BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26910.1
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492108 jgi|Araly1|492108|fgenesh2_kg.7__1541__AT4G26910.1 2410 0.0
Ahg495590 jgi|Araly1|495590|fgenesh2_kg.8__1406__AT5G55070.1 1295 0.0
> Ahg492108 jgi|Araly1|492108|fgenesh2_kg.7__1541__AT4G26910.1
Length=1759
Score = 2410 bits (1305), Expect = 0.0
Identities = 1433/1497 (96%), Gaps = 0/1497 (0%)
Strand=Plus/Plus
Query 5 TCTCATATGCGTTTACCGATCTTCTCGATTCTCCAATTCCAAACCCTAACATTTTGATTA 64
|||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TCTCGTATGCGTTTGCCGATCTTCTCGATTCTCCAATTCCAAACCCTATCATTTTGATTC 60
Query 65 GTCCTTCTGGGTTTCCACAGCCTTGAGAGATTCGGAACCAATGATGATGCGTGCTGTTAT 124
||||||| ||||||||||| ||||||||||||||| || ||||||| |||||||||||||
Sbjct 61 GTCCTTCCGGGTTTCCACAACCTTGAGAGATTCGGTACAAATGATGTTGCGTGCTGTTAT 120
Query 125 AAGGAGAGCTGCCAGTAATGGCTCTTCTCCTTCGTTATTCGCAAAATCACTGCAGTCTTC 184
|||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct 121 AAGGAGAGCTGCCAGTAAAGGCTCTTCTCCTTCGTTATTCGGAAAATCACTGCAATCTTC 180
Query 185 TCGTGTTGCTGCATCTTCCCCTAGCTTGCTATCAGGTTCAGAAACAGGGGCATATCTGCA 244
||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||
Sbjct 181 TCGTGTTGCTGCATCTTCCCCAAGCTTGCTAAGAGGTTCAGAAACAGGGGCATTTCTGCA 240
Query 245 TCGTGGAAATCATGCTCATAGCTTTCATAACCTTGCTTTGCCAGCAGGGAACTCGGGCAT 304
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGTGGAAATCATGCTCGTAGCTTTCATAACCTTGCTTTGCCAGCAGGGAACTCGGGCAT 300
Query 305 CTCGAGGTCGGCGAGTTTAGTTTCTTCAACCCTGCAAAGATGGGTCAGGCCTTTTTCAGC 364
|||||| || |||||||||||||| || ||||| |||||||||||||||||||||||| |
Sbjct 301 CTCGAGATCAGCGAGTTTAGTTTCCTCTACCCTACAAAGATGGGTCAGGCCTTTTTCATC 360
Query 365 TGAAACTGGAGATACCGTGGAAGCAGTTGTGCCTCATATGGGGGAATCAATTACTGATGG 424
||||| ||||||||| |||||||| |||||||||||||||||||||||||| || |||||
Sbjct 361 TGAAAGTGGAGATACTGTGGAAGCTGTTGTGCCTCATATGGGGGAATCAATCACCGATGG 420
Query 425 CACCTTGGCCACCTTTCTGAAGAAACCTGGTGAGAGAGTCCAGGCTGATGAGGCTATTGC 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CACCTTAGCCACCTTTCTGAAGAAACCTGGTGAGAGAGTCCAGGCTGATGAGGCTATTGC 480
Query 485 ACAAATTGAAACTGATAAGGTGACAATAGATATTGCTAGCCCAGCAAGTGGTGTAATCCA 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACAAATTGAAACTGATAAGGTGACAATAGATATTGCTAGCCCAGCAAGTGGTGTAATCCA 540
Query 545 AGAGTTTCTAGTCAACGAAGGAGATACTGTAGAACCAGGAACCAAGGTCGCTATTATATC 604
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 AGAGTTTCTAGTCAAAGAAGGAGATACGGTAGAACCAGGAACCAAGGTCGCTATTATATC 600
Query 605 AAAGTCTGAGGATACTGCATCTCAGGTTACCCCCTCTCAGAAGATACCAGAGACAACTGA 664
||||||||||||| |||||||||| ||||||||||| ||||||||||||||| || ||||
Sbjct 601 AAAGTCTGAGGATGCTGCATCTCATGTTACCCCCTCCCAGAAGATACCAGAGGCATCTGA 660
Query 665 TACCAAACCTTCTCCTCCTGCTGAAGATAAGCAGAAGCCCAGAGTGGAAAGTGCTCCTGT 724
| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 TGCCAAGCCTTCTCCTCCTGCTGAAGATAAGCAGAAGCCCAAAGTGGAAAGTGCTCCTGT 720
Query 725 AGCAGAGAAACCCAAAGCACCATCCTCACCACCTCCACCCAAACAGTCTGCTAAAGAACC 784
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 AGCAGAGAAACCCAAAGCACCATCCTCACCACCTCCACCCAAACAATCTGCTAAAGAACC 780
Query 785 GCAGCTTCCTCCTAAGGAAAGAGAAAGACGGGTTCCGATGACAAGACTTCGGAAACGAGT 844
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| | ||
Sbjct 781 GCAGCTCCCTCCTAAGGAAAGAGAAAGACGGGTTCCTATGACAAGACTTCGTAAAAGGGT 840
Query 845 TGCAACAAGATTGAAAGACTCTCAAAATACTTTCGCGTTGCTGACAACTTTCAATGAAGT 904
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 841 TGCAACAAGATTGAAAGACTCTCAAAATACTTTCGCATTGCTGACAACTTTCAATGAAGT 900
Query 905 TGATATGACAAATTTGATGAAGCTCCGATCCCAATACAAGGATGCATTTTATGAAAAGCA 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 TGATATGACAAATTTGATGAAGCTCCGATCCCAATACAAGGATGCATTTTATGAAAAACA 960
Query 965 TGGAGTGAAGTTGGGGCTTATGTCTGGATTTATTAAAGCTGCTGTTAGCGCCCTTCAGCA 1024
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 961 TGGAGTGAAGTTGGGGCTTATGTCTGGATTCATTAAAGCTGCTGTTAGTGCCCTCCAGCA 1020
Query 1025 TCAACCAGTTGTAAATGCAGTTATTGACGGGGATGATATCATATACAGAGACTATGTGGA 1084
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1021 TCAACCAGTTGTAAATGCAGTTATCGATGGGGATGATATCATATACAGAGACTATGTGGA 1080
Query 1085 TATCAGTATCGCTGTTGGTACCTCTAAGGGACTTGTAGTACCAGTCATAAGAGGTGCTGA 1144
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TATCAGTATTGCTGTTGGTACCTCTAAGGGACTTGTAGTACCAGTCATAAGAGGTGCTGA 1140
Query 1145 TAAAATGAACTTTGCCGAGATAGAGAAGACGATAAACTCACTTGCCAAGAAGGCAAATGA 1204
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1141 TAAAATGAACTTTGCCGAGATAGAGAAGACGATAAACACACTTGCGAAGAAGGCAAATGA 1200
Query 1205 AGGAACCATATCCATAGATGAGATGGCTGGCGGATCATTCACCGTTTCAAATGGCGGTGT 1264
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1201 AGGAACCATATCCATAGATGAGATGGCTGGAGGATCATTCACCGTTTCAAATGGCGGTGT 1260
Query 1265 CTATGGAAGTCTCATAAGCACTCCGATCATTAATCCTCCTCAGTCTGCCATACTCGGCAT 1324
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1261 CTATGGAAGTCTCATAAGCACTCCGATCATTAACCCTCCTCAGTCTGCTATACTCGGTAT 1320
Query 1325 GCACTCGATTGTGTCACGTCCAATGGTAGTAGGAGGAAGCGTAGTGCCTAGACCAATGAT 1384
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1321 GCACTCGATTGTGTCACGTCCAATGGTTGTAGGAGGAAGCGTAGTGCCAAGACCAATGAT 1380
Query 1385 GTATGTCGCACTTACGTATGATCACAGGCTGATTGATGGTAGAGAGGCTGTGTACTTCCT 1444
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1381 GTACGTCGCACTTACGTATGATCACAGGCTGATTGATGGTAGAGAGGCTGTCTACTTCCT 1440
Query 1445 GCGCCGTGTCAAGGATGTTGTGGAGGATCCACAAAGGCTTCTTCTTGACATATAAAA 1501
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GCGCCGTGTCAAGGATGTTGTGGAGGATCCACAAAGGCTTCTTCTTGACATATAAAA 1497
Score = 246 bits (133), Expect = 4e-64
Identities = 237/281 (84%), Gaps = 32/281 (11%)
