BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26870.1
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490730 jgi|Araly1|490730|fgenesh2_kg.7__163__AT4G26870.1 2708 0.0
Ahg491623 jgi|Araly1|491623|fgenesh2_kg.7__1056__AT4G31180.1 1279 0.0
> Ahg490730 jgi|Araly1|490730|fgenesh2_kg.7__163__AT4G26870.1
Length=1691
Score = 2708 bits (1466), Expect = 0.0
Identities = 1580/1630 (97%), Gaps = 27/1630 (2%)
Strand=Plus/Plus
Query 169 CATCATCTCTTTCTCTGGAGGAGGAGGATGAATCGTGTTCCAGCAACTACGGTGACGTGA 228
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 86 CATCATCTCTTTCTCT---GGAGGAGGATGAATCGTTTTCCAGCAACTACGGTGACGTGA 142
Query 229 CTACTAACGAGTTGCAGTCGGCTGTTGAGGGAAAAGAGCTCACTGATGTGAGCAACTTGG 288
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 143 CTACTAACGAGTTGCAGTCGGCTGTTGAGGGAAAAGAGCTGACTGATGTGAGCAACTTGG 202
Query 289 TTGAAGAGATTGTGGGGTCAGAGGTTTCGATCAGAGGTCGACTGCACAAGAATCGCTTAG 348
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 203 TTGAAGAGATTGTGGGGTCAGAGGTTTCGATCAGAGGTCGAGTGCACAAGAATCGCTTAG 262
Query 349 TCGGTACCAAATTGTTTGTGATCTTGAGGGAAAGTGGATTCACGGTTCAATGCGTGGTGG 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 TCGGTACCAAATTGTTTGTGATCTTGAGGGAAAGTGGATTCACGGTTCAATGCGTGGTGG 322
Query 409 AGGAGACCAGAGTTGGTGCAAACATGATTAAATTTGTCAAGCAGCTGAGTCGTGAATCTG 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 AGGAGACCAGAGTTGGTGCAAACATGATTAAATTTGTCAAGCAGCTGAGTCGTGAATCTG 382
Query 469 TTGTTGAGCTTATCGGTGTCGTCTCTCACCCTAAGAAGCCTCTCACAGGAACCACCCAGC 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 383 TTGTTGAGCTTATCGGTGTCGTCTCTCACCCTAAGAAGCCTCTCACAGGAACCA--C--C 438
Query 529 AGGTTGAAATACATGTCAGAAAAATGTACTGCCTCAGCAGATCCTTGCCAAATTTACCAC 588
|| | ||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 439 -----------CA-G-CAGAAAAATGTACTGCCTC-GCAGATCCTTGCTAAATTTACCAC 484
Query 589 TTGTTGTGGAGGATGCTGCTCGTAGTGAATCAGATATTGAAAAATCTGGCAAGGATGGCA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TTGTTGTGGAGGATGCTGCTCGTAGTGAATCAGATATTGAAAAATCTGGCAAGGATGGCA 544
Query 649 AACAAGCTGCTCGTGTCCTTCAGGACACACGTTTGAATAATAGGGTTCTTGACATCAGAA 708
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 AACCAGCTGCTCGTGTCCTTCAGGACACACGTTTGAATAATAGGGTTCTTGACATCAGAA 604
Query 709 CACCGGCTAATCAAGCCATCTTCCGTATTCAGTGCCAAGTCCAAATTGCGT-TCAGAGAA 767
|||||||||||||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 605 CACCGGCTAATCAAGCCATCTTCCGTATTCAGTGCCAAGTCCAAATTG-ATATTA-TGAT 662
Query 768 TACTTACAATCC-AA-GGGGTTTCTTGAAATCCACACACCGAAATTGATCGCTGGCAGTA 825
| | | |||| || ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 663 TTGTCATTATCCTAATAGGG-TTCTTGAAATCCACACACCGAAATTGATGGCTGGCAGTA 721
Query 826 GTGAAGGAGGTTCTGCTGTGTTTAGGTTGGACTACAAAGGGCAGCCTGCTTGTCTGGCTC 885
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GTGAAGGAGGTTCCGCTGTATTTAGGTTGGACTACAAAGGGCAGCCTGCTTGTCTGGCTC 781
