BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26780.1
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492124 jgi|Araly1|492124|fgenesh2_kg.7__1557__AT4G26780.1 1801 0.0
Ahg495605 jgi|Araly1|495605|fgenesh2_kg.8__1421__AT5G55200.1 501 6e-141
> Ahg492124 jgi|Araly1|492124|fgenesh2_kg.7__1557__AT4G26780.1
Length=1206
Score = 1801 bits (975), Expect = 0.0
Identities = 1140/1217 (94%), Gaps = 21/1217 (2%)
Strand=Plus/Plus
Query 212 ATGTTGGTTTTGAGAATTTTGTCGCGAGTAACCCGCAACGCGGGCATACGCTCATCTCTA 271
|||||||||| ||||||||| |||||||||||||| ||||||||| ||||||| | |||
Sbjct 1 ATGTTGGTTTCGAGAATTTTATCGCGAGTAACCCGTAACGCGGGCTTACGCTCCTATCTC 60
Query 272 TCCGCCGTCACTCTTCCGGCGAGGAATCAGACTCCTGTTTTCTCGAGCCGGTTTCACTCC 331
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 61 TCCGCCGTCACTCTTCCGGCGAGTAATCAGACTCCTGTTTTCTCGAGCCGCTTTCACTCC 120
Query 332 CTAGCTCACG-ATTTCTCGCATAAGCTTGTTCCAGCTCAGATGTCTATGATGGATTCGTT 390
| | ||||| |||| |||||||||||||||||||||||| |||| | ||||||||| |
Sbjct 121 CGCGATCACGAATTT-TCGCATAAGCTTGTTCCAGCTCAGGTGTC--T-ATGGATTCGGT 176
Query 391 TGCACTGCAAAGGTTCAATTTTTCTTCCTCTACCTCGCCTGAATCAGATGAGAAGAAGAC 450
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 177 TGCACTGCAAAGGTTCTCCTTTTCTTCGACTACCTCGCCTGAATCAGATGAGAAGAAGAG 236
Query 451 CCACACTGAGGCCTCAAAGACAAGTGAAGAGAAACCTACAGCTGAGGCAAACCAACCAGG 510
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CAACACTGAGGCCTCAAGGACAAGTGAAGAGAAACCTACAGCTGAGGCAAACCAACCAGG 296
Query 511 TCTTGACTCTGAATCTAAAGATTCTGTGACAGATTCTGCAAAAAGAAAGCGGAAAGGTGC 570
||||||| |||||||||||||||||| ||| |||||||| ||||||||| ||||||||||
Sbjct 297 TCTTGACACTGAATCTAAAGATTCTGGGACCGATTCTGCGAAAAGAAAGTGGAAAGGTGC 356
Query 571 TAAAGGAGCTGCATCTTCATCTTCTGAATCAGATTCTGAGAGTGATGATGATGAATTGTC 630
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 357 TAAAGGAGCTG------CATCTTCTGAATCAGATTCTGAGAGTGATGATGATGAGTTGTC 410
Query 631 AGCCGATGATTTGGTGAAGCTCGTAGCTGAGAAGGAAGAGCTACTGTCTGAGAAGGAAGA 690
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 411 AAAGGATGATTTGGTGAAGCTCGTAGCTGAAAAGGAAGAGCTACTGTCTGAAAAGGAAGA 470
Query 691 AGAGATTAAGCAGTTGAAAGACAAAGTTCTTCGCACTTATGCTGAGATGGAGAATGTCAT 750
|||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGAGATTAAGAAAATGAAAGATAAAGTTCTTCGCACTTATGCTGAGATGGAGAATGTCAT 530
Query 751 GGACAGAACAAGACGTGATGCTGAAAACACCAAAAAGTATGCCGTACAGAATTTTGCAAA 810
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GGACAGAACAAGACGTGAAGCTGAAAACACCAAAAAGTATGCCGTACAGAATTTTGCAAA 590
Query 811 GAGCCTAT-TGGATGTGGCGGATAATCTTGGAAGAGCTTCTTCGGTTGTCAAAGAAAGCT 869
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GAGCCT-TCTGGATGTGGCGGATAATCTTGGAAGAGCTTCTTCGGTTGTCAAAGAAAGCT 649
Query 870 TCTCAAAGCTTGACACCTCAGAAGATTCTGCTGGAGCAGCTCCACTATTAAAGACCCTTT 929
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 650 TCTCAAAGCTTGACACCTCGGAAGATTCGGCTGGAGCAGCTCCACTATTGAAGACCCTTT 709
Query 930 TAGAAGGAGTGGAGATGACTGAGAAACAGCTTGCTGAGGTATTTAAGAAATTTGGTATGG 989
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 710 TAGAAGGAGTGGAGATGACTGAGAAACAGCTAGCTGAGGTATTTAAGAAATTTGGTATGG 769
Query 990 AGAAGTATGATCCTATAAACGAGCCATTTGATCCAAACAGACATAACGCAGTGTTCCAAG 1049
||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 770 AGAAGTATGATCCTACAAACGAGCCGTTTGATCCAAACAGACATAACGCAATGTTCCAAG 829
Query 1050 TCCCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTCTTGAAGTCTGGATACACGC 1109
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 830 TCCCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTCTTGAAGTATGGATACACGC 889
