BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26830.1
Length=1522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329002 jgi|Araly1|329002|fgenesh1_pm.C_scaffold_7001229 2069 0.0
> Ahg329002 jgi|Araly1|329002|fgenesh1_pm.C_scaffold_7001229
Length=1371
Score = 2069 bits (1120), Expect = 0.0
Identities = 1292/1375 (94%), Gaps = 11/1375 (1%)
Strand=Plus/Plus
Query 1 ATGGCCGTTTCTTTCTTACCTT-ATT--TTCTGATTCTTTCCTTCCTCTCAGCCATTGAC 57
||||||||||||||| |||||| || |||| ||||||||| || ||||||||||||||
Sbjct 1 ATGGCCGTTTCTTTCCTACCTTGTTTAATTCTCATTCTTTCCCTCTTCTCAGCCATTGAC 60
Query 58 GCACATTCTGGAATGGTCGGAGTCAATTATGGTCGGATAGCTAACAATCTCCCGTCGCCG 117
||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 61 GCACATTCTGGAATGATCGGAGTCAACTATGGCCGGATAGCTAACAACCTCCCGTCGCCG 120
Query 118 GAGAAAGTAGTGAACCTCCTGAAATCTCAAGGAATCAACCGTATCAAAATCTTCGACACC 177
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GAGAAAGTAGTGAACCTCCTGAAATCACAAGGAATCAACCGTATCAAAATCTTCGACACC 180
Query 178 GATAAGAATGTACTAACCGCACTTGCAAATTCCAAAATCAAAGTAATCGTCGCTCTCCCT 237
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 181 GATAAGAATGTACTAACCGCACTTGCAAATTCCAGAATCAAAGTAATCGTAGCTCTCCCC 240
Query 238 AACGAGCTTCTCTCCTCCGCCGCCTCCCACCAATCATTCGCCGACAACTGGATTAAAACC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 AACGAGCTTCTCTCCTCCGCCGCCTCCCACCAATCATTCGCCGACAACTGGATCAAAACC 300
Query 298 CACATAATGCCATACTTCCCAGCGACGGAGATCGAAGCTATCGCCGTCGGTAACGAAGTA 357
||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 301 CACATAATGTCATACTTCCCAGCGACAGAGATCGAAGCTATCGCCGTTGGTAACGAAGTA 360
Query 358 TTCGTCGATCCGACGATCACGCCGTATCTTGTCAATGCGATGAAGAACATTCACACCTCT 417
||||||||||||| || |||||| ||||||||| |||||||||||||||||||||||||
Sbjct 361 TTCGTCGATCCGAAGAACACGCCCTATCTTGTCTCTGCGATGAAGAACATTCACACCTCT 420
Query 418 CTGGTTAAGTATAAACTCGACAAAGCCATCAAGATCTCGTCTCCTATTGCTCTTAGCGCG 477
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 421 CTGGTTAAGTATAACCTCGACAAAGCCATCAAGATCTCTTCTCCGATTGCTCTTAGCGCG 480
Query 478 CTTGCTAATTCGTACCCGCCTTCCTCTGGTTCTTTTAAACCGGAATTAATCGAACCGGTT 537
|| ||||||||||||||||| || || ||||||||||||||||| |||||||||||||||
Sbjct 481 CTGGCTAATTCGTACCCGCCATCTTCCGGTTCTTTTAAACCGGATTTAATCGAACCGGTT 540
Query 538 GTTAAACCAATGCTTGCTCTGCTTCAACAAACGTCGTCGTATCTTATGGTAAATGCTTAT 597
|||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||
Sbjct 541 ATTAAACCAATGCTTGCTCTGCTACAACAAACGTCGTCGTTTCTCATGGTAAATGCTTAC 600
Query 598 CCGTTTTTCGCTTACGCAGCAAACGCCGATAAAATCTCTTTAGACTACGCTCTGTTTAAA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCGTTTTTCGCTTACGCAGCAAACGCCGATAAAATCTCTTTAGACTACGCTCTGTTTAAA 660
