BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26850.1
Length=2084
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492115 jgi|Araly1|492115|fgenesh2_kg.7__1548__AT4G26850.1 3001 0.0
Ahg950164 jgi|Araly1|950164|scaffold_802051.1 785 0.0
> Ahg492115 jgi|Araly1|492115|fgenesh2_kg.7__1548__AT4G26850.1
Length=1994
Score = 3001 bits (1625), Expect = 0.0
Identities = 1882/1999 (94%), Gaps = 46/1999 (2%)
Strand=Plus/Plus
Query 68 aaaCCCACATCAAAAGATCTCTCATTTATTCGTTTCGTTTCTGCTGTTTTGAGTGTCGGG 127
||||||||||||||||||||||| || |||||||||| |||||||||||||||||| ||
Sbjct 24 AAACCCACATCAAAAGATCTCTC-CTT-TTCGTTTCGTGTCTGCTGTTTTGAGTGTC-GG 80
Query 128 TTCGTTTTAGCTGTAATCtttttttCCGGCGTTCGATTTGAAAAAATCCGGGGAACAGGT 187
| || | | ||||||||||||||||||||||||||||||| |||||||
Sbjct 81 ---G--TT--C-G--------TTTTCCGGCGTTCGATTTGAAAAAATCCGGGAAACAGGT 124
Query 188 GATCGGAATCACGGCTATACACGGGATATCACGGGGTGTTAGCTCACATGTCCATATTGT 247
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 125 GATCGGAATCACGGCTATACACGGGATATCACGGGGTGTTAGCTCTCATGTCCATATTGT 184
Query 248 CCGACAGAAGGGTTGTTTAATCGAAACTAATCCTTTGCCGCACGGAGGACGTGGAGCTCT 307
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TCGACAGAAGGGTTGTTTAATCGAAACTAATCCTTTGCCGCACGGAGGACGTGGAGCTCT 244
Query 308 GCCGTCTGAAGGCGGCAGCCCTTCCGATCTCCTCTTTCTCGCCGGTGGCGGTTCCAGctt 367
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 245 GCCGTCTGAAGGCGGCAGCCCTTCCGATCTCCTCTTTCTCGCCGGAGGCGGTTCCACCTT 304
Query 368 taacttcttttcctttaggttttaggagttaggg-t-ttgttagtgttttttccttcttc 425
||| |||| |||||||||||||||||||||||| | || |||| ||||||||||| ||
Sbjct 305 CAACCTCTTGTCCTTTAGGTTTTAGGAGTTAGGGTTGTTATTAGAGTTTTTTCCTT-TT- 362
Query 426 tttttttggtgctcttgaatcgcttttttcttggggg-aagttttttc-ttttgctcttc 483
||||||| |||| ||||||||| | ||||||||||| || ||||||| ||||||||| |
Sbjct 363 TTTTTTTTCTGCTGTTGAATCGC-TCTTTCTTGGGGGAAACTTTTTTCTTTTTGCTCTAC 421
Query 484 gaaa-tttgtcttttttgAGAATGTTGAAAATCAAAAGAGTTCCGACCGTTGTTTCGAAC 542
|||| ||| | ||||| |||||||||||||||||| |||||||||||||| || ||||||
Sbjct 422 GAAAGTTTTTGTTTTTGGAGAATGTTGAAAATCAAGAGAGTTCCGACCGTCGTATCGAAC 481
Query 543 TACCAGAAGGACGATGGAGCGGAGGATCCCGTCGGCTGTGGACGGAATTGCCTCGGCGCT 602
||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 482 TACCAGAAGGACGATGGAGCGGATGATTCCGTCGGCTGTGGACGGAATTGCCTTGGCGCT 541
Query 603 TGTTGCCTTAACGGGGCTAGGCTTCCATTGTATGCATGTAAGAATCTGGTA-AAAT-C-- 658
|||||| |||||||||||||||||||||||||||||||||||||| ||| | |||| |
Sbjct 542 TGTTGCATTAACGGGGCTAGGCTTCCATTGTATGCATGTAAGAATATGG-AGAAATCCGG 600
Query 659 CG--G-AGAGAAGCTTGTAATCAGTCATGAGGCTATAGAGCCTCCTGTAGCTTTTCTCGA 715
|| | |||||||||||||||||| |||| |||| |||||||||||| |||||||||||
Sbjct 601 CGCCGTGGAGAAGCTTGTAATCAGTAATGAAGCTAAAGAGCCTCCTGTGGCTTTTCTCGA 660
Query 716 GTCCCTTGTTCTCGGAGAGTGGGAGGATAGGTTCCAAAGAGGACTTTTTCGCTATGATGT 775
