BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26740.1
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329010 jgi|Araly1|329010|fgenesh1_pm.C_scaffold_7001237 1236 0.0
Ahg495609 jgi|Araly1|495609|fgenesh2_kg.8__1425__AT5G55240.1 549 1e-155
> Ahg329010 jgi|Araly1|329010|fgenesh1_pm.C_scaffold_7001237
Length=738
Score = 1236 bits (669), Expect = 0.0
Identities = 715/738 (97%), Gaps = 0/738 (0%)
Strand=Plus/Plus
Query 51 atggggtcaaagacggagatgatggagagagaCGCAATGGCTACGGTGGCTCCCTATGCG 110
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGCTCGAAGACGGAGATAATGGAGAGAGACGCAATGGCTACGGTGGCTCCCTATGCG 60
Query 111 CCGGTCACTTACCATCGCCGTGCTCGTGTTGACTTGGATGATAGACTTCCTAAACCTTAT 170
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CCGGTCACTTACCATCGCCGTGCTCGCGTTGACTTGGATGATAGACTTCCTAAACCTTAT 120
Query 171 ATGCCAAGAGCATTGCAAGCACCAGACAGAGAACACCCGTACGGAACTCCAGGCCATAAG 230
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 121 ATGCCAAGAGCATTGCAAGCACCAGACAGAGAACATCCGTACGGAACCCCAGGCCATAAG 180
Query 231 AATTACGGACTTAGTGTTCTTCAACAGCATGTCTCCTTCTTCGATATCGATGATAATGGC 290
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AATTACGGACTTAGTGTTCTTCAACAGCATGTCTCCTTCTTCGATATGGATGATAATGGC 240
Query 291 ATCATTTACCCTTGGGAGACCTACTCTGGACTGCGAATGCTTGGTTTCAATATCATTGGG 350
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCATCTACCCTTGGGAGACCTACTCTGGACTGCGAATGCTTGGTTTCAATATCATTGGC 300
Query 351 TCGCTTATAATAGCCGCTGTTATCAACCTGACCCTTAGCTATGCCACTCTTCCGGGGTGG 410
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 TCGCTTATAATAGCAGCTGTTATCAACCTGACCCTTAGCTATGCTACTCTTCCGGGGTGG 360
Query 411 TTACCTTCACCTTTCTTCCCTATATACATACACAACATACACAAGTCAAAGCATGGAAGT 470
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 TTACCTTCACCTTTCTTCCCTATATACATACACAACATACACAAGTCCAAGCATGGAAGC 420
Query 471 GATTCAAAAACATATGACAATGAAGGAAGGTTTATGCCGGTGAATCTTGAGTTGATATTT 530
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GACTCAAAAACATATGACAATGAAGGGAGGTTTATGCCGGTGAATCTTGAGTTGATATTT 480
Query 531 AGCAAATATGCGAAAACCTTGCCAGACAAGTTGAGTCTTGGAGAACTATGGGAGATGACA 590
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AGCAAATATGCGAAAACCTTGCCAGATAAGTTGAGTCTTGGAGAACTATGGGAGATGACA 540
Query 591 GAAGGAAACCGTGACGCTTGGGACATTTTTGGATGGATCGCAGGCAAAATAGAGTGGGGA 650
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 GAAGGAAACCGTGACGCTTGGGACATTTTCGGATGGATCGCAGGCAAAATAGAGTGGGGA 600
Query 651 CTGTTGTACTTGCTAGCAAGGGATGAAGAAGGGTTTTTGTCAAAAGAAGCTATTAGGCGG 710
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 CTCTTGTACTTGCTAGCAAGGGATGAAGAAGGGTTTTTGTCAAAAGAAGCGATTAGGCGG 660
Query 711 TGTTTCGATGGAAGCTTGTTCGAGTACTGTGCCAAAATCTACGCTGGTATCAGTGAAGAC 770
||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 661 TGTTTCGATGGAAGCTTGTTCGAGTACTGCGCCAAGATCTACGCCGGTATCAGTGAAGAC 720
Query 771 AAGACAGCATACTACTAA 788
|||||||| |||||||||
Sbjct 721 AAGACAGCCTACTACTAA 738