Query 1110 TGTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTTACCCAGGGAGGAGAGAACCAAG 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TGTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTTACCCAGGGAGGAGAGAACCAAG 949
Query 1170 AAGAAAAGAAAGAGTCTGATGCTTAAGAAGAAGTCAGCTGGTTTTCATAAATTTTGTTAC 1229
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 950 AAGAAAAGAAAGAGTCTGATGCTTAAGAAGAAGTCAGCTGGTTTCCATAAATTTTGTTAC 1009
Query 1230 GGTTCTATGTTTC------C--ATTAACATCTTCTCGAGTCTTCGAGTCATAGTTTTCTT 1281
||||||||||||| | |||||||||||||| |||||| |||||||||||||||
Sbjct 1010 GGTTCTATGTTTCGAGTTACTCATTAACATCTTCTCAAGTCTTTGAGTCATAGTTTTCTC 1069
Query 1282 TTGTGGTTTGGTTATTCATTAGATGAACAAGATCTCCCATAAGTTGCTGGACATGGCATT 1341
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1070 TTGTGGTTTGGTTATTCATTAGATGAACAAGATCTCCCATAAGTTCCTGGATGCGGCATT 1129
Query 1342 TGCAGGGGAAATCCTGCTTCTGTGTCTGTTTTCTCTATCTCCATGCTATAATTGAACGAG 1401
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1130 TGCAGGGGAAATCCTGCTTCTGTGTCTGTTTTCTCTATCTCCATGCTTTAATTGCACGAG 1189
Query 1402 GAAAATATCATTTTACA 1418
|||||||||||||||||
Sbjct 1190 GAAAATATCATTTTACA 1206
> Ahg495605 jgi|Araly1|495605|fgenesh2_kg.8__1421__AT5G55200.1
Length=1161
Score = 501 bits (271), Expect = 6e-141
Identities = 466/559 (83%), Gaps = 18/559 (3%)
Strand=Plus/Plus
Query 638 GATTTGGTGAAGCTCGTAGCTGAGAAGGAAGAGCTACTGTCTGAGAAGGAAG-AAGAGAT 696
|||||||||||||| || | |||||||||||| || || | | | || |||| ||
Sbjct 393 GATTTGGTGAAGCTTGTGGGTGAGAAGGAAGATCTTTTGAAGGTTCA-GCAGAAAGACAT 451
Query 697 TAAGCAGTTGAAAGACAAAGTTCTTCGCACTTATGCTGAG-ATGGAGAATGTCATGGACA 755
||| | ||||||| ||| |||||||||||||||||||| | | ||||| | |||||||
Sbjct 452 AAAGGAAATGAAAGATAAATTTCTTCGCACTTATGCTGAGCA-GCAGAATCTAATGGACA 510
Query 756 GAAC-AAGACGTGATGCTGAAAACACCAAAAAGTAT-GCCGTACAGAATTTTGCAAAGAG 813
| || || |||| ||||||||| | ||||||||| | ||||||||||| ||||||| |||
Sbjct 511 GGACTAA-ACGTAATGCTGAAAGCGCCAAAAAGT-TCGCCGTACAGAACTTTGCAACGAG 568
Query 814 CCTATTGGATGTGGCGGATAATCTTGGAAGAGCTTCTTCGGTTGTCAAAGAAAGCTTCTC 873
||| |||||||||||||||||||||| |||||||||||| ||||||||||| || || ||
Sbjct 569 CCTTTTGGATGTGGCGGATAATCTTGAAAGAGCTTCTTCAGTTGTCAAAGAGAGTTTTTC 628
Query 874 AAAGCTTGACACCTCAGAAGATTCTGCTGGAGCAGCTCCACTATTAAAGACCCTTTTAGA 933
||| | ||||| ||| ||||||| ||||| || |||||||| ||||| | ||| |||||
Sbjct 629 GAAGATCGACACTTCAAAAGATTCGGCTGGTGCTGCTCCACTGTTAAAAAACCTATTAGA 688
Query 934 AGGAGTGGAGATGACTGAGAAACAGCTT-GCTGAGGTATTTAAGAAATTTGGTATGGAG- 991
|||||||||||||||||||||||| || || ||||| ||||| |||| |||| ||| |
Sbjct 689 AGGAGTGGAGATGACTGAGAAACA-ATTAGCAGAGGTGTTTAAAAAATCTGGTTTGGTGA 747
Query 992 AAGTATGATCCTATAAACGAGCCATTTGATCCAAACAGACATAACGCAGTGTTCCAAGTC 1051
||| | |||||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 748 AAG-AAGATCCTTTAAATGAACCATTTGATCCAAACAGACATAACGCAGTGTTCCAAGTC 806
Query 1052 CCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTC-TTGAAGTCTGGATACACGCT 1110
|| |||||||| |||||| |||||||| ||||||||||| || |||||||||||| | |
Sbjct 807 CCAGATGCTTCCAAGCCAAAAGGCACAATTGCTCATGTCCTT-AAGTCTGGATACTCATT 865
Query 1111 GTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTTACCCAGGG-AG-GAGAGAACCAA 1168
||| || ||||||||||| |||||||||||||||||||| | | || | ||||| |||
Sbjct 866 GTACGATCGAGTTATAAGGCCAGCTGAGGTTGGTGTTACTT-GCGCAGTG-GAGAATCAA 923
Query 1169 GAAGAAAAGAAAGAGTCTG 1187
|||| ||||||||||||
Sbjct 924 GAAGGCGAGAAAGAGTCTG 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53173982020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5