BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26790.1
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492123 jgi|Araly1|492123|fgenesh2_kg.7__1556__AT4G26790.1 1949 0.0
> Ahg492123 jgi|Araly1|492123|fgenesh2_kg.7__1556__AT4G26790.1
Length=1623
Score = 1949 bits (1055), Expect = 0.0
Identities = 1218/1295 (94%), Gaps = 17/1295 (1%)
Strand=Plus/Plus
Query 396 aaaaaGCATGCAGCGAAACAGAGTTCTTGCGTTCTTGTTGCTAGCAGCTCAGCTCTTGGT 455
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 333 AAAAAGCATGCAGCGAAACAGAGTTCTTGCGTTCTTGTTGCTAGCAGCTCAGCTTTTGGT 392
Query 456 G-AAGATACCTGAAACGTGTGCAAAATTTCCCGCACTTATCGTATTTGGTGACTCAACTG 514
| || ||||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||
Sbjct 393 GCAA-ATACCTGAATCGTGTGCAAAAGTTCCTGCACTTATCGTATTTGGGGACTCAACTG 451
Query 515 TTGATTCAGGCAACAACAACCAGATTTCTACTGTTCTGAAGAGCAA-TTTCCAGCCATAT 573
| ||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||
Sbjct 452 TAGATTCAGGCAACAACAACCAGATTTCTACTGTTCTGAAGAGTAACTTT-CAGCCTTAT 510
Query 574 GGCCGGGATTACTTTGACGGCAAAGCGACTGGGAGATTTTCAAATGGCCGGATTGCACCA 633
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 511 GGCCGGGATTACTTTGACGGCAAAGCGACTGGGAGATTCTCAAATGGTCGGATTGCACCA 570
Query 634 GACTTCATTTCTGAAGGTTTGGGACTCAAGAACGCAGTCCCTGCCTACCTAGATCCAGCA 693
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 571 GACTTCATCTCTGAAGGTTTGGGACTCAAGAACGCAGTCCCTGCCTATCTAGATCCAGCA 630
Query 694 TACAACATTGCAGACTTTGCCACTGGTGTCTGTTTCGCTTCAGCTGGAACCGGCTTAGAC 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TACAACATTGCAGACTTTGCCACTGGTGTCTGTTTCGCTTCAGCTGGAACCGGCTTAGAC 690
Query 754 AATGCAACCTCTGCCGTGTTATCTGTAATGCCGCTATGGAAGGAAGTGGAATACTACAAA 813
|||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 691 AATGCAACCTCTGCTGTGTTATCTGTGATGCCGCTTTGGAAGGAAGTGGAGTACTACAAA 750
Query 814 GAATACCAAACCAGGCTAAGAAGCTACTTGGGTGAAGAGAAAGCTAATGAGATTATTAGT 873
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 GAATACCAGACCAGGCTAAGAAGCTACTTGGGTGAAGAGAAAGCTAATGAGATTATTAGT 810
Query 874 GAATCACTTTACCTGATTAGTATCGGAACCAACGATTTCCTGGAGAATTACTATCTTCTT 933
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 GAAGCACTTTACCTGATTAGTATCGGAACCAACGATTTCCTGGAGAATTACTATCTTCTT 870
Query 934 CCCCGCAAGTTACGGAAGTACTCAGTGAACGAGTACCAATATTTCCTGATAGGAATAGCA 993
|| || ||||||||||||||| | ||||||||||||||| |||||||||||||||| |||
Sbjct 871 CCTCGTAAGTTACGGAAGTACGCTGTGAACGAGTACCAAAATTTCCTGATAGGAATCGCA 930
Query 994 GCAGATTTCGTGACAGATATATACAGACTCGGAGCTCGGAAGATGTCTTTGTCGGGACTC 1053
|||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 931 GCAGGTTTCGTGACAGATATTTACAGACTCGGAGCTCGGAAGATGTCTTGGTCGGGACTC 990
Query 1054 TCTCCTTTTGGATGCTTACCCCTGGAAAGAACAACTCAGCTCTTTTATGGAAGCAAATGT 1113
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 TCTCCTTTTGGATGCTTGCCCCTGGAAAGAACAACTCAGCTCTTTTATGGAAGCAAATGT 1050
Query 1114 ATTGAAGAATACAACATTGTGGCTAGAGATTTCAACATCAAGATGGAAGA-GAAAGTCTT 1172
|| |||||||||||||||||||||||||||||||||| ||| |||||| | ||||||||
Sbjct 1051 ATCGAAGAATACAACATTGTGGCTAGAGATTTCAACACCAAAATGGAA-ATGAAAGTCTA 1109
