BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26890.1
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492112 jgi|Araly1|492112|fgenesh2_kg.7__1545__AT4G26890.1 1832 0.0
Ahg495591 jgi|Araly1|495591|fgenesh2_kg.8__1407__AT5G55090.1 568 6e-161
> Ahg492112 jgi|Araly1|492112|fgenesh2_kg.7__1545__AT4G26890.1
Length=1532
Score = 1832 bits (992), Expect = 0.0
Identities = 1223/1335 (92%), Gaps = 14/1335 (1%)
Strand=Plus/Plus
Query 234 ATGGAGATTAATTGGACAAGAGGACCAATCATCGGTCGAGGCTCTACCGCCACTGTCTCT 293
|||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||
Sbjct 210 ATGGAGATTAATTGGAAAAGAGGACAAATCATCGGTCGAGGCTCCACCGCCACTGTCTCA 269
Query 294 ATAGCAATCTCAAGCTCCGGTGAGCTCTTCGCCGTCAAATCTGCCGACTTATCTTCTTCG 353
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 270 ATAGCAATCTCAAGCTCCGGTGAGATCTTCGCCGTTAAATCTGCCGACTTATCTTCTTCA 329
Query 354 TCCTTGTTGCAGAAAGAGCAATCAATCTTGTCTACATTGAGCTCTCCTCACATGGTCAAA 413
|| || |||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 330 TCGTTCTTGCAGAAAGAGCAATCATTCTTGTCTACATTGAGCTCTCCTCACATAGTCAAG 389
Query 414 TACATAGGCACTGGTTTAACGCGCGAGAGCAACGGATTGGTGTACAATATACTGATGGAA 473
||||| ||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 390 TACATCGGCTCTGGTTTAACGTACGAGAACAATGGATTGGTGTACAATATACTGATGGAG 449
Query 474 TACGTTTCTGGTGGAAATCTTCACGATTTAATCAAAAATTCCGGCGGTAAGTTGCCGGAG 533
|||||||| || || | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 450 TACGTTTCCGGCGGGAGTCTTCACGATTTAATCAAAAATTCCGGCGGGAAGTTGCCGGAG 509
Query 534 CCGGAGATAAGATCATACACTCGTCAGATTCTTAACGGTTTGGTGTATCTTCACGAGAGA 593
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 510 CCGGAGATAAGATCATACACGCATCAAATTCTTAACGGTTTGGTGTATCTTCACGAGAGA 569
Query 594 GGGATTGTTCACTGCGACTTGAAGAGCCATAACGTTCTGGTTGAGGAAAATGGCGTTTTG 653
||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 570 GGGATTGTTCACTGCGATTTGAAGAGCCAGAACGTTCTGGTGGAGGAAAACGGCGTTTTG 629
Query 654 AAAATCGCCGACATGGGTTGTGCTAAATCGGTTGACAAGTCGGAATTTTCCGGTACACCG 713
||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct 630 AAAATCGCCGACATGGGTTGTGCTAAATCAGTTGGCAAGTCGGAATTATCCGGTACACCG 689
Query 714 GCGTTTATGGCCCCAGAAGTTGCTCGTGGTGAAGAACAGAGGTTTCCGGCTGATGTGTGG 773
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 690 GCGTTTATGGCCCCGGAAGTTGCTCGTGGTGAAGAACAGAGGTTTCCAGCTGATGTGTGG 749
Query 774 GCTTTGGGATGTAC-GATGATCGAGATGATGACTGGATCAAGCCCTTGGCCGGAGTTAAA 832
||||||||||| || | ||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 750 GCTTTGGGATGCACAG-TGATCGAGATGATGACTGGATCAAGTCCTTGGCCCGAGCTAAA 808
Query 833 CGACGTCGTTGCTGCAATGTATAAGATTGGATTTTCAGGCGAGTCGCCGGCGATTCCCGC 892
|||||||||||||||||||||||||||||| || || || |||||||||| |||||| |
