BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26820.1
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354113 jgi|Araly1|354113|fgenesh1_pg.C_scaffold_7001286 798 0.0
> Ahg354113 jgi|Araly1|354113|fgenesh1_pg.C_scaffold_7001286
Length=963
Score = 798 bits (432), Expect = 0.0
Identities = 561/623 (90%), Gaps = 10/623 (2%)
Strand=Plus/Plus
Query 1 ATGGATGATGAACA-AAACCTGGTTGAAGAAATGAATCAACAGCTTCTGATAACCGTCAT 59
|||||||||||| | || | | |||||||| |||||||||| |||||| ||||||||||
Sbjct 1 ATGGATGATGAA-ATAAGCTTCGTTGAAGAGATGAATCAACGGCTTCTAATAACCGTCAC 59
Query 60 TGATACCGAAAAAGTCCCGGAACTCCGACCAATATCATCACGGAGCCACCAAGAATCCGA 119
||||||||| ||||||| ||||||| | ||||||||||||| | | |||||||||||||
Sbjct 60 CGATACCGAACAAGTCCCCGAACTCCAATCAATATCATCACGAAACGACCAAGAATCCGA 119
Query 120 ACCAGCTAATATCTCACACTGGTCACTACTTTTCAAACTCTTTCTAGCCATCACGATCAT 179
||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 120 ACCAGCTAACATCTCACAATGGTCACTACTCTTCAAACTCTTTCTAGCCATCACCATCAT 179
Query 180 GGGTGCTTGTGTAGCAGGTGTGACGTTTGTCATATTGATTACGCCAACTCCCCCCACAGT 239
||||||||| |||||| |||| ||||| ||||||||||||| |||||||| ||||| ||
Sbjct 180 GGGTGCTTGCGTAGCATGTGTCTCGTTTATCATATTGATTACACCAACTCCACCCACCGT 239
Query 240 ACACGTACAATCAATGCATATATCGTTCGCCAACCACAATCTCCCGGTCTGGTCCGCAAC 299
||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 240 TCACGTACAATCCATGCATATATCCTTCGCCAACCACAATCTACCGGTCTGGTCCGCAAC 299
Query 300 GTTCTCTATCAAAAACCCTAACGAGAAACTCCATGTCACGTACGAGAATCCTTCAGTGTG 359
||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 300 GTTCTCTATCAAAAATCCTAACGAGAAACTCCACGTCACGTACCAGAATCCTTCGGTGTG 359
Query 360 GCTGGT-TCACCGGGGAAAG-CTCGTGTCGACCGCAAGAGCTGATTCGTTCTGG-CAGAA 416
| | || ||||||||| ||| || |||||||| | |||| | ||||||||| || |||||
Sbjct 360 G-TTGTCTCACCGGGG-AAGACTTGTGTCGACGGTAAGAACCGATTCGTTC-GGACAGAA 416
Query 417 AGGCGGAGAGAAGAACGAGGTTATTGTCAA-GAGAAACGAAACAAAAGTTATCGATGAAG 475
|||||||||| ||||| |||| ||||| || | || ||||||| ||||||||||||||||
Sbjct 417 AGGCGGAGAGGAGAACAAGGTGATTGTGAATG-GAGACGAAACCAAAGTTATCGATGAAG 475
Query 476 AGGCGGCTTGGGAAATGGAGGATGAAGTGGCGGTGACAGGAGGTGTGGTGGGTCTTGATA 535
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 476 AGGCGGCTTGGGAAATGGAGGATGAAGTGGCGGTGACAGGAGGTGTGGTTGGTTTTGATA 535
Query 536 TGGTGTTTTCTGGGAGAGTAGGGTTTTATCCAGGAACTTCTGCTTTATGGGGAGAACAGT 595
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 536 TGGTGTTTTCTGGGAGAGTAGGGTTTTATCCAGGAGCTTCTGCTTTATGGGGAGAACAGT 595
Query 596 ACATGTCAGCCGTTTGTGAGAAT 618
|||||||||| |||||||| |||
Sbjct 596 ACATGTCAGCTGTTTGTGAAAAT 618
Score = 75.0 bits (40), Expect = 7e-13
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 652 ATCTATGGGACAAATAGATCGGTTTTGTCATTCGATGGTCGACTAG 697
||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 619 ATCTATGGGACAAATAGATCGGTTTTGTCGTTTGATGGTCGACTAG 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26838533568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5