Strand=Plus/Plus
Query 1535 TTTTGCCAGTTATAGACCTGCAGTGTCTTTAAAACGTTT-GG-GGGTAACAACAA-TTCT 1591
||||||||||||||||||||||||||||||||||||||| || |||||||||||| || |
Sbjct 1498 TTTTGCCAGTTATAGACCTGCAGTGTCTTTAAAACGTTTGGGAGGGTAACAACAATTTTT 1557
Query 1592 TATCTTTCAAGTTTCTTTACAGTTTCCCGAGTATTGCGGGATTGGAAGAATAGGCCTCAG 1651
| ||||||||||||||||||||||||| || |||||| |||| || ||| ||||||||
Sbjct 1558 TCTCTTTCAAGTTTCTTTACAGTTTCCTGAATATTGCCGGAT-GG--GAA--GGCCTCAG 1612
Query 1652 TGTCTACGTTCTTACTTT-TTACACAGTTTGATACAGATATGTTCAATTTTGACTGAATA 1710
|||||| ||||||| ||| |||||| || ||||||||||||||||||||||
Sbjct 1613 TGTCTAAGTTCTTA-TTTGTTACAC---------CA--TATGTTCAATTTTGACTGAATA 1660
Query 1711 A--GATACCCTTTTGAGGTTTTTCGGA-TTGAATGATTT--C----CTAATAAGATCTAG 1761
| | |||||||||||||| |||| | ||||||||||| | ||||||| ||||||
Sbjct 1661 AACGG-ACCCTTTTGAGGTTCTTCG-ACTTGAATGATTTTTCATGACTAATAACATCTAG 1718
Query 1762 ACGAGAGAGAAGTTACATGCTTTCTTTGTATTAAATAGAAA 1802
|||||||||||| | |||||||||||||||||||||||||
Sbjct 1719 ACGAGAGAGAAGCAATATGCTTTCTTTGTATTAAATAGAAA 1759
> Ahg495590 jgi|Araly1|495590|fgenesh2_kg.8__1406__AT5G55070.1
Length=1787
Score = 1295 bits (701), Expect = 0.0
Identities = 1024/1180 (87%), Gaps = 22/1180 (2%)
Strand=Plus/Plus
Query 334 CCCTGCAAAGATGGGTCAGGCCTTTTTCAGCTGAAACTGGAGATACCGTGGAAGCAGTTG 393
|||||||||||||||||||||| |||||| |||| | ||| ||| ||||||||| ||||
Sbjct 413 CCCTGCAAAGATGGGTCAGGCCCTTTTCATCTGATAGTGGGGATGTCGTGGAAGCTGTTG 472
Query 394 TGCCTCATATGGGGGAATCAATTACTGATGGCACCTTGGCCACCTTTCTGAAGAAACCTG 453
|||| || ||||| |||||||| || ||||| ||| | ||||||||||||||||||||||
Sbjct 473 TGCCACACATGGGTGAATCAATCACCGATGGAACCCTAGCCACCTTTCTGAAGAAACCTG 532
Query 454 GTGAGAGAGTCCAGGCTGATGAGGCTATTGCACAAATTGAAACTGATAAGGTGACAATAG 513
|||| ||||| | |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 533 GTGACAGAGTAGAAGCTGATGAGGCTATTGCACAAATTGAAACTGACAAGGTTACAATAG 592
Query 514 ATATTGCTAGCCCAGCAAGTGGTGTAATCCAAGAGTTTCTAGTCAACGAAGGAGATACTG 573
|||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||
Sbjct 593 ATATTGCTAGCCCAGCAAGTGGAGTGATCCAAGAGTTTCTAGTCAAGGAAGGAGACACTG 652
Query 574 TAGAACCAGGAACCAAGGTCGCTATTATATC-AAAGTCTGAGGATACTGCATCTCAGGTT 632
| |||||||||| |||||| |||| || || | | |||| |||| ||| ||||| |||
Sbjct 653 TTGAACCAGGAAACAAGGTTGCTAGAATTTCTACA-TCTGCGGATGCTGTGTCTCATGTT 711
Query 633 ACCCCCTCTCAGAAGATACCAGAGACAA-CTGATACCAAACCTTCTCCTCCTGCTGAAGA 691
| ||||| | |||| |||||||| || ||| | |||| ||||||||||||||
Sbjct 712 GCACCCTCAGAAAAGACACCAGAGA-AACCTGCTCCCAAGCCTTCTCCTCCTGC------ 764
Query 692 TAAGCAGAAGCCCAGAGTGGAAAGTGCTCCTGTAGCAGAGAAACCCAAAGCACCAT--CC 749
| | ||||||||| ||| |||||| || || |||||||||||||| ||||||| ||
Sbjct 765 T--G-AGAAGCCCAAAGTTGAAAGTACTAAAGTTGCAGAGAAACCCAAGGCACCATCACC 821
Query 750 TC-ACCACCTCCACCCAAACAGTCTGCTAAAGAACCGCAGCTTCCTCCTAAGGAAAGAGA 808
