BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26840.1
Length=715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492116 jgi|Araly1|492116|fgenesh2_kg.7__1549__AT4G26840.1 961 0.0
Ahg950171 jgi|Araly1|950171|scaffold_802058.1 335 3e-91
> Ahg492116 jgi|Araly1|492116|fgenesh2_kg.7__1549__AT4G26840.1
Length=690
Score = 961 bits (520), Expect = 0.0
Identities = 654/714 (92%), Gaps = 27/714 (4%)
Strand=Plus/Plus
Query 1 ACAAAAGCCACGGCCAAT-TA-GAGAGATTTTCAGAGTCAGTCTTTTTATATTCATCTCT 58
|||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 1 ACAAAAGCCACGGCCAATAAATTAGAGATTTTCAGAGTCAGTCTTTTTGTATTCATCTCT 60
Query 59 CAGCATCATTCTTTGATTGTGTGAATCTCTCATCGTTCTCTCAAATTTCGTGTTTTTGTA 118
|||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |
Sbjct 61 CAGCATCATTCTTTGATTGTGTGAATCTTTCATCGTTATCTCAAATTTCGTATTTTTATC 120
Query 119 ACCGGACGGAGAACCTTTCACGATGTCTGCAAACCAGGAGGAAGACAAGAAGCCAGGAGA 178
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 121 ACCGGACGGAGAATCTTTCACGATGTCTGCAAACCAGGAAGAAGACAAGAAGCCAGGCGA 180
Query 179 CGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGGATGGAAACGAGGTTTTCTTTAG 238
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 181 CGGAGGAGCTCACATCAACCTGAAAGTCAAGGGACAGGATGGAAACGAGGTGTTCTTTAG 240
Query 239 GATCAAGAGAAGCACTCAGCTCAAGAAGCTGATGAATGCTTACTGTGACCGGCAATCTGT 298
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 GATCAAGAGAAGCACCCAGCTCAAGAAGCTCATGAATGCTTACTGTGACCGGCAATCTGT 300
Query 299 GGACATGAACTCCATTGCTTTCTTGTTTGATGGGCGTCGTCTTCGTGCTGAGCAAACTCC 358
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 301 GGACATGAACTCCATTGCTTTCTTGTTTGATGGCCGTCGTCTGCGTGCTGAGCAAACTCC 360
Query 359 CGATGAGCTTGACATGGAGGATGGTGATGAGATCGATGCGATGCTCCATCAGACTGGTGG 418
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGATGAGCTTGACATGGAGGACGGTGATGAGATCGATGCGATGCTCCATCAGACTGGTGG 420
Query 419 CAGCGGTGGTGGTGCTACGGCCTGACACTTCGTCCAGGTTTAGGGCTTGTGTGTGATATG 478
||| ||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 421 CAGAGGTGGTGGTGCTATGGCCTGACACTTCCTCCGGGTTTAGGGCTTGTGTG--ATATG 478
Query 479 AATGGTTAAGGAGTAATCGGCATTAGGATTTGCAGACTTGtttttttATCGTGACCATTC 538
||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||
Sbjct 479 AATGGTTAAGGAGTATTCGGCATTAGGAATTGCAGACTTGTTTTT--ATCGTGACCATTC 536
Query 539 TCTTTAGAAACTAAGTTATTATGGTCACGAAGGTTAAAGAACCCTTTGGTTGATTTTTTG 598
||| ||||||||| || | | || | |||||||||||||||||||
Sbjct 537 TCTCTAGAAACTA------------CA--A-G-TTC--G--CCCTTTGGTTGATTTTTTG 576
Query 599 TCTTGTTCGTTTGGTATCGGATCCTATGATACTACTATTTCGGCTTAAAGGTGTTATTAA 658
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 577 TCTTGTTCGTTTGGTATTGGATCCTATGATATTACTATTTCGGCTTAAAGGTGTTATTAA 636
Query 659 CCCAATTATCTAAAGTTTGTTGGTATGGTAACGGT-AAAAAGCTATTAATTATT 711
||| ||||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct 637 CCCGATTATCTAAAGTTTGTTGGTATGGTAACGATGAAAAAGCTATAAATTATT 690
> Ahg950171 jgi|Araly1|950171|scaffold_802058.1
Length=433
Score = 335 bits (181), Expect = 3e-91
Identities = 249/281 (89%), Gaps = 7/281 (2%)
Strand=Plus/Plus
Query 140 GATGTCTGCAAAC-CAGGAGGAAGACAAGAAGCCAGGAGACGGAGGAGCTCACATCAATC 198
||||||||| || ||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 21 GATGTCTGC-TACTCAGGAAGAAGACAAGAAGCC---TGACCAAGGAGCTCACATCAATC 76
Query 199 TCAAAGTCAAGGGACAGGATGGAAACGAGGT-TTTCTTTAGGATCAAGAGAAGCACTCAG 257
|||||||||||||||||||||| || || || ||| ||||||||||||||||||||||||
Sbjct 77 TCAAAGTCAAGGGACAGGATGGTAATGAAGTCTTT-TTTAGGATCAAGAGAAGCACTCAG 135
Query 258 CTCAAGAAGCTGATGAATGCTTACTGTGACCGGCAATCTGTGGACATGAACTCCATTGCT 317
||||| |||||||||||||||||||||||||| || |||||||| | ||||| ||||||
Sbjct 136 CTCAAAAAGCTGATGAATGCTTACTGTGACCGTCAGTCTGTGGATTTCAACTCAATTGCT 195
Query 318 TTCTTGTTTGATGGGCGTCGTCTTCGTGCTGAGCAAACTCCCGATGAGCTTGACATGGAG 377
|||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct 196 TTCTTGTTTGATGGTCGTCGTCTTCGTGCAGAGCAGACTCCAGATGAGCTTGAAATGGAA 255
Query 378 GATGGTGATGAGATCGATGCGATGCTCCATCAGACTGGTGG 418
||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 256 GATGGAGATGAGATTGATGCAATGCTTCATCAGACTGGTGG 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26304812730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5