BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26770.1
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492125 jgi|Araly1|492125|fgenesh2_kg.7__1558__AT4G26770.1 2706 0.0
> Ahg492125 jgi|Araly1|492125|fgenesh2_kg.7__1558__AT4G26770.1
Length=1697
Score = 2706 bits (1465), Expect = 0.0
Identities = 1634/1714 (95%), Gaps = 18/1714 (1%)
Strand=Plus/Plus
Query 1 ATGAAACCTCACCGCTAAGTGCTCATCCACCAccttcctcctcctccttcttccctcacc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGAAACCTCACCGCTAAGTGCTCATCCACCACCTTCCTCCTCCTCCTTCTTACCTCACC 60
Query 61 ttttgagtttctttcttcacgtttcttttcATTAATTAGGGTTTCGCATTTTCAATCACC 120
||||||| | || | |||| || |||||||||||||||||||||||||||
Sbjct 61 TTTTGAG------T-TT--C-TTTC---TC--TAATTAGGGTTTCGCATTTTCAATCACT 105
Query 121 ATCATCCCACCACGTTTTCGTTAATGAACTGAGAGCATTTCCTAGGGATCTCAATGGCAA 180
|||||||| |||| | ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 106 ATCATCCCGCCACATATTCGTTAATGAACTGAGAGCATTTCTTAGGGATCTCGATGGCAA 165
Query 181 TGGAGAAAGATCTCAGTCCAAATTCTCCACGGATTAGAAAGCTAAGGGATACTAGTTACC 240
||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| |
Sbjct 166 TGGAGAAAGATCTCAATCCGAATTCTCCACGGATTAGAAAGCTAAGGGATAATAGTTATC 225
Query 241 CTACTACACCAACGTCTCGAATGAATACTAATAACCAGAGAGATAACCATTATCCCAACA 300
|||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 226 CTACTACACCAACGTCTCGAATGAGTAGTAATAACCAAAGAGATAACCATTATCCCAACA 285
Query 301 TTCCTAATTCACCAAGGGATTACAATTATACTCCTAGCTCTCCAACAGCTCGCATTCGAC 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 286 TTCCTAATTCACCAAGGGATTACAATTATACTCCTAGCTCTCCAACAGCCCGCATTCGAC 345
Query 361 ACCGCAGGCGATCAAGCGAGAATTTAGCTGAGGTGAACAGAAGCAATGTAAGCAGAGTAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 ACCGCAGGCGATCAAGCGAGAATTTAGCTGAGGTGAACAGAAGCAATGTAAGCAGAGTAA 405
Query 421 GCAATTTGTTACTTGGTGATAAGAACAAGTACAGATCAATGTGGATAAGGACATGCTCAT 480
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 406 GCAATTTGTTGCTTGGTGATAAGAACAAGTACAGATCCATGTGGATAAGGACATGCTCAT 465
Query 481 CTCTCTGGATGCTCGGTGGAGTTGTGTTTATAATCTACATGGGTCATCTCTACATTTGGG 540
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 466 CTCTGTGGATGCTCGGTGGAGTTGTCTTTATAATCTACATGGGTCATCTCTACATTTGGG 525
Query 541 CTATGGTTGTGGTTATACAGATATTCATGGCCAAAGAGCTCTTCTTTCTTCGCAGAAGAG 600
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 526 CTATGGTTGTGGTTATACAGATATTCATGGCTAAAGAGCTCTTCTTTCTTCGTAGAAGAG 585
Query 601 CTCATGAAGAACGTCGCTTACCCGGTTTCTGGCTCTTGAATTGGCACTTCTTCTTCACGG 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 586 CTCATGAAGAACGTCGCTTACCCGGTTTCTGGCTCTTGAATTGGCACTTCTTCTTCACCG 645
Query 661 CTATGTTGTTTGTCTATGGACGCATCATTCAACAGCAGCTAGTCAACACGGTTTCTTCAG 720
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 646 CTATGTTGTTTGTATATGGACGTATCATTCAACAGCAGCTAGTCAACACGGTTTCTTCAG 705
Query 721 ATAGATTCATATACAAGCTTGTGAGTGGTCTTATCAAGTACCAGATGGTTATTTGCTACT 780
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 ACAGATTCATCTACAAGCTTGTGAGTGGTCTTATCAAGTACCAGATGGTTATTTGCTACT 765
Query 781 TCTTGTACATCGCAGGTCTCATATGGTTTATCCTTACATTGAAGAATAAGATGTATAAGT 840
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 TCCTGTACATCGCAGGTCTCATATGGTTTATCCTTACATTGAAGAATAAGATGTATAAGT 825