| ||| || || ||||||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct 822 GCAACCGCCACCGCCCAAACAGTCAGCTAAAGAACCGCAGCTCCCTCCTAAGGATAGGGA 881
Query 809 AAGACGGGTTCCGATGACAAGACTTCGGAAACGAGTTGCAACAAGATTGAAAGACTCTCA 868
|||||||||||| |||||||||||||| ||||| || ||||| || |||||||||||||
Sbjct 882 AAGACGGGTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGCTGAAAGACTCTCA 941
Query 869 AAATACTTTCGCGTTGCTGACAACTTTCAATGAAGTTGATATGACAAATTTGATGAAGCT 928
||| ||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 942 AAACACTTTTGCTTTGCTGACAACTTTCAATGAAGTTGATATGACTAATCTGATGAAGCT 1001
Query 929 CCGATCCCAATACAAGGATGCATTTTATGAAAAGCATGGAGTGAAGTTGGGGCTTATGTC 988
|||||| || ||||||||||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 1002 CCGATCTCAGTACAAGGATGCTTTTTTTGAAAAGCACGGAGTGAAGTTGGGGCTTATGTC 1061
Query 989 TGGATTT-ATTAAAGCTGCTGTTAGCGCCCTTCAGCATCAACCAGTTGTAAATGCAGTTA 1047
||| ||| |||||||| |||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 1062 TGG-TTTCATTAAAGCCGCTGTTAGCGCCCTCCAGCACCAACCAGTAGTAAATGCAGTTA 1120
Query 1048 TTGACGGGGATGATATCATATACAGAGACTATGTGGATATCAGTATCGCTGTTGGTACCT 1107
| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1121 TCGACGGGGACGATATCATTTACAGAGACTACGTGGATATCAGTATCGCTGTTGGTACCT 1180
Query 1108 CTAAGGGACTTGTAGTACCAGTCATAAGAGGTGCTGATAAAATGAACTTTGCCGAGATAG 1167
||||||| ||||| || ||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 1181 CTAAGGGTCTTGTGGTTCCAGTCATAAGAGATGCTGATAAAATGAACTTTGCTGACATAG 1240
Query 1168 AGAAGACGATAAACTCACTTGCCAAGAAGGCAAATGAAGGAACCATATCCATAGATGAGA 1227
|||| || |||||| ||||| |||||||| ||||||||||||||||| || || ||||
Sbjct 1241 AGAAAACAATAAACGGTCTTGCTAAGAAGGCTAATGAAGGAACCATATCAATCGACGAGA 1300
Query 1228 TGGCTGGCGGATCATTCACCGTTTCAAATGGCGGTGTCTATGGAAGTCTCATAAGCACTC 1287
|||| || ||||||||||| || |||||||| ||||||||||||||||| ||||||||||
Sbjct 1301 TGGCAGGAGGATCATTCACAGTATCAAATGGTGGTGTCTATGGAAGTCTTATAAGCACTC 1360
Query 1288 CGATCATTAATCCTCCTCAGTCTGCCATACTCGGCATGCACTCGATTGTGTCA-CGTCCA 1346
| ||||| || |||||||||||||| || || || ||||| ||||||||| || ||||||
Sbjct 1361 CTATCATCAACCCTCCTCAGTCTGCTATTCTTGGAATGCATTCGATTGTG-CAACGTCCA 1419
Query 1347 ATGGTAGTAGGAGGAAGCGTAGTGCCTAGACCAATGATGTATGTCGCACTTACGTATGAT 1406
||||| || |||||||||||||| || || |||||||||||||||||||| || || |||
Sbjct 1420 ATGGTTGTGGGAGGAAGCGTAGTACCGAGGCCAATGATGTATGTCGCACTGACTTACGAT 1479
Query 1407 CACAGGCTGATTGATGGTAGAGAGGCTGTGTACTTCCTGCGCCGTGTCAAGGATGTTGTG 1466
|| |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1480 CATAGGCTGATTGATGGAAGAGAGGCTGTGTATTTCCTGCGCCGTATCAAGGATGTTGTG 1539
Query 1467 GAGGATCCACAAAGGCTTCTTCTTGACATAT-A-AAAGAT 1504
|| ||||| || ||||||||||| ||||||| | ||||||
Sbjct 1540 GAAGATCCTCAGAGGCTTCTTCTCGACATATGATAAAGAT 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68143448305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5