Query 886 AGTCTCCTCAGCTTCATAAGCAGATGGCGATATGTGGTGACATGCGACGCGTCTTTGAGG 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 AGTCTCCTCAGCTTCATAAGCAGATGGCGATATGTGGTGACATGCGACGCGTCTTTGAGG 841
Query 946 TTGGTCCTGTTTTCAGAGCTGAAGACTCCTTCACTCATAGACACCTGTGTGAATTCGTTG 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TTGGTCCTGTTTTCAGAGCTGAAGACTCCTTCACTCATAGACACCTGTGTGAATTCGTTG 901
Query 1006 GTCTTGATGTGGAGATGGAGATTCGAATGCACTACTCTGAGATAATGGATCTTGTGGGGG 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GTCTTGATGTGGAGATGGAGATTCGAATGCACTACTCTGAGATAATGGATCTTGTGGGGG 961
Query 1066 AGTTGTTTCCGTTCATATTCACAAAAATAGAAGAAAGGTGCCCAAAGGAACTTGAATCTG 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AGTTGTTTCCGTTCATATTCACAAAAATAGAAGAAAGGTGCCCAAAGGAACTTGAATCTG 1021
Query 1126 TCAGAAAGCAATACCCTTTTCAATCTTTGAAGTTTCTTCCGCAAACATTGAGGCTAACCT 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TCAGAAAGCAATACCCTTTTCAATCTTTGAAGTTTCTTCCGCAAACATTGAGGCTAACCT 1081
Query 1186 TTGCAGAAGGGATTCAAATGCTTAAGGAAGCTGGCGAGGAGGTTGATCCTCTTGGTGATC 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 TTGCAGAAGGGATTCAAATGCTTAAGGAAGCTGGCGAGGAGGTTGATCCTCTTGGTGATC 1141
Query 1246 TAAATACAGAATCTGAGAGGAAACTTGGCCAGCTTGTTCTGGAAAAGTACAAGACGGAGT 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 TAAATACAGAATCTGAGAGGAAACTTGGCCAGCTTGTTCTGGAAAAGTACAAGACGGAGT 1201
Query 1306 TCTACATGCTGCATCGCTATCCATCGGCTGTCAGACCGTTCTACACTATGCCCTATGAAA 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TCTACATGCTGCATCGCTATCCATCGGCTGTCAGACCGTTCTACACTATGCCCTATGAAA 1261
Query 1366 ATGATTCTAACTACAGCAACTCTTTCGATGTCTTCATCAGAGGAGAGGAGATCATGTCAG 1425
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1262 ATGATTCTAACTACAGCAACTCGTTCGATGTCTTCATCAGAGGAGAGGAGATCATGTCAG 1321
Query 1426 GAGCTCAACGTATCCATGACCCAGAACTCTTGGAGAAGCGCGCAAGAGAATGCGGCATTG 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1322 GAGCTCAACGTATCCATGACCCAGAACTCTTGGAGAAGCGCGCAAGAGAATGCTGCATTG 1381
Query 1486 ATGTCAAGACAATATCCACGTACATTGATGCATTCAGGTACGGTGCACCACCTCACGGTG 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 ATGTCAAGACAATATCCACGTACATTGATGCATTCAGGTACGGTGCACCACCTCACGGTG 1441
Query 1546 GATTCGGAGTGGGGCTGGAGCGTGTGGTAATGCTCTTATGTGCCCTCAATAACATCCGCA 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 GATTCGGAGTGGGGCTGGAGCGTGTGGTAATGCTCTTATGTGCCCTCAATAACATCCGCA 1501
Query 1606 AAACTTCGCTATTCCCTCGTGACTCTCAAAGGCTCACTCCCTAATATCATTGCTCTTCCC 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 AAACTTCGCTATTCCCTCGTGACTCTCAAAGGCTCACTCCCTAATATCATTGCTCTTCCC 1561
Query 1666 TGGCGACTCTCAAAGGCTCGCTCCCTTAATATCTATCTTTGATAATTGTCCCCGCTCCCG 1725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 TGGCGACTCTCAAAGGCTCGCTCCCTTAATATCTATCTTTGATAATTGTCCCCGCTCCCG 1621
Query 1726 ATTTCTAAGTTAtttttttGGTGCAGTTCGTTAGGTGTTTAGTTATCTTTAAACTATGTA 1785
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1622 ATTTTTAAGTTATTTTATTGGTGCAGTTCGTTAGGTGTTTAGTTATCTTTAAACTATTTA 1681
Query 1786 TGTGTTGTAA 1795
||||||||||
Sbjct 1682 TGTGTTGTAA 1691
Score = 99.0 bits (53), Expect = 1e-19
