BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26720.1
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945389 jgi|Araly1|945389|scaffold_701618.1 1626 0.0
Ahg495612 jgi|Araly1|495612|fgenesh2_kg.8__1428__AT5G55260.1 1013 0.0
> Ahg945389 jgi|Araly1|945389|scaffold_701618.1
Length=958
Score = 1626 bits (880), Expect = 0.0
Identities = 932/958 (97%), Gaps = 0/958 (0%)
Strand=Plus/Plus
Query 169 AGAGGAGAGGAGAGGTAAAAATGTCAGACCTAGATCGGCAAATAGGGCAGCTTAAGCGAT 228
|||||||||||||||| ||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 1 AGAGGAGAGGAGAGGTGAAAATGTCAGACCTAGATCGGCAGATAGAGCAGCTGAAGCGAT 60
Query 229 GCGAACCATTGAGCGAATCGGAGGTGAAGGCTCTTTGCCTCAAAGCCATGGAAATTCTTG 288
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 61 GCGAACCATTGAGCGAATCGGAGGTGAAAGCTCTTTGTCTCAAAGCCATGGAAATTCTTG 120
Query 289 TTGAAGAGAGTAATGTTCAGAGAGTTGATGCCCCTGTCACTTTATGTGGTGACATCCATG 348
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TTGAAGAAAGTAATGTTCAAAGAGTTGACGCCCCTGTCACTTTATGTGGTGACATCCATG 180
Query 349 GGCAGTTCTATGATATGATGGAGCTTTTCAAAGTTGGGGGTGATTGTCCTAAGACCAACT 408
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGCAGTTCTATGACATGATGGAGCTTTTCAAAGTTGGGGGTGATTGTCCTAAGACCAACT 240
Query 409 ATTTGTTTATGGGAGATTTTGTTGATCGTGGATATTATTCGGTTGAGACATTTCTACTTC 468
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 ATTTGTTTATGGGAGACTTTGTTGATCGTGGATATTATTCAGTTGAGACATTTCTACTTC 300
Query 469 TACTCGCACTCAAGGTTAGATATCCAGACCGCATAACTCTCATCAGAGGAAACCATGAAA 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TACTCGCACTCAAGGTTAGATATCCAGACCGCATAACTCTCATCAGAGGAAACCATGAAA 360
Query 529 GCAGGCAAATCACACAGGTTTATGGATTTTATGATGAGTGTTTGCGTAAATATGGCTCTT 588
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCAGGCAGATCACACAGGTTTATGGATTTTATGATGAGTGTTTGCGTAAATATGGCTCTT 420
Query 589 CAAATGTCTGGAGATACTGCACCGACATTTTTGACTACATGAGTCTTTCAGCTGTTGTGG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 CAAATGTCTGGAGATACTGCACCGACATTTTTGACTACATGAGTCTTTCAGCTGTCGTGG 480
Query 649 AGAACAAGATATTCTGTGTTCATGGTGGTCTTTCTCCAGCTATTATGACTCTTGATCAGA 708
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 481 AGAACAAGATATTCTGTGTTCATGGTGGTCTCTCTCCAGCTATTACGACTCTTGATCAGA 540
Query 709 TTAGGACAATTGACCGGAAGCAAGAAGTACCACATGATGGTGCCATGTGTGATCTCCTAT 768
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 TTAGGACAATTGACCGGAAGCAAGAAGTACCACATGATGGTGCCATGTGTGACCTCCTAT 600
Query 769 GGTCTGATCCTGAAGATATTGTTGATGGCTGGGGATTGAGCCCTCGTGGTGCCGGATTCC 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGTCTGATCCTGAAGATATTGTTGATGGCTGGGGATTGAGCCCTCGTGGTGCCGGATTCC 660
Query 829 TTTTTGGTGGCAGTGTTGTCACGTCTTTTAACCACTCAAACAACATAGACTACATAGCCC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTTTGGTGGCAGTGTTGTCACGTCTTTTAACCACTCAAACAACATAGACTACATAGCCC 720
Query 889 GTGCCCATCAACTAGTTATGGAGGGTTACAAATGGATGTTTGATAGCCAGATTGTGACAG 948
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGCCCATCAACTAGTTATGGAGGGTTACAAATGGATGTTTGATAGCCAGATTGTGACAG 780
Query 949 TGTGGTCAGCCCCAAATTACTGTTACAGATGCGGTAATGTGGCTTCAATTCTAGAGCTTG 1008
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 781 TGTGGTCAGCCCCGAATTACTGTTACAGATGCGGTAATGTGGCTTCGATTCTAGAGCTCG 840
Query 1009 ACGAGAATCTAAATAAAGAATTCCGTGTGTTTGATGCAGCCCAGCAGGACTCGAGAGGGC 1068
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 ACGAGAATCTAAATAAAGAATTCCGTGTGTTCGATGCAGCCCAGCAGGACTCGAGAGGGC 900
Query 1069 CTCCCGCCAAAAAGCCGGCCCCTGATTACTTCCTATAATGGGCAAAACTTCGAAAACC 1126
|||| |||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 CTCCTGCCAAAAAACCTGCCCCTGATTACTTCCTATAATGGACAAAACTTCGAAAACC 958