Query 658 GAAAACGCCGGGAATATAGATTCCGGTACCGGATTGAAGTACAACAGTCTCTTTGACGCT 717
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 CAAAACGCCGGGAATATAGATTCCGGTACCGGATTGAAGTACAACAGTCTTTTTGACGCA 720
Query 718 CAAATAGACGCCGTTTACGCGGCATTGTCCGCCGTCGGATTTAAAGGCGTTAAGGTGATG 777
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 CAAATCGACGCCGTTTACGCGGCATTGTCTGCCGTCGGATTTAAAGGCGTTAAGGTGATG 780
Query 778 GTGACGGAAACAGGGTGGCCTTCCGTTGGAGATGAGAATGAGATTGGTGCAAGCGAATCT 837
|||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 781 GTGACGGAGACAGGGTGGCCTTCCGTTGGAGACGAGAACGAAATTGGTGCAAGCGAATC- 839
Query 838 AA-CGCGGCGGCGTATAACGCCGGACTTGTGAAGAGAGTGTTAACGGGTAAAGGAACACC 896
|| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||
Sbjct 840 AACCGCGGCGGCGTATAACGGTGGACTCGTGAAGAGAGTGTTAACCGGTAAAGGAACGCC 899
Query 897 GTTAAGACCGACGGAGCCACTTAACGTCTATTTATTCGCTTTATTCAACGAAAACCAGAA 956
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTAAGACCGAAGGAGCCACTTAACGTCTATTTATTCGCTTTATTCAACGAAAACCAGAA 959
Query 957 ACCGGGGCCAACGTCTGAGAGAAACTACGGTTTGTTTTACCCAAACGAAGGGAAAGTGTA 1016
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 960 ACCGGGGCCAACGTCTGAGAGAAACTACGGAATGTTTTACCCAAACGAAGGGAAAGTGTA 1019
Query 1017 CAACGTTCCGTTCACTAAAA--AG-TCAACGACGCCGGTCAACGGTAACAGAGGTAAAGT 1073
| ||||||||||| | | | || |||||| | | ||||||||||||||||| | | ||
Sbjct 1020 CGACGTTCCGTTCTCCAGAGTGAGGTCAACG-C-C-GGTCAACGGTAACAGAGATCATGT 1076
Query 1074 TCCGGTGACGCACGAGGGACATACATGGTGCGTTTCGAACGGAGAGGTAGCGAAGGAGAA 1133
||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 1077 CCCGGTGACGCATGAGGGACACACGTGGTGCGTTTCGAACGGAGAGGTTGCGAAGGAGAA 1136
Query 1134 ACTTCAGGAGGCTCTTGATTACGCTTGCGGAGAAGGAGGAGCTGATTGCCGCCCGATTCA 1193
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1137 GCTTCAGGAGGCTCTTGATTACGCTTGCGGAGAAGGAGGAGCTGATTGCCGTCCGATTCA 1196
Query 1194 GCCAGGTGCCACGTGTTATCATCCTGAGTCGTTAGAAGCTCACGCTTCGTACGCCTTCAA 1253
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1197 GCCAGGTGCCACGTGTTATCATCCTGAGTCGTTAGAAGCTCACGCTTCGTACGCTTTTAA 1256
Query 1254 TAGTTACTACCAGAAGAACTCACGTCGTGTTGGTACGTGCTTCTTTGGTGGAGCTGCTCA 1313
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1257 CAGTTACTACCAGAAGAACTCACGTCGTGTTGGTACGTGCTACTTTGGTGGAGCTGCTCA 1316
Query 1314 CGTCGTCACGCAACCTCCTCGATATGGAAAATGCGAGTTTCCCACCGGACATTGA 1368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CGTCGTCACGCAACCTCCTCGATATGGAAAATGCGAGTTTCCCACCGGACATTGA 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56983006520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5