BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G26880.1

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492113 jgi|Araly1|492113|fgenesh2_kg.7__1546__AT4G26880.1         399    6e-111


> Ahg492113 jgi|Araly1|492113|fgenesh2_kg.7__1546__AT4G26880.1
Length=420

 Score =  399 bits (216),  Expect = 6e-111
 Identities = 240/252 (95%), Gaps = 0/252 (0%)
 Strand=Plus/Plus

Query  208  AACCCTGAGATATGTACCCCCTACGGAGGGGGAGGAAGCAACTCGACGATGACATGCTGC  267
            |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct  169  AACCCTGAGATATGTACCCTATACGGAGGGGGAGGAAGCAACTCGACGATGACATGCTGC  228

Query  268  AACAATAAGTGCATAGACGTGTCCAGTGACGACAATAACTGTGGCGCGTGTAAGAACAAA  327
            ||||| ||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct  229  AACAACAAGTGCATAGACGTGGCCAGTGACAACGATAACTGTGGCGCGTGTAAGAACAAA  288

Query  328  TGCAAGTTCTCACAGACGTGTTGTCGCGGCCAATGTGTTTACGTAGCTTACGATAAACGC  387
            |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct  289  TGCAAGTTCTCACAGACGTGTTGTCGCGGCCAATGTGTTTACGTGGCTTACGACAAACGC  348

Query  388  CATTGTGGACAGTGTAACCATCCGTGTGAGCTGGGCGAGTTCTGCGTCTACGGTCTATGT  447
            |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct  349  CATTGTGGACAGTGTAACCATCCGTGTGAGCTCGGCGAGTTATGCGTCTACGGTCTCTGT  408

Query  448  AACTATGCGTGA  459
            ||||| ||||||
Sbjct  409  AACTACGCGTGA  420


 Score =  246 bits (133),  Expect = 9e-65
 Identities = 157/168 (93%), Gaps = 3/168 (2%)
 Strand=Plus/Plus

Query  1    ATGGCCTTCGTGAAGCTACTCGTGTCCATTGCAATAACAACCGCAATCACAATCGCAGTC  60
            |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGGCCCTCATGAAGCTACTCGTGTCCATCGCAATAACAACCGCAATCACAATCGCAGTC  60

Query  61   ATCACAACCATAACCAACAATAC-A--ACCACCATTAGAGAGTACACAAGCTTTGATGCA  117
            |||||||||| |||||||| ||| |  |||||||||||||||||||||||||||||||||
Sbjct  61   ATCACAACCAGAACCAACATTACAACCACCACCATTAGAGAGTACACAAGCTTTGATGCA  120

Query  118  CCGAGTACGCCGACTATAAGGCCGAACCGGTTATTGGCTCAAAAGGAA  165
            |||||| |||||||||||||||||||||||||  ||||||||||||||
Sbjct  121  CCGAGTGCGCCGACTATAAGGCCGAACCGGTTCCTGGCTCAAAAGGAA  168



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16597681215


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5