Query 1173 CCAGTTGAACAGAGATCTGAACGGAATCCAGCTGGTGTTTTCAAATCCATATGACCTTGT 1232
||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1110 CCAGTTGAACAGAGAACTGGACGGAATCCAGCTTGTGTTTTCAAATCCGTATGACCTGGT 1169
Query 1233 TTCAGAAATCATATACCATCCTGAAGCATTCGGTTTCGAAAACGTAAGAAGTGCGTGTTG 1292
||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||
Sbjct 1170 TTCAGAAATCATATACCATCCTGAAGCATTCGGTTTCCAAAATGTAAGGAGTGCATGTTG 1229
Query 1293 CGGAACGGGATACTATGAGATGAGCTACTTGTGTGATAAAATGAACCCATTCACATGTTC 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 CGGAACGGGATACTATGAGATGAGCTACTTGTGTGATAAAATGAACCCATTCACATGTTC 1289
Query 1353 GGATGCAAGCAAATATGTATTTTGGGACTCATTTCACCCAACAGAGAAGACAAACGCCAT 1412
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1290 TGATGCAAGCAAATATGTATTTTGGGATTCATTTCACCCAACAGAGAAGACAAACGCCAT 1349
Query 1413 CGTAGCAAATCATGTTCTGAAATACGACTTATCTCGGTTTCAGTGATAAAATAAGAAAT- 1471
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1350 CGTAGCAAGTCATGTTCTGAAATACGACTTATCTCGGTTTCAGTGATAAA-TAAGAAAAG 1408
Query 1472 TGCTACACCACAAGCACTATAGTTATTAGTTAACCTACTAAATTCTTTCCTCCACAACAT 1531
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1409 TGCCACACCACAAGCACAATAGTTATTAGTTAACCTACTACATTCTTTCCTCCACAACAT 1468
Query 1532 ATATAt-t-t-tttt------CTGTGAGTTTCTTGTCTAGATATCACTCAAATCAAGCTT 1582
|||||| | | |||| |||| |||||||||| ||||| |||||||||| ||||||
Sbjct 1469 ATATATATATATTTTTTTTTTCTGTAAGTTTCTTGTTTAGATTTCACTCAAATTAAGCTT 1528
Query 1583 CCAAAATGTTGTACAAGAACCATTCTTCTTACTCTATGTTCGTGTGACTACATAAAGATG 1642
||| ||||||||| |||||||| |||||||||||| ||||| ||| ||||||||||||||
Sbjct 1529 CCAGAATGTTGTAAAAGAACCACTCTTCTTACTCTGTGTTCTTGTAACTACATAAAGATG 1588
Query 1643 CTACTGTGATGTTATAAAAATGGACAAGATCAAAC 1677
|||||||||||||||||| ||||| ||||||||||
Sbjct 1589 CTACTGTGATGTTATAAAGATGGAAAAGATCAAAC 1623
Score = 453 bits (245), Expect = 2e-126
Identities = 284/302 (94%), Gaps = 5/302 (2%)
Strand=Plus/Plus
Query 1 AAAAAGGAAGATGCGTTACATATACATCTGAAGCTTGCAATGGTACGAATCCTTCTATTT 60
||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||
Sbjct 1 AAAAAGGAAGATGCGTTACATAT--ATCTGAAGGTTGCAATAGTACGAATCCTTCTACTT 58
Query 61 TAAAATATTCTGTCTT-TCTCTCTTTTTTAGTAGCTATAAATACGGCTCTCTGCTGCACA 119
|||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 59 TAAATTATTCTGTCTTGTCTCTCCTTTTTAGTAGCTATAAATACGGCTCTCTGCTGCAAA 118
Query 120 ACTATTATTGAAACTCTCAATCATTTTCAGCTCATTACTCACCTCAACTAACTCTCTGTG 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 ACTATTATTGAAACTCTCAATCATATTCAGCTCATTACTCACCTCAACTAACTCTCTGTG 178
Query 180 GCCAAAAATAAACAGAGACATATCAGACTAAGGAGTATTTAATAAGCATCATCTAACAAC 239
||||||| |||||||||||| ||| |||||||||||||||||||||| |||||||||||
Sbjct 179 GCCAAAAGTAAACAGAGACAAATCTGACTAAGGAGTATTTAATAAGCTTCATCTAACAA- 237
Query 240 AGG-CCAAGGTATTAACTACACGAGCTAAATCTGTTTTAGTCAGGTTTGATAGAAGATAC 298
||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 238 AGGGCCAAGCTATTAACTACACGAGCGAAATCTGTTTTAGTCAGGTTTGATAGAAGATAC 297
Query 299 CT 300
||
Sbjct 298 CT 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001265230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5