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTCCCTCGTTCTCGGAGAGTGGGAGGATAGGTTCCAAAGAGGACTTTTTCGCTATGATGT 720
Query 776 CACTGCCTGCGAAACCAAAGTTATCCCGGGGAAGTATGGTTTCGTTGCTCAGCTTAACGA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CACTGCCTGCGAAACCAAAGTTATCCCGGGGAAGTATGGTTTCGTTGCTCAGCTTAACGA 780
Query 836 GGGTCGTCACTTGAAGAAGAGGCCAACTGAGTTCCGTGTAGATAAGGTGTTGCAGTCTTT 895
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGGTCGTCACCTGAAGAAGAGGCCAACTGAGTTCCGTGTAGATAAGGTGTTGCAGTCTTT 840
Query 896 TGATGGCAGCAAATTCAACTTCACTAAAGTTGGCCAAGAAGAGTTGCTCTTCCAGTTTGA 955
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGATGGCACCAAATTCAACTTCACTAAAGTTGGCCAAGAAGAGTTGCTCTTCCAGTTTGA 900
Query 956 AGCTGGTGAAGATGCCCAAGTTCAGTTCTTCCCTTGCATGCCTATTGACCCTGAGAATTC 1015
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 AGCTGGTGAAGATGCCCAAGTTCAGTTCTTCCCTTGCATGCCTCTTGACCCTGAGAATTC 960
Query 1016 TCCCAGTGTTGTTGCCATCAATGTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCC 1075
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 961 TCCCAATGTTGTTGCCATCAATGTTAGTCCGATAGAGTATGGGCATGTGCTGCTGATTCC 1020
Query 1076 TCGTGTTCTTGACTGCTTGCCTCAAAGGATCGATCACAAAAGCCTTTTGCTTGCAGTTCA 1135
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1021 TCGTGTTCTTGACTGCTTGCCTCAGAGGATCGATCACAAAAGCCTTTTGCTTGCAGTTCA 1080
Query 1136 CATGGCTGCTGAGGC-TGCTAATCCATACTTCAGACTCGGTTACAACAGCTTGGGTGCTT 1194
||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1081 CATGGCTGCTGAGGCCT-CTAATCCATACTTCAGACTCGGTTACAACAGCTTAGGTGCTT 1139
Query 1195 TTGCCACTATCAATCATCTCCACTTTCAGGCTTATTACTTGGCCATGCCTTTCCCACTGG 1254
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1140 TTGCCACGATCAATCATCTTCACTTTCAGGCTTATTACTTGGCCATGCCTTTCCCTCTGG 1199
Query 1255 AGAAAGCTCCTACCAAGAAGATAACTACCACTGTTAGTGGTGTCAAAATCTCAGAGCTTC 1314
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGAAAGCTCCTTCCAAGAAGATAACTACCACTGTTAGTGGTGTCAAAATCTCAGAGCTTC 1259
Query 1315 TAAGTTACCCTGTGAGAAGTCTTCTCTTTGAAGGTGGAAGCTCTATGCAAGAACTATCTG 1374
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1260 TAAGTTACCCTGTGAGAAGTCTTCTTTTTGAAGGTGGAAGCTCTATGCAAGAGCTATCCG 1319
Query 1375 ATACTGTTTCAGACTGC-TGTGTTTGCCTTCAAAACAACAACATTCCTTTCAACATTCTC 1433
||||||| |||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1320 ATACTGTATCAGAC-GCCTGTGTTTGCCTTCAGAACAACAACATTCCTTTCAACATTCTC 1378
Query 1434 ATCTCTGATTGTGGAAGGCAGATCTTCTTAATGCCACAGTGTTACGCAGAGAAACAGGCT 1493
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1379 ATCTCTGATTGTGGAAGGCAGATCTTCTTGATGCCACAGTGTTACGCAGAGAAACAGGCT 1438
Query 1494 CTAGGTGAAGTGAGCCCGGAGGTATTGGAAACACAAGTGAACCCAGCCGTGTGGGAGATA 1553
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1439 CTAGGTGAAGTAAGCCCGGAGGTGTTGGAAACACAAGTGAACCCAGCCGTGTGGGAGATA 1498