> Ahg495612 jgi|Araly1|495612|fgenesh2_kg.8__1428__AT5G55260.1
Length=1171
Score = 1013 bits (548), Expect = 0.0
Identities = 801/924 (87%), Gaps = 14/924 (2%)
Strand=Plus/Plus
Query 186 AAAATGTCAGACCTAGATCGGCAAATAGGGCAGCTTAAGCGATGCGAACCATTG-AGCGA 244
|||||||||||| |||| | |||||||| |||||| || || ||||| || ||| || ||
Sbjct 161 AAAATGTCAGACATAGACCAGCAAATAGAGCAGCTAAAACGCTGCGAGCCTTTGAAG-GA 219
Query 245 ATCGGAGGTGAAGGCTCTTTGCCTCAAAGCCATGGAAATTCTTGTTGAAGAGAGTAATGT 304
||| || ||||| |||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 220 ATCAGAAGTGAAAGCTCTTTGTCTCAAAGCCATGGAAATTCTAGTTGAAGAGAGCAATGT 279
Query 305 TCAGAGAGTTGATGCCCCTGTCACTTTATGTGGTGACATCCATGGGCAGTTCTATGATAT 364
||| ||||| ||||| ||||||||| ||||||| ||||| ||||||||||||||||| ||
Sbjct 280 TCAAAGAGTCGATGCTCCTGTCACTATATGTGGCGACATTCATGGGCAGTTCTATGACAT 339
Query 365 GATGGAGCTTTTCAAAGTTGGGGGTGATTGTCCTAAGACCAA-CTATTTGTTTATGGGAG 423
|| |||||||||||||| || |||||||| ||||||| ||| ||||||||| | ||||
Sbjct 340 GAAAGAGCTTTTCAAAGTCGGCGGTGATTGCCCTAAGA-CAAGTTATTTGTTTCTTGGAG 398
Query 424 ATTTTGTTGATCGTGGATATTATTCGGTTGAGACATTTCTACTTCTACTCGCACTCAAGG 483
|||||||||| || || | |||||| |||||||||||||||||||| || || |||||||
Sbjct 399 ATTTTGTTGACCGAGGTTTTTATTCAGTTGAGACATTTCTACTTCTTCTAGCTCTCAAGG 458
Query 484 TTAGATATCCAGACCGCATAACTCTCATCAGAGGAAACCATGAAAGCAGGCAAATCACAC 543
|||||||||||||||| ||||||||||| ||||| ||||| || ||| |||| || || |
Sbjct 459 TTAGATATCCAGACCGTATAACTCTCATTAGAGGGAACCACGAGAGCCGGCAGATTACGC 518
Query 544 AGGTTTATGGATTTTATGATGAGTGTTTGCGTAAATATGGCTCT-TCAAATGTCTGGAGA 602
|||| ||||| |||||||||||||| | ||||||||||||||| | |||||| ||||||
Sbjct 519 AGGTATATGGTTTTTATGATGAGTGCCTACGTAAATATGGCTCTGT-AAATGTTTGGAGA 577
Query 603 TACTGCACCGACATTTTTGACTACATGAGTCTTTCAGCTGTTGTGGAGAACAAGATATTC 662
|| ||||| || || ||||||||| |||||||||||||| |||| ||||||||||||||
Sbjct 578 TATTGCACAGATATCTTTGACTACTTGAGTCTTTCAGCTCTTGTCGAGAACAAGATATTT 637
Query 663 TGTGTTCATGGTGGTCTTTCTCCAGCTATTATGACTCTTGATCAGATTAGGACAATTGAC 722
||||||||||| ||||| |||||||||||||||||||| || ||||| ||| | |||||
Sbjct 638 TGTGTTCATGGAGGTCTCTCTCCAGCTATTATGACTCTAGACCAGATCAGGGCTATTGAT 697
Query 723 CGGAAGCAAGAAGTACCACATGATGGTGCCATGTGTGATCTCCTATGGTCTGATCCTGAA 782
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 698 CGAAAGCAAGAAGTACCACATGATGGTGCCATGTGTGATCTTTTATGGTCTGATCCAGAA 757
Query 783 GATATTGTTGATGGCTGGGGATTGAGCCCTCGTGGTGCCGGATTCCTTTTTGGTGGCAGT 842
|||||||| ||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 758 GATATTGTCGATGGCTGGGGATTGAGTCCACGTGGTGCCGGATTCCTTTTCGGTGGCAGT 817
Query 843 GTTGTCACGTCTTTTAACCACTCAAACAACATAGACTACATA-GCCCGTGCCCATCAACT 901
||||| |||||||||||||||||||||||||| || |||||| | | | || ||||| ||
Sbjct 818 GTTGTTACGTCTTTTAACCACTCAAACAACATTGATTACATATGTC-GAGCTCATCAGCT 876
Query 902 AGTTATGGAGGGTTACAAATGGATGTTTGATAGCCAGATTGTGACAGTGTGGTCAGCCCC 961
||||||||| ||||||||||||||||| |||||||||| || || || ||||| |||||
Sbjct 877 AGTTATGGAAGGTTACAAATGGATGTTCAATAGCCAGATAGTCACTGTTTGGTCTGCCCC 936
Query 962 AAATTACTGTTACAGATGCGGTAATGTGGCTTCAATTCTAGAGCTTGACGAGAATCTAAA 1021
|||||||||||| |||||||||||||| ||| ||||||||||||| || |||||||||||
Sbjct 937 AAATTACTGTTATAGATGCGGTAATGTTGCTGCAATTCTAGAGCTCGATGAGAATCTAAA 996
Query 1022 TAAAGAATTCCGTGTGTTTGATGCAGCCC-AGCAGGACTCGAGAGG-GCCTCCCGCCAA- 1078
||| || || ||||| || |||||||||| | || || |||||||| || || |||||
Sbjct 997 TAAGGAGTTTCGTGTCTTCGATGCAGCCCCA-CAAGAATCGAGAGGAGC-TCTAGCCAAG 1054
Query 1079 AAAGCCGGCCCCTGATTACTTCCT 1102
||| || || |||||||| |||||
Sbjct 1055 AAA-CCTGCACCTGATTATTTCCT 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55040404025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5