BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26710.1
Length=553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945390 jgi|Araly1|945390|scaffold_701619.1 475 1e-133
Ahg950185 jgi|Araly1|950185|scaffold_802072.1 215 3e-55
> Ahg945390 jgi|Araly1|945390|scaffold_701619.1
Length=408
Score = 475 bits (257), Expect = 1e-133
Identities = 359/403 (89%), Gaps = 28/403 (7%)
Strand=Plus/Plus
Query 57 TCTCA-TTGGGATCAGACATGGCTTTTGTTGTAACATCCCTGATATTCGCTGTCGTAGGC 115
||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 3 TCTCATTTGGGATCAGACATGGCTTTTCTTGTAACATCCCTAATATTCGCTGTCGTCGGC 62
Query 116 ATCATTGCTTCGATATGCACTAGAATCTGCTTCAACAAAGGCCCCTCCACCAATCTGTTA 175
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 ATCATTGCTTCAATCTGCACTAGAATCTGCTTCAACAAAGGCCCCTCCACCAATCTGTTA 122
Query 176 CATCTTACATTGGTCATCACCGCAACTGTCTGCTGTTGGATGATGTGGGCAATTGTATAC 235
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CATCTTACCTTGGTCATCACCGCAACTGTCTGCTGTTGGATGATGTGGGCAATTGTATAC 182
Query 236 ATTGCGCAGATGAACCCTCTCATTGTCCCTATCTTAAGCGAGGTGGAGTAGAAACCATTC 295
|||||||||||||| |||||||||||||||||| |||||||||| |||||||||| | ||
Sbjct 183 ATTGCGCAGATGAAGCCTCTCATTGTCCCTATCCTAAGCGAGGTAGAGTAGAAACTAATC 242
Query 296 TACTCAAACTAGGA---A---A----C-----C-A--A--T----GCACAAATTTGAGTA 331
||||||||| || | | | | | | | | |||||||||||||||
Sbjct 243 TACTCAAACAAGAACTCATCCATGTTCTTAAACTAGGAAATCAATGCACAAATTTGAGTA 302
Query 332 AGAGCCCCGCTGCTCTTTCTGTATCTTCTTCAAACATATTTGTTTTCCCCTTTGTAATTC 391
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AGAGCCCTGCTGCTCTTTCTGTATCTTCTTCAAACATATTTGTTTTCCCCTTTGTAATTC 362
Query 392 TTATCGT-GGTGTGGAACAAC-GAAACTATCCCCCTCTTTACT 432
||||| | ||||||||||||| |||||| | ||||||||||||
Sbjct 363 TTATC-TCGGTGTGGAACAACCGAAACTCTTCCCCTCTTTACT 404
> Ahg950185 jgi|Araly1|950185|scaffold_802072.1
Length=256
Score = 215 bits (116), Expect = 3e-55
Identities = 209/254 (82%), Gaps = 6/254 (2%)
Strand=Plus/Plus
Query 53 TCTCTCTC--ATTGGGATCAGACATGGCTTTTGTTGTAACATCCCTGATATTCGCT-GTC 109
|||||||| || |||||| |||||| ||| || ||||| |||| || |||| | |||
Sbjct 1 TCTCTCTCAGATCAGGATCAAACATGGGTTTCCTTATAACAACCCTAATCTTCG-TCGTC 59
Query 110 GTAGGCATCATTGCTTCGATATGCACTAGAATCTGCTTCAACAAAGGCCCCTCCACCAAT 169
|| || || |||||| | ||||| |||||||||||| ||||| ||| |||||||| |||
Sbjct 60 GTTGGGATTATTGCTGCCTTATGCGCTAGAATCTGCTGCAACAGAGGTCCCTCCACGAAT 119
Query 170 CTGTTACATCTTACATTGGTCATCACCGCAACTGTCTGCTGTTGGATGATGTGGGCAATT 229
||| |||||||||| |||||||| || || || |||||||||||||||||||||||||||
Sbjct 120 CTGCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATGTGGGCAATT 179
Query 230 GTATACATTGCGCAGATGAACCCTCTCATTGTCCCTATCTTAAGCGAGGTGGAGTAGAAA 289
||||| ||||| |||||||| ||||| |||||||| ||| ||||||| ||||||||
Sbjct 180 GTATATATTGCACAGATGAATCCTCTGATTGTCCCCATCCTAAGCGAAACAGAGTAGAAT 239
Query 290 CCA-T-TCTACTCA 301
|| | ||||||||
Sbjct 240 CCTCTCTCTACTCA 253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20184306581
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5