Query 1554 AGTGGTCACATGGTACTGAAGAGGAAAGAGGATTACGAAGGTGCTTCAGAGGATAACGCG 1613
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1499 AGTGGTCACATGGTACTGAAGAGGAAAGAGGATTACGAAGGAGCTTCAGAGGATAACGCG 1558
Query 1614 TGGAGGCTCCTTGCGGAAGCTTCTCTGTCGGAGGAAAGGTTTAAGGAGGTTACTGCTCTC 1673
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1559 TGGAGGCTCCTTGCAGAAGCTTCTCTGTCGGAGGAAAGGTTTAAGGAGGTTATTGCTCTC 1618
Query 1674 GCCTTTGAAGCCATAGGTTGTAGTAACCAAGAGGAGGATCTTGAAGGAACCATAGTTCAT 1733
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1619 GCCTTTGAAGCCATAGGTAGTAGTAACCACGAGGAGGATCTTGAAGGAACCATAGTTCAT 1678
Query 1734 CAGCAAAACTCTAGTGGCAATGTTAACCAGAAAAGCAACAGAACCCATGGAGGTCCGATC 1793
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1679 CAGCAAAACCCTAGTGGCAATGTTAACCAGAAAAGCAACCGAACCCATGGAGGTCCGATC 1738
Query 1794 ACAAATGGGACGGCCGCCGAGTGCCTTGTCCTTCAGTGAACAATATGGTGACTTGGTGGT 1853
||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1739 ACAAACGGGACGGCCGCGGAGTGCCTTGTCCTTCAGTGAACAATATTGTGACTTGGTGGT 1798
Query 1854 TTGTATGTATAATTAAAAGCCTAAATAAGCAAACTCTCTTTGTAGTTGCATTTGAAGCTT 1913
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1799 TTGTATGTATAATTAAAAGCCTAAATAAGCAAACTCTCTTTGTAGTTGCATTCGAAGCTT 1858
Query 1914 CTTGGTTTAT-GTATGATGGTTGTGGGCATTTTGTGCCT--AGACTT-CTGGTTCTTTGT 1969
||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1859 CTTGGTT-ATTGTATGATGGTTGTGGGCATTTTGTGCCTCTAGACTTACTGGTTCTTTGT 1917
Query 1970 TTTTTGTTATGAGTTGGTGTTTATGAATTATATATGTTCTTCACTAATATGATTATTATT 2029
|||| ||||| ||||||||||||||||| |||||| |||||||| | ||||||||||||
Sbjct 1918 TTTT-GTTATAAGTTGGTGTTTATGAAT-ATATATTTTCTTCACGAGGATGATTATTATT 1975
Query 2030 TGTATAGATTTGATTATTC 2048
||||||||||||||| |||
Sbjct 1976 TGTATAGATTTGATTGTTC 1994
> Ahg950164 jgi|Araly1|950164|scaffold_802051.1
Length=1330
Score = 785 bits (425), Expect = 0.0
Identities = 795/973 (82%), Gaps = 27/973 (3%)
Strand=Plus/Plus
Query 711 CTCGAGTCCCTTGTTCTCGGAGAGTGGGAGGATAGGTTCCAAAGAGGACTTTTTCGCTAT 770
||||| || || ||||| ||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 210 CTCGAATCTCTAGTTCTTGGAGAGTGGGAAGATCGTTTCCAAAGAGGACTTTTTCGCTAT 269
Query 771 GATGTCACTGCCTGCGAAACCAAAGTTATCCCGGGGAAGTATGGTTTCGTTGCTCAGCTT 830
|||||||| |||||||||||||| ||||| ||||||||||| |||||| |||| |||||
Sbjct 270 GATGTCACCGCCTGCGAAACCAAGGTTATACCGGGGAAGTACGGTTTCATTGCGCAGCTG 329
Query 831 AACGAGGGTCGTCACT-TGAAGAAGAGGCCAACTGAGTTCCGTGTAGA-TAAGGTGTTGC 888
|| || |||||||| | | |||||||| ||||| |||||| |||| || ||| | || |
Sbjct 330 AATGAAGGTCGTCA-TCTCAAGAAGAGACCAACCGAGTTCTGTGTTGACAAAGTTCTT-C 387
Query 889 AGTCTTTTGATGGCAGCAAATTCAACTTCACTAAAGTTGGCCAAGAAGAGTTGCTCTTCC 948
| | |||||||| | ||| ||||| |||||||||||||| |||||||||||||| ||||
Sbjct 388 AACCATTTGATGGAAACAAGTTCAATTTCACTAAAGTTGGTCAAGAAGAGTTGCTTTTCC 447