Sbjct 809 CGACGTCGTTGCTGCAATGTATAAGATTGGCTTCTCTGGTGAGTCGCCGGAGATTCCTGG 868
Query 893 GTGGATATCGGATAAAGCTAAAGACTTTCTGAAGAATTGTTTAAAGGAAGATCAAAAACA 952
|||||||||||| |||||||||||||||||||| |||||||| |||||||||| ||||||
Sbjct 869 GTGGATATCGGAGAAAGCTAAAGACTTTCTGAATAATTGTTTGAAGGAAGATCCAAAACA 928
Query 953 GAGATGGACTGTGGAAGAATTACTTAAACATCCATTTCTTGATGACGACGAAGAATCTCA 1012
||||||||||||||||||||| ||||||||| ||||||| || ||||| |||||||||||
Sbjct 929 GAGATGGACTGTGGAAGAATTGCTTAAACATTCATTTCTCGACGACGAAGAAGAATCTCA 988
Query 1013 GACAAGTGATTGTTTGAAGAACAAGACTTCTTCTCCAAGCACTGTGTTGGATCAACGATT 1072
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 989 GACAAGCGATTGTTTGAAGAACAAGACTTCTTCTCCAAGCACAGTGTTGGATCAACGATT 1048
Query 1073 TTGGGATTCATGCGAAAGCTCCAAAAGTCACTTAGTTTCGATTGATCATGAAGACCCTTT 1132
|||||||||||||||| ||| |||| ||||||| ||||||| ||||| |||||||||||
Sbjct 1049 CTGGGATTCATGCGAAACCTCGAAAACTCACTTAATTTCGATGGATCACGAAGACCCTTT 1108
Query 1133 TGCTGAATACTCGGAATCTTTGGATTCACCGGCTGATCGGATCGAGAAACTCGCCGGAGA 1192
|||||| ||||||||||||| || |||||||||| | |||||||||||||||||||||||
Sbjct 1109 TGCTGATTACTCGGAATCTTGGGGTTCACCGGCTAAACGGATCGAGAAACTCGCCGGAGA 1168
Query 1193 TGAGTTTTCAAGCTTACTTGATTGGGATACGGAAGACGATGGCGGATGGATTCAAGTGAG 1252
||| |||| |||||||| ||||||| ||| ||||| || ||||| ||||||||||||||
Sbjct 1169 TGAATTTTTAAGCTTACCCGATTGGGTTACTGAAGAAGACGGCGGGTGGATTCAAGTGAG 1228
Query 1253 AGGCGA-GAAACATAAAGAAACCGAGAAACGCGACGGCGACGAAGACGTGATTTGCGTTG 1311
|||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 AGGCGACGAAT-ATGAAGAAACCGAGAAACGCGACGGCGACGAAGACGTGATTTGCGTTG 1287
Query 1312 AAGCAACGTCATCGTCGCAAACGATTGAAGAAGTTGAAGATTGGATTTCGAATCAAGACA 1371
|| ||||||| |||| | | ||||||| ||||||||||||||||||||||||||
Sbjct 1288 AAACAACGTC---GTCG-AT--G---GAAGAAGATGAAGATTGGATTTCGAATCAAGACA 1338
Query 1372 GCTTGTTCTCGGAATATTCCTCTGACGACATCATTAATAATTTCTACTCTAATGTTGCTA 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 GCTTGTTCTCGGAATATTCCTCTGACGACATCATTAATAATTTCTACTCTAATGTTGCTA 1398
Query 1432 TTCAAGGAAATTTAATTGCATTTCATTATTGTACTGATGAAGATGAAAATGTATCCATAA 1491
||||||||||||||||||||||| |||||| || |||||||| | |||||||||||||||
Sbjct 1399 TTCAAGGAAATTTAATTGCATTTTATTATTTTAGTGATGAAGGTAAAAATGTATCCATAA 1458
Query 1492 AGAATATGTTTCGTACTAATAACAAACATTTGTTTTTCAAATTGCAAGCTCATGTTAAAT 1551
||||| |||||| |||||| || ||| | ||||||| |||||||||||||||| || |||
Sbjct 1459 AGAATTTGTTTCATACTAAAAA-AAATAATTGTTTTCCAAATTGCAAGCTCATTTTTAAT 1517
Query 1552 TCACTAACCAAGTCT 1566
||||||||||||||
Sbjct 1518 CCACTAACCAAGTCT 1532
Score = 248 bits (134), Expect = 9e-65
Identities = 186/209 (89%), Gaps = 12/209 (6%)
Strand=Plus/Plus
Query 1 GGAGGAGAAGAAATCAACAACTTAAGAATAAAGAATGTCGTATCCGACTTCGAACCAAAG 60
