BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G26770.1 Length=1741 Score E Sequences producing significant alignments: (Bits) Value Ahg492125 jgi|Araly1|492125|fgenesh2_kg.7__1558__AT4G26770.1 2706 0.0 > Ahg492125 jgi|Araly1|492125|fgenesh2_kg.7__1558__AT4G26770.1 Length=1697 Score = 2706 bits (1465), Expect = 0.0 Identities = 1634/1714 (95%), Gaps = 18/1714 (1%) Strand=Plus/Plus Query 1 ATGAAACCTCACCGCTAAGTGCTCATCCACCAccttcctcctcctccttcttccctcacc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 ATGAAACCTCACCGCTAAGTGCTCATCCACCACCTTCCTCCTCCTCCTTCTTACCTCACC 60 Query 61 ttttgagtttctttcttcacgtttcttttcATTAATTAGGGTTTCGCATTTTCAATCACC 120 ||||||| | || | |||| || ||||||||||||||||||||||||||| Sbjct 61 TTTTGAG------T-TT--C-TTTC---TC--TAATTAGGGTTTCGCATTTTCAATCACT 105 Query 121 ATCATCCCACCACGTTTTCGTTAATGAACTGAGAGCATTTCCTAGGGATCTCAATGGCAA 180 |||||||| |||| | ||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 106 ATCATCCCGCCACATATTCGTTAATGAACTGAGAGCATTTCTTAGGGATCTCGATGGCAA 165 Query 181 TGGAGAAAGATCTCAGTCCAAATTCTCCACGGATTAGAAAGCTAAGGGATACTAGTTACC 240 ||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| | Sbjct 166 TGGAGAAAGATCTCAATCCGAATTCTCCACGGATTAGAAAGCTAAGGGATAATAGTTATC 225 Query 241 CTACTACACCAACGTCTCGAATGAATACTAATAACCAGAGAGATAACCATTATCCCAACA 300 |||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| Sbjct 226 CTACTACACCAACGTCTCGAATGAGTAGTAATAACCAAAGAGATAACCATTATCCCAACA 285 Query 301 TTCCTAATTCACCAAGGGATTACAATTATACTCCTAGCTCTCCAACAGCTCGCATTCGAC 360 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 286 TTCCTAATTCACCAAGGGATTACAATTATACTCCTAGCTCTCCAACAGCCCGCATTCGAC 345 Query 361 ACCGCAGGCGATCAAGCGAGAATTTAGCTGAGGTGAACAGAAGCAATGTAAGCAGAGTAA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 346 ACCGCAGGCGATCAAGCGAGAATTTAGCTGAGGTGAACAGAAGCAATGTAAGCAGAGTAA 405 Query 421 GCAATTTGTTACTTGGTGATAAGAACAAGTACAGATCAATGTGGATAAGGACATGCTCAT 480 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 406 GCAATTTGTTGCTTGGTGATAAGAACAAGTACAGATCCATGTGGATAAGGACATGCTCAT 465 Query 481 CTCTCTGGATGCTCGGTGGAGTTGTGTTTATAATCTACATGGGTCATCTCTACATTTGGG 540 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 466 CTCTGTGGATGCTCGGTGGAGTTGTCTTTATAATCTACATGGGTCATCTCTACATTTGGG 525 Query 541 CTATGGTTGTGGTTATACAGATATTCATGGCCAAAGAGCTCTTCTTTCTTCGCAGAAGAG 600 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 526 CTATGGTTGTGGTTATACAGATATTCATGGCTAAAGAGCTCTTCTTTCTTCGTAGAAGAG 585 Query 601 CTCATGAAGAACGTCGCTTACCCGGTTTCTGGCTCTTGAATTGGCACTTCTTCTTCACGG 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 586 CTCATGAAGAACGTCGCTTACCCGGTTTCTGGCTCTTGAATTGGCACTTCTTCTTCACCG 645 Query 661 CTATGTTGTTTGTCTATGGACGCATCATTCAACAGCAGCTAGTCAACACGGTTTCTTCAG 720 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 646 CTATGTTGTTTGTATATGGACGTATCATTCAACAGCAGCTAGTCAACACGGTTTCTTCAG 705 Query 721 ATAGATTCATATACAAGCTTGTGAGTGGTCTTATCAAGTACCAGATGGTTATTTGCTACT 780 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 ACAGATTCATCTACAAGCTTGTGAGTGGTCTTATCAAGTACCAGATGGTTATTTGCTACT 765 Query 781 TCTTGTACATCGCAGGTCTCATATGGTTTATCCTTACATTGAAGAATAAGATGTATAAGT 840 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 766 TCCTGTACATCGCAGGTCTCATATGGTTTATCCTTACATTGAAGAATAAGATGTATAAGT 