Identities = 61/65 (94%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 40 CTGGAGAAGAGATGGTGGGATCAGAGGTTTTGGAGGAATGTGGAGAAAAAATAAGCAAGA 99
||||||||||||||||||||||||||||||||||||||| |||||| || || |||||||
Sbjct 20 CTGGAGAAGAGATGGTGGGATCAGAGGTTTTGGAGGAATCTGGAGAGAAGATGAGCAAGA 79
Query 100 AAGAG 104
|||||
Sbjct 80 AAGAG 84
> Ahg491623 jgi|Araly1|491623|fgenesh2_kg.7__1056__AT4G31180.1
Length=1761
Score = 1279 bits (692), Expect = 0.0
Identities = 1201/1441 (83%), Gaps = 58/1441 (4%)
Strand=Plus/Plus
Query 248 GGCTGTTGAGGGAAAAGAGCT-CACTGATGTGAGCAACTTGGTTGAAGAGATTGTGGGGT 306
|||||||||||||||||| | || ||||||||| | ||| | |||||||| |||| |
Sbjct 266 GGCTGTTGAGGGAAAAGA-TTGGACCGATGTGAGCGATTTGATGGAAGAGATGGTGGAAT 324
Query 307 CAGAGGTTTC-GATCAGAGGTCGACTGCACAAGAATCG-CTTA-GTCGGTACCAAATT-- 361
|||||| ||| ||||||||| ||| |||||| ||||| | | ||| || ||||||
Sbjct 325 CAGAGG-TTCTGATCAGAGGCCGAGTGCACATTAATCGTCCAACGTC--TAGCAAATTGG 381
Query 362 -GTTTGTGATCTTGAGGGAAAGTGGATTC-ACGGTTCAATGCGT-G---G----T-GGAG 410
|||| |||||||||||||||||||| || || ||||| ||||| | | | ||||
Sbjct 382 GGTTTTTGATCTTGAGGGAAAGTGGA-TCAACTGTTCAGTGCGTGGTTCGCCAATCGGAG 440
Query 411 GAGACCAGAGTTGGTGCAAACATGATTAAATTTGT-CAAGCAGCTGAGTCGTGAATCTGT 469
|||||| ||| ||||| |||||| ||||| | | | ||||||||||||| |||||| |
Sbjct 441 AAGACCAAAGTGGGTGCCAACATGGTTAAA-TACTCCGAGCAGCTGAGTCGCGAATCTTT 499
Query 470 TGTTGA-GCTTATCGGTGTCGTC--TCTCACCCTAAGAAGCCTCTCACAGGAACCACCCA 526
||| || | |||||||||||||| ||| ||| ||| ||||||| || ||||| || ||
Sbjct 500 TGTCGATG-TTATCGGTGTCGTCGTTCT-TCCC-AAGGAGCCTCTGACGGGAACTACGCA 556
Query 527 GCAGGTTGAAATACATGTCAGAAAAATGTACTGCCTCAGCAGATCCTTGCCAAATTTACC 586
||||||||| || || || |||||| |||||||| ||| || | ||||| |||| |||||
Sbjct 557 GCAGGTTGAGATTCAAGTGAGAAAAGTGTACTGCATCAACAAAGCCTTGGCAAAATTACC 616
Query 587 ACTT-GTTGTGGAGGATGCTGCTCGTAGTGAATCAGATATTGAAAAATCT-GGCAAGGA- 643
|||| | ||| |||||||||||||| |||||| ||||||| ||||||||| | | ||
Sbjct 617 ACTTAG-TGTCGAGGATGCTGCTCGGAGTGAAGCAGATATCGAAAAATCTCTTC-A-GAC 673
Query 644 TGGCAAA-CAAGCTGCTCGTGTCCTTCAGGACACACGTTTGAATAATAGGGTTCTTGACA 702
| | ||| | ||||||||||||| |||||| |||||||||||| ||||||| || |||
Sbjct 674 T-GAAAAGCCAGCTGCTCGTGTCAATCAGGATACACGTTTGAATCATAGGGTGCTCGACC 732
Query 703 TCAGAACACCGGCTAATCAAGCCATCTTCCGTA-TTCAGTGCCAAG-TCCAAATTGCGTT 760
||||||||||||||||||||||||||||||| | |||||||||||| | ||||| | ||
Sbjct 733 TCAGAACACCGGCTAATCAAGCCATCTTCCG-ACTTCAGTGCCAAGTTGAAAATT-CTTT 790
Query 761 CAGAGAATACTTACA-ATCCAAGGGGTTTCTTGAAATCCACACACCGAAATTGATCGCTG 819
||||||| | || | || ||||| ||| ||| |||||||||||| ||| |||| ||||
Sbjct 791 CAGAGAAAAATT-GATATTCAAGGATTTTGTTGGAATCCACACACCAAAACTGATGGCTG 849
Query 820 GCAGTAGTGAAGGAGGTTCTGCTGTGTTTAGGTTGGACTACAAAGGGCAGCCTGCTTGTC 879
| ||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||
Sbjct 850 GTAGTAGTGAAGGAGGTTCTGCTGTATTTAGATTGGAATACAAAGGGCAACCTGCTTGTC 909
Query 880 TGGCTCAGTCTCCTCAGCTTCATAAGCAGATGGCGATATGTGGTGACATGCGACGCGTCT 939