||||||||||||||||| ||||| |||||||||||| || | |||||||| |||||||||
Sbjct 1 GGAGGAGAAGAAATCAAGAACTT-AGAATAAAGAATATCTTCTCCGACTTTGAACCAAAG 59
Query 61 CCCCATGCCAAAGTCACATACACACACTTCTACATACCCTAAACACACACACTC-GAA-T 118
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 60 CCCCATGCCAAAGTCACATACACACACTTCTACATACCCTAAACACACACACACAGAAAT 119
Query 119 ACATAAA-CTCTT-T-TCTATATATA-A-A--CTTCTTATAAGCCATTTGCTTAAACAAC 171
|||||| || || | | |||||||| | | |||||| ||||||||||||||||||||
Sbjct 120 ACATAATTCTTTTATATATATATATATATAAGCTTCTTCTAAGCCATTTGCTTAAACAAA 179
Query 172 TCTCAAGT-aaaaaaaaaaaaTCAACAAT 199
|||||||| |||||||||||| |||||||
Sbjct 180 TCTCAAGTCAAAAAAAAAAAA-CAACAAT 207
> Ahg495591 jgi|Araly1|495591|fgenesh2_kg.8__1407__AT5G55090.1
Length=1324
Score = 568 bits (307), Expect = 6e-161
Identities = 939/1228 (76%), Gaps = 107/1228 (9%)
Strand=Plus/Plus
Query 246 TGGACAAGAGGACCAATCATCGGTCGAGGCTCTACCGCCACTGTCTCTA-TAGCAATCTC 304
|||| ||||||||||||||| || |||||||| || || |||||||| | | |||||| |
Sbjct 16 TGGATAAGAGGACCAATCATAGGCCGAGGCTCAACAGCTACTGTCTC-ACTTGCAATCAC 74
Query 305 AAGCTCCGGTGAGC-TCTTCGCCGTCAAATCTGCCGACTTATCTTCTTCGTCCTTGTTGC 363
|| ||||||||| | |||||||||||||||| |||| || ||||| ||| | || ||||
Sbjct 75 AAACTCCGGTGA-CTTCTTCGCCGTCAAATCCACCGAGTTTTCTTCATCGGCGTTTTTGC 133
Query 364 AGAAAGAGCAATCAATCTTGTCTACA-TTGAGCTCTCCTCACATGGTCAAATACATAGGC 422
||| ||| ||||| || || || | | |||||||||||| | || ||||| ||||| ||
Sbjct 134 AGAGAGAACAATCGATTTTATCGA-ATTTGAGCTCTCCTTATATAGTCAAGTACATTGGT 192
Query 423 ACTGGTTTAACG-CGCGAGAGCAACGGATTGGTGTACAATATAC-TGATGGAATACGTTT 480
|| | ||||| || |||| | || |||| |||| ||| | | || ||||||| ||||
Sbjct 193 TCTAATGTAACGACG-GAGAACGACAAATTGATGTATAATCT-CTTGCTGGAATATGTTT 250
Query 481 CTGGTGGAAATCTTCACGATTTAATCAAAAATTCCGGCGGTAAGTTGCCGGAGCCGGAGA 540
| || || | | | |||||||| || || ||||||||||| |||||||||||||||| ||
Sbjct 251 CCGGCGGGAGTATGCACGATTTGATGAAGAATTCCGGCGGGAAGTTGCCGGAGCCGGTGA 310
Query 541 TAAGATCATACACTCGTCAGATTCTT-AACGGTTTGGTGTATCTTCACGA-GAGAGGGAT 598
| ||||| ||||| ||||||| | || || |||||| |||||||||| || | ||| ||
Sbjct 311 TTAGATCCTACACGCGTCAGA-TATTAAAAGGTTTGATGTATCTTCATGATCA-AGGTAT 368
Query 599 TGTTCACTGCGACTTGAAGAGCCATAACGTTCTGGTTGAGGAAAATGGCGTTTTG-AAA- 656
|||||| ||||| ||||||||||| || || | | | ||| | | | ||| |||
Sbjct 369 TGTTCATTGCGATTTGAAGAGCCAGAATGTGAT-GAT-CGGAGGA--GAG-ATTGCAAAG 423
Query 657 ATCGCCGACATGGGTTGTGCTAAATCGGT---------TGACAAGTCGGAATTTTCCGGT 707
|||| || |||| ||||||||| |||| ||| || | |||||||||||||
Sbjct 424 ATCGTTGATTTGGGCTGTGCTAAAACGGTGGAAGAGGATGAGAATTTGGAATTTTCCGGT 483
Query 708 ACACCGGCGTTTATGGCCCCAGAAGTTGCTCGTGGTGAAGAACAGAGGTTTCCGGCTGAT 767
||||||||||||||| | || ||||| || ||||||||||||||||| ||||| ||||||