825 Query 841 ATCAGTTTGGGCAATACGCTTGGACACATATGATCCTTATCGTTGTCTTTACTCAATCTT 900 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 826 ATCAGTTTGGGCAATACGCTTGGACACATATGATCCTTATCATCGTCTTTACTCAATCTT 885 Query 901 CTTTCACCGTCGCCAATATTTTTGAAGGGATCTTCTGGTTTCTTCTACCAGCAGCACTGA 960 |||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| Sbjct 886 CTTTCACCGTCGCCAATATTTTCGAAGGGATCTTCTGGTTTCTACTGCCAGCAGCACTGA 945 Query 961 TTGCTATGAACGATGTAGCAGCTTACTTCTTCGGTTTCTATTTCGGGAAAACTCCGCTCA 1020 |||||||||| |||||||| ||||| |||||||| |||||||||||||||||||| |||| Sbjct 946 TTGCTATGAATGATGTAGCGGCTTATTTCTTCGGCTTCTATTTCGGGAAAACTCCACTCA 1005 Query 1021 TCAAGTTGTCTCCAAAGAAAACATGGGAAGGTTTCATCGGAGCATCAGTTGCAACTATAA 1080 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1006 TCAAGTTGTCTCCAAAGAAAACATGGGAAGGTTTCATTGGAGCATCAGTTGCAACTATAA 1065 Query 1081 TCTCTGCATTTATTTTTGCTAATGTCTTAGGCCAGTTCCAATGGCTTACATGTCCAAGGA 1140 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| | Sbjct 1066 TCTCTGCATTTATTTTTGGTAATGTCTTAGGCCAGTTCCAGTGGCTTACATGTCCAAGAA 1125 Query 1141 AGGATTTATCAACTGGTTGGCTTCATTGTGATCCAGGCCCTCTCTTCAGGCCAGAGTATT 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1126 AGGATTTATCAACTGGTTGGCTTCATTGTGATCCAGGCCCTCTCTTCAGGCCCGAGTATT 1185 Query 1201 ACCCATTTCCCTCTTGGATTACTCCATTTTCTCCATGGAAAGGGATCTCGACCCTGCCTG 1260 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1186 ACCCATTGCCCTCTTGGATTGCTCCATTTTCTCCATGGAAAGGGATCTCGACCCTGCCTG 1245 Query 1261 TCCAATGGCATGCTTTTTCTCTCGGTCTATTCGCATCCATTATGGCGCCTTTTGGTGGCT 1320 |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 1246 TCCAATGGCATGCTTTCTCTCTCGGTCTGTTCGCATCCATTATGGCACCTTTTGGTGGTT 1305 Query 1321 TCTTCGCAAGCGGTTTCAAAAGAGCTTTCAAGATCAAGGATTTCGGAGACAGCATACCAG 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1306 TCTTCGCAAGCGGTTTCAAAAGAGCTTTCAAGATCAAGGATTTCGGAGACAGCATACCAG 1365 Query 1381 GACATGGAGGATTTACTGACAGAATGGATTGCCAAATGGTTATGGCGGTTTTCGCATACA 1440 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1366 GACATGGAGGATTTACTGATAGAATGGATTGCCAAATGGTTATGGCGGTTTTCGCATACA 1425 Query 1441 TCTACATCCAATCTTTCATTGTTAATCGGGACTACAGTGTCGAGATGATCCTAGACCAGA 1500 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1426 TCTACATCCAATCATTCATTGTTAATCAGGACTACAGTGTCGAGATGATCCTAGACCAGA 1485 Query 1501 TATCGAGGAGCCTGGGACACGAGGAGCAGAAAATGCTTTATGAAAAGCTCGGAGACATTC 1560 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1486 TATCGAGGAGCCTGGGACACGAGGAGCAGAAAATGCTTTATGTAAAGCTCGGAGATATTC 1545 Query 1561 TTCAACATAAGTTGCAAGGG-AGGTTTTAAATAGTGAGTGCAAGTTTTGTGACTCTGTTT 1619 |||||||||||||||| ||| |||||||||| |||||||||||||| ||||||||||||| Sbjct 1546 TTCAACATAAGTTGCA-GGGCAGGTTTTAAAAAGTGAGTGCAAGTTGTGTGACTCTGTTT 1604 Query 1620 TCAGCTTCTTTCTCTATGGTTAGTTTCTGGTTGTATCAGACCATGTAAAACCTTGATTTG 1679 |||||||||||| ||||||||||||||||| || |||||||||| |||||| || ||||| Sbjct 1605 TCAGCTTCTTTCCCTATGGTTAGTTTCTGGCTGCATCAGACCATCTAAAACTTTAATTTG 1664 Query 1680 TATCTGATTTAACTAATCAAACAGAGACTTGGTA 1713 ||||||||| || ||||||||||||||||||||| Sbjct 1665 TATCTGATT-AATTAATCAAACAGAGACTTGGTA 1697 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65324770175 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5