| || ||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||
Sbjct 910 TAGCCCAGTCTCCTCAGCTTCACAAGCAAATGGCAATATGTGGTGACTTGCGACGCGTCT 969
Query 940 TTGAGGTTGGTCCTGTTTTCAGAGCTGAAGACTCCTTCACTCATAGACACCTGTGTGAAT 999
||||||| |||||||||||||| || |||||||| ||||||||||||||| |||||||||
Sbjct 970 TTGAGGTAGGTCCTGTTTTCAGGGCAGAAGACTCGTTCACTCATAGACACTTGTGTGAAT 1029
Query 1000 TCGTTGGTCTTGATGTGGAGATGGAGATTCG-AATGCACTACTCTGAGATAATGGATCTT 1058
||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||
Sbjct 1030 TCGTTGGTCTTGATGTGGAGATGGAGATTCGGAAA-CACTATTCTGAGATAATGGACCTT 1088
Query 1059 GTGGGGGAGTTGTTTCCGTTCATATTCACAAAAATAGAA-GAAAGGTGCCCAAAGGAACT 1117
|||| ||||| ||| ||| |||||||| | | ||| |||| |||| ||||||| |
Sbjct 1089 GTGGACGAGTTATTTGTGTTTATATTCACTAGCTT-GAACGAAAAGTGCAAAAAGGAA-T 1146
Query 1118 TG-AATCTGTCAGAAAGCAATACCCTTTTCAATCTTTGAAGTTTCTTCCGCAAACATTGA 1176
|| || |||| |||||||||||||| ||| || ||||||||||||| || |||||||||
Sbjct 1147 TGGAAGCTGTTAGAAAGCAATACCCATTTGAACCTTTGAAGTTTCTACCAAAAACATTGA 1206
Query 1177 GGCTAACCTTTGCAGAAGGGATTCAAATGCTTAAGGAAGCTGGCGAGGAGGTTGATCCTC 1236
||||||| |||| ||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct 1207 GGCTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGGAGGTTGATCCTC 1266
Query 1237 TTGGTGATCTAAATACAGAATCTGAGAGGAAACTTGGCCAGCTTGT-TCTGGAAAAGTAC 1295
|||| ||||| || || ||||||||||| ||||| ||||||||||| | |||||||||||
Sbjct 1267 TTGGCGATCTGAACACTGAATCTGAGAGAAAACTCGGCCAGCTTGTAT-TGGAAAAGTAC 1325
Query 1296 AAGACGGAGTTCTACATGCTGCATCGCTATCC-ATCGGCTGTCAGACCGTTCTACACTAT 1354
|| || |||||||| || |||||||| ||||| | ||| || || || |||||||| ||
Sbjct 1326 AACACTGAGTTCTATATTCTGCATCGGTATCCTAA-GGCAGTTAGGCCTTTCTACACAAT 1384
Query 1355 GCCCTATGAAAATGATTCTAACTACAGCAACTCTTTCGATGTCTTCATCAGAGGAGAGGA 1414
| | | || || || || |||||||||||||| ||||||||||||||||| |||||
Sbjct 1385 GACTTGTGCTGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTCATCAGAGGTGAGGA 1444
Query 1415 GATCATGTCAGGAGCTCAACGTATCCATGA-CCCAGAACTCTTGGAG-AAGCGCGCAAGA 1472
|||||| ||||||||||||||| ||||| | ||||||| |||||||| || || ||| |
Sbjct 1445 GATCATATCAGGAGCTCAACGTGTCCAT-ATCCCAGAAATCTTGGAGCAA-CGTGCAGGG 1502
Query 1473 GAATGCGGCATTGATGTCAAGACAATATCCACGTACATTGATGCATTCAGGTACGGTGCA 1532
|||| ||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||
Sbjct 1503 GAATTCGGCATTGATGTCAAGACAATTTCCACATACATTGATTCATTCAGGTATGGTGCA 1562
Query 1533 CCACCTCACGGTGGATTCGGAGTGGGGCTGGAGCGTGTGGTAATGCTCTTATGTGCCCTC 1592
|| || ||||||||||| ||||||||||||||||| ||||| ||||| || |||| ||
Sbjct 1563 CCTCCACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGGACTG 1622
Query 1593 AATAACATCCGCAAAACTTCGCTATTCCCTCGTGACTCTCAAAGGCTCACTCCCTAATAT 1652
|| |||||||| ||||| || || |||||||||||| |||||||||| | |||||||||
Sbjct 1623 AACAACATCCGGAAAACATCCCTCTTCCCTCGTGACCCTCAAAGGCTTGCACCCTAATAT 1682
Query 1653 C 1653
|
Sbjct 1683 C 1683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71381119130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5