Sbjct 484 ACACCGGCGTTTATGTCGCCGGAAGTAGCACGTGGTGAAGAACAGAGTTTTCCAGCTGAT 543
Query 768 GTGTGGGCTTTGGGATGTACGATGATCGAGAT-GATGACT-GGATCAAGCCCTTGGCCGG 825
|| ||||||||||| |||||| |||| ||||| | | ||| ||| |||| ||||||||||
Sbjct 544 GTATGGGCTTTGGGGTGTACGGTGATAGAGATGGCT-ACTGGGA-CAAGTCCTTGGCCGG 601
Query 826 AGTTAAACGACGTCGTTGCTGCAATGTATAAGATTGGATTTTCA--GGCGAGTCGCCGGC 883
|||||||||||||||||||||| || ||||||||||| ||| || || ||||||||||
Sbjct 602 AGTTAAACGACGTCGTTGCTGCGATTTATAAGATTGG-TTT-CACCGGTGAGTCGCCGGA 659
Query 884 GATTCCCGCGTGGATATCGGATAAAGCTAAAGACTTTCTGAAGAATTGTTTAAAGGAA-G 942
|||||| | ||| |||||||||||| | |||||||| ||| ||| ||||| | | || |
Sbjct 660 GATTCCGGTTTGGTTATCGGATAAAGGTCAAGACTTTTTGAGGAAATGTTTGA-GAAAAG 718
Query 943 AT-CAAAAACAGAGATGGACTGTGGAAGAATTACTTAAACATCCATTTCTTGATGACGAC 1001
|| ||||| |||||||||| ||| ||||||| ||| ||||||| ||||||||||| ||
Sbjct 719 ATTCAAAA-CAGAGATGGAGTGTTCAAGAATTGCTTCAACATCCGTTTCTTGATGAAGAA 777
Query 1002 GAAGA--ATCTCAGACAAGTGATTGTTTGAAGAACAAGACTTCTTCTCCAAGCACTGTGT 1059
|| || | | || | || ||||| |||| | ||| |||||||| |||||||
Sbjct 778 GACGACGA-CGAAG-CTCGTAATTGTCTGAATT-C-----TTCATCTCCAAGTACTGTGT 829
Query 1060 TGGATCAACGATTTTGGGATTCATGCGAAAGCTCCAA-AAGTC-ACTT-AGTTTCGATTG 1116
|||||||| | |||||||||| ||| |||| || ||| ||||| | || | || | |
Sbjct 830 TGGATCAAGGTTTTTGGGATTTATGTGAAA-CTTCAAGAAGTCGA-TTCA-TTAA-AGCG 885
Query 1117 -ATCATGAAGACCCTTTTGCTGAATACT-CGGAAT--CTT-TGG-AT--T-C---ACCGG 1164
|||| |||||||| ||||| ||| || | ||| ||| ||| || | | |||||
Sbjct 886 GATCACGAAGACCCATTTGCA-AATTCTACA-AATTTCTTATGGGATGATTCGTTACCGG 943
Query 1165 CTGATCGGATCGAGAAACTCGCCGGAGATGAGTTTTCAAGCTTA-CTTGATTGGGATACG 1223
|||||||||| |||||||||||||||||||| ||| | | | || || ||||| |||
Sbjct 944 GTGATCGGATCAAGAAACTCGCCGGAGATGAGAATTCCGG-TGAACTAGAGTGGGAAACG 1002
Query 1224 GAAGACGATGGCGGATGGATTCAAGTGAGAGGCGAGAAACATAAAGAAACCGAGAAACGC 1283
|| || | |||||| |||| ||||| |||| || |||||| | || ||
Sbjct 1003 -AA--CGGT------TGGATTGAAGTTAGAGGAGAGA----TAGAGAAAC-GT-AA-CGA 1046
Query 1284 GACGGCGACGAAGACGTGATTTGCGTTGAAGCAACGTCATCGTCGCA--AAC--GAT-TG 1338
| | | ||||| | || |||||||||||||||||||| | | | || || ||
Sbjct 1047 -A-GA--A-GAAGATGAGAATTGCGTTGAAGCAACGTCATTGGAGGAGGAAGAAGAAGTG 1101
Query 1339 A-AGAAGTTGAAGA-TTGGAT-TTCGA--ATCAAGACAGCTTGTTCTCGGAATATTCCTC 1393
|| | |||| || |||||| || || | |||||||||||||||| |||||||||| |
Sbjct 1102 GGAGGATTTGA-GAATTGGATCTTGGATCAACAAGACAGCTTGTTCTTGGAATATTCCCC 1160
Query 1394 TGACGACATCATTAATAATTTCTACTCT 1421
||| |||| ||||||| |||| ||||||
Sbjct 1161 TGAGGACAACATTAATTATTTTTACTCT 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58735157790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5