> Ahg495609 jgi|Araly1|495609|fgenesh2_kg.8__1425__AT5G55240.1
Length=737
Score = 549 bits (297), Expect = 1e-155
Identities = 595/736 (81%), Gaps = 31/736 (4%)
Strand=Plus/Plus
Query 65 ggagatgatggagagagaCGCAATGGCTACGGTGGCTCCCTATGCGCCGGTCACTTACCA 124
||||| ||||||| |||||||||||| || ||||||||||| || ||||| ||||| ||
Sbjct 14 GGAGAGGATGGAGTGAGACGCAATGGAGACAGTGGCTCCCTACGCTCCGGTGACTTATCA 73
Query 125 TCGCCGTGCTCGTGTTGACTTGGATGATAGACTTCCTAAACCTTATATGCCAAGAGCA-T 183
||||||| ||||| | ||||||| || | |||||||||||||||| |||| |||||| |
Sbjct 74 CCGCCGTGTTCGTGGTAACTTGGACGACACACTTCCTAAACCTTATTTGCCGAGAGCACT 133
Query 184 TGCAAGCACCAGACA-GAGAACACCCGTACGGAACTCCAG-GCCATAAGAATTACGGACT 241
| |||||||| |||| | || |||||| | ||||| |||| | |||| | || | || ||
Sbjct 134 T-CAAGCACCTGACATG-GAGCACCCGCAAGGAACACCAGAG-CATAGGCATAATGGCCT 190
Query 242 TAGTGTTCTTCAACAGCATGTCTCCTTCTTCGATATCGATGATAATGGCATCATTTA-CC 300
||||||||||| || |||||| | ||||| ||| | |||||||||||||| ||||| ||
Sbjct 191 AAGTGTTCTTCAGCAACATGTCGCTTTCTTTGATTTGGATGATAATGGCATTATTTATCC 250
Query 301 CTTGGGAGACCTACTCTGGACTGCGAATGCTTGGTTTCAATATCA-TTGGGTCGCTTATA 359
||| || |||| | ||||| | || | |||||||||||| | | | | ||||||| |
Sbjct 251 CTT-TGAAACCTTCACTGGATTCCGGTTACTTGGTTTCAAT-TTACTAGCGTCGCTTGTC 308
Query 360 ATAGCCGCTGTTATCAACCTGA-CCCTTAGCTATGCCACTCTTCCGGGGTGGTTACCTTC 418
| || |||| ||||||| | | | ||||||||||| ||||| ||||| |||||||| ||
Sbjct 309 TTGGCTGCTGGTATCAACAT-AGCTCTTAGCTATGCTACTCTCCCGGGATGGTTACCGTC 367
Query 419 ACCTTTCTTCCCTATATACATACACAACATACACAAGTCAAAGCATGGAAGTGATTCAAA 478
|| || || |||||||| ||||||||||| |||||| |||| || |||||||| || ||
Sbjct 368 TCCGTTATTTCCTATATATATACACAACATTCACAAGGCAAAACACGGAAGTGACTCTAA 427
Query 479 AACATATGACAATGAAGGAAGGTTTATGCCGGTGAATCTTGAGTTGATATTTAGCAAATA 538
||| ||||||||||||||||||| || || | ||||||||||||||| |||||||||||
Sbjct 428 AACGTATGACAATGAAGGAAGGTATACACCAGCGAATCTTGAGTTGATGTTTAGCAAATA 487
Query 539 TGCGAAAACCTTGCCAGACAAGTTGAGTCTTGGAGAACTATGGGAGATGACAGAAGGAAA 598
|||| ||| || ||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 488 CGCGAGGACCGTGTCAGACAAGTTGAGTCTTGGAGAACTATGGGACATGACCGAAGGGAA 547
Query 599 CCGTGACGC-TTGGGACATTTTTGGATGGATCGC-AGGCAAAATAGAGTGGGGACTGTTG 656
||| || || || | || ||||||||||| | || || ||| | || |||||| |||||
Sbjct 548 CCGCGATGCCTTTG-ACTTTTTTGGATGGTTAGCGAG-CAAGGTGGAATGGGGAGTGTTG 605
Query 657 TACTTGC-T-AGCAAGGGATGAAGAAGGGTTTTTGTCAAAAGAAGCTATTAGGCGGTGTT 714
|| | || | ||| || || |||||||| || ||||| |||||||| || |||||||| |
Sbjct 606 TA-T-GCGTTAGCGAGTGACGAAGAAGGATTCTTGTCTAAAGAAGCCATAAGGCGGTGCT 663
Query 715 TCGATGGAAGCTTGTTCGAGTACTGTGCCAA-AATCTACGCTG-GTATCA-GTGAAG-AC 770
| |||||||||||||||||||| ||||| || || |||||||| | |||| | || | ||
Sbjct 664 TAGATGGAAGCTTGTTCGAGTATTGTGCGAAGAA-CTACGCTGAG-ATCAAG-GA-GTAC 719
Query 771 AAGACAGCATACTACT 786
||||| | |||||||
Sbjct 720 AAGAC-G--TACTACT 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39571587846
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5