Query 949 AGTTTGAAGCT-G--GTGAA-GATGCCCA-AGT----T-CAGTTCTTCCCTTGCATGCCT 998
||||||||||| | | || || | | ||| | |||||||| || | || |||
Sbjct 448 AGTTTGAAGCTAGCAAT-AACGACGATGATAGTAAAATCCAGTTCTTGCCGAGTATCCCT 506
Query 999 ATTGACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAATGTTAGTCCGATAGAGTATGGC 1058
| ||| | || |||||||| || || ||||| |||||||| |||||||| ||||||||
Sbjct 507 CTAGACGCGGATAATTCTCCAAGCGTCGTTGCAATCAATGTGAGTCCGATTGAGTATGGA 566
Query 1059 CATGTGCTGCTGATTCCTCGTGTTCTTGACTGCTTGCCTCAAAGGATCGATCACAAAAGC 1118
|||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 567 CATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTGCCTCAAAGGATTGATCACAAAAGC 626
Query 1119 CTTTTGCTTGCAGTTCACATGGCTGCTGAGGCTGCTAATCCATACTTCAGACTCGGTTAC 1178
||||||||||| |||| ||||| ||||| || |||||||| || ||| |||| || |||
Sbjct 627 CTTTTGCTTGCTCTTCAAATGGCGGCTGAAGCCGCTAATCCGTATTTCCGACTTGGATAC 686
Query 1179 AACAGCTTGGGTGCTTTTGCCACTATCAATCATCTCCACTTTCAGGCTTATTACTTGGCC 1238
||||| || || |||||||| || ||||| ||||| |||||||||||||| || |||||
Sbjct 687 AACAGTTTAGGAGCTTTTGCTACCATCAACCATCTTCACTTTCAGGCTTACTATTTGGCA 746
Query 1239 ATGCCTTTCCC-ACTGGAGAAAGCTCCTACCAAGAAGATAACTACCACTGTTAGTGGTGT 1297
|||| ||||| | | ||||||||| || || |||||| ||||||||| || || ||
Sbjct 747 ATGCAATTCCCGA-TTGAGAAAGCTTCTTCCTTGAAGATCACTACCACTAATAACGGCGT 805
Query 1298 CAAAATCTCAGAGCTTC-T-AAGTTACCCTGTGAGAAGTCTTCTCTTTGAAGGTGGAAGC 1355
|||||||||| | | || | || |||||||||||| ||||||| ||||||||||||| |
Sbjct 806 CAAAATCTCAAAAC-TCTTGAA-TTACCCTGTGAGGGGTCTTCTATTTGAAGGTGGAAAC 863
Query 1356 TCTATGCAAGAACTATCTGATACTGTTTCAGACTGC-TGTGTTTGCCTTCAAAACAACAA 1414
|| || |||| || ||||||||||| ||||| ||| | ||||| ||||| ||||||||
Sbjct 864 TCCATTAAAGATCTCTCTGATACTGTATCAGA-TGCATCCGTTTGTCTTCAGAACAACAA 922
Query 1415 CATTCCTTTCAACATTCTCATCTCTGATTGTGGAAGGCAGATCTTC-TTAATGCCACAGT 1473
||||||||||||||||||||||||||||| ||||| || |||||| || | || ||||
Sbjct 923 CATTCCTTTCAACATTCTCATCTCTGATTCTGGAAAACAAATCTTCCTTC-TCCCTCAGT 981
Query 1474 GTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAAACACAAGTGA 1533
|||||||||||||||| ||| |||| ||||| ||| | || ||||||| || |||||||
Sbjct 982 GTTACGCAGAGAAACAAGCTTTAGGAGAAGTTAGCTCAAAGCTATTGGATACGCAAGTGA 1041
Query 1534 ACCCAGCCGTGTGGGAGATAAGTGGTCACATGGTACTGAAGAGGAAAGAGGATTACGAAG 1593
| ||||| || |||||||| ||||| |||||||| ||||||||||||| || |||||||
Sbjct 1042 ATCCAGCGGTTTGGGAGATGAGTGGACACATGGTGTTGAAGAGGAAAGAAGACTACGAAG 1101
Query 1594 GTGCTTCAGAGGATAACGCGTGGAGGCTCCTTGCGGAAGCTTC-TCTGTCGGAGGAAAGG 1652
| |||||||| || || || |||||| | || || |||| ||| | | || ||||| ||
Sbjct 1102 GAGCTTCAGAAGAGAAGGCATGGAGGTTACTAGCTGAAGTTTCGT-TATCAGAGGAGAGA 1160
Query 1653 TTTAAGGAGGTTA 1665
|| || || ||||
Sbjct 1161 TTCAAAGAAGTTA 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78389724210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5