Query 841 ATCAGTTTGGGCAATACGCTTGGACACATATGATCCTTATCGTTGTCTTTACTCAATCTT 900
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 826 ATCAGTTTGGGCAATACGCTTGGACACATATGATCCTTATCATCGTCTTTACTCAATCTT 885
Query 901 CTTTCACCGTCGCCAATATTTTTGAAGGGATCTTCTGGTTTCTTCTACCAGCAGCACTGA 960
|||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 886 CTTTCACCGTCGCCAATATTTTCGAAGGGATCTTCTGGTTTCTACTGCCAGCAGCACTGA 945
Query 961 TTGCTATGAACGATGTAGCAGCTTACTTCTTCGGTTTCTATTTCGGGAAAACTCCGCTCA 1020
|||||||||| |||||||| ||||| |||||||| |||||||||||||||||||| ||||
Sbjct 946 TTGCTATGAATGATGTAGCGGCTTATTTCTTCGGCTTCTATTTCGGGAAAACTCCACTCA 1005
Query 1021 TCAAGTTGTCTCCAAAGAAAACATGGGAAGGTTTCATCGGAGCATCAGTTGCAACTATAA 1080
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1006 TCAAGTTGTCTCCAAAGAAAACATGGGAAGGTTTCATTGGAGCATCAGTTGCAACTATAA 1065
Query 1081 TCTCTGCATTTATTTTTGCTAATGTCTTAGGCCAGTTCCAATGGCTTACATGTCCAAGGA 1140
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1066 TCTCTGCATTTATTTTTGGTAATGTCTTAGGCCAGTTCCAGTGGCTTACATGTCCAAGAA 1125
Query 1141 AGGATTTATCAACTGGTTGGCTTCATTGTGATCCAGGCCCTCTCTTCAGGCCAGAGTATT 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1126 AGGATTTATCAACTGGTTGGCTTCATTGTGATCCAGGCCCTCTCTTCAGGCCCGAGTATT 1185
Query 1201 ACCCATTTCCCTCTTGGATTACTCCATTTTCTCCATGGAAAGGGATCTCGACCCTGCCTG 1260
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1186 ACCCATTGCCCTCTTGGATTGCTCCATTTTCTCCATGGAAAGGGATCTCGACCCTGCCTG 1245
Query 1261 TCCAATGGCATGCTTTTTCTCTCGGTCTATTCGCATCCATTATGGCGCCTTTTGGTGGCT 1320
|||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1246 TCCAATGGCATGCTTTCTCTCTCGGTCTGTTCGCATCCATTATGGCACCTTTTGGTGGTT 1305
Query 1321 TCTTCGCAAGCGGTTTCAAAAGAGCTTTCAAGATCAAGGATTTCGGAGACAGCATACCAG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 TCTTCGCAAGCGGTTTCAAAAGAGCTTTCAAGATCAAGGATTTCGGAGACAGCATACCAG 1365
Query 1381 GACATGGAGGATTTACTGACAGAATGGATTGCCAAATGGTTATGGCGGTTTTCGCATACA 1440
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GACATGGAGGATTTACTGATAGAATGGATTGCCAAATGGTTATGGCGGTTTTCGCATACA 1425
Query 1441 TCTACATCCAATCTTTCATTGTTAATCGGGACTACAGTGTCGAGATGATCCTAGACCAGA 1500
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1426 TCTACATCCAATCATTCATTGTTAATCAGGACTACAGTGTCGAGATGATCCTAGACCAGA 1485
Query 1501 TATCGAGGAGCCTGGGACACGAGGAGCAGAAAATGCTTTATGAAAAGCTCGGAGACATTC 1560
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1486 TATCGAGGAGCCTGGGACACGAGGAGCAGAAAATGCTTTATGTAAAGCTCGGAGATATTC 1545
Query 1561 TTCAACATAAGTTGCAAGGG-AGGTTTTAAATAGTGAGTGCAAGTTTTGTGACTCTGTTT 1619
|||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 1546 TTCAACATAAGTTGCA-GGGCAGGTTTTAAAAAGTGAGTGCAAGTTGTGTGACTCTGTTT 1604
Query 1620 TCAGCTTCTTTCTCTATGGTTAGTTTCTGGTTGTATCAGACCATGTAAAACCTTGATTTG 1679
|||||||||||| ||||||||||||||||| || |||||||||| |||||| || |||||
Sbjct 1605 TCAGCTTCTTTCCCTATGGTTAGTTTCTGGCTGCATCAGACCATCTAAAACTTTAATTTG 1664
Query 1680 TATCTGATTTAACTAATCAAACAGAGACTTGGTA 1713
||||||||| || |||||||||||||||||||||
Sbjct 1665 TATCTGATT-AATTAATCAAACAGAGACTTGGTA 1697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65324770175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5