGTATAATACTTT 836
||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 797 GTTGCTACAAGATATGGAAAGATTGGGTTTTCGGGCCACTCATGTGTCGTATAATACTTT 856
Query 837 GATAGCCGGACATTGCGAAAAGGGTCTTTTGAGCTCAGCTTTGAAGCTTAAGAACATGAT 896
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 GATAGCCGGGCATTGCGAAAAGGGTCTTTTGAGCTCAGCTTTGAAGCTTAAGAACATGAT 916
Query 897 GGGAAAGAGTGGTC-TGCAGCCTAATGTGGTTACTTTTAACACTCTCATCCATGGGTTTT 955
|||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 917 GGGAAAGAATGG-CTTGCAGCCTAGTGTGGTTACTTTTAACACTCTCATCCATGGGTTTT 975
Query 956 GCAGAGCTATGAAGTTACAAGAAGCTAGTAAGGTTTTCGGTGAGATGAAAGCGGTCAACG 1015
|||||||| ||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 976 GCAGAGCTGTGAAGCTGCAAGAAGCTAGTAAGGTTTTCGGTGAGATGAAAGCGCTCAACT 1035
Query 1016 TGGCTCCCAACACTGTCACGTATAACACGTTGATTAATGGGTACAGCCAACAGGGTGATC 1075
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1036 TGCCTCCCAACACTGTCACGTATAACACGTTGATTAATGGGTATAGCCAACAGGGTGATC 1095
Query 1076 ACGAAATGGCGTTCCGGTTTTATGAAGATATGGTCTGCAACGGGATTCAACGTGACATTT 1135
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1096 ACGAGATGGCGTTCCGGTTTTATGAAGATATGGTCTGCAACGGAATTCAGCGTGACATTT 1155
Query 1136 TGACGTACAACGCGTTGATATTTGGACTATGCAAACAAGCTAAGACGAGGAAAGCTGCAC 1195
||||||||||| | ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1156 TGACGTACAACACTTTGATCTTGGGACTATGCAAACAAGCTAAGACGAGGAAAGCTGCAC 1215
Query 1196 AGTTTGTTAAAGAACTCGACAAAGAGAATTTGGTGCCAAACTCGTCAACCTTTTCTGCGC 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1216 AGTTTGTTAAAGAACTCGACAAAGAGAATTTGGTGCCAAACTCGTCAACCTTCTCTGCGC 1275
Query 1256 TAATAATGGGACAATGCGTGAGGAAAAATGCAGACCGTGGTTTTGAACTGTACAAAAGCA 1315
| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1276 TGATAATGGGGCAATGCGTGAGGAGAAATGCAGACCGTGGTTTTGAACTGTACAAAAGCA 1335
Query 1316 TGATTAGGAGTGGTTGCCATCCGAATGAACAAACATTCAACATGCTGGTTTCTGCCTTCT 1375
|||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1336 TGATTAGGAGCGGTTGCCATCCGAATGAACAAACATTCAACATATTGATTTCTGCCTTCT 1395
Query 1376 GTAGGAATGAGGATTTTGATGGAGCATCTCAAGTGCTAAGGGAAATGGTCAGAAGATCAA 1435
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1396 GTAAGAATGAGGATTTTGATGGAGCAGCTCAAGTGCTAAGGGAAATGGTCAGAAGATCAA 1455
Query 1436 TTCCTCTTGATTCAAGGACTGTTCATCAGGTCTGCAATGGACTTAAGCATCAAGGGAAAG 1495
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1456 TTCCTCTAAATTCAAGGACTGTTCATCAGGTCTGCAATGGACTTAATCATCAAGGGAAAG 1515
Query 1496 ACCAACTTGTGAAAAAGTTGTTACAGGAGATGGAAGGGAAAAAGTTTCTACAAGAATCTT 1555
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1516 ACCAACTTGTGAAAGAGTTGTTACAGGAGATGGAAGGGAAAAAGTTTCTACAAGAACCTT 1575
Query 1556 TTA-ATAACTGAGAAGCAGAAGGTATTAACCaaaa 1589
| | ||||||||||||||||| |||||||||||||
Sbjct 1576 T-AGATAACTGAGAAGCAGAATGTATTAACCAAAA 1609
> Ahg492137 jgi|Araly1|492137|fgenesh2_kg.7__1570__AT4G26690.1
Length=2672
Score = 268 bits (145), Expect = 8e-71
Identities = 147/148 (99%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 1631 GTGTTTATAAAGGATACAGTCTCATAAATATTATAAGAGTATATGATACAACAACAAATG 1690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2672 GTGTTTATAAAGGATACAGTCTCATAAATATTATAAGAGTATATGATACAACAACAAATG 2613
Query 1691 AATATCTCAAATGAATCCGAGGGAAAGTCACACTCAAAGAATAACCTGTTGTTTTTTGGA 1750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2612 AATATCTCAAATGAATCCGAGGGAAAGTCACACTCAAAGAATAACCTGTTGTTTTTTGGA 2553
Query 1751 CAGAACTAGAATATAAGCAGACGACATG 1778
|||||||||||||||||||||| |||||
Sbjct 2552 CAGAACTAGAATATAAGCAGACAACATG 2525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66734109240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5