BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26920.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492107 jgi|Araly1|492107|fgenesh2_kg.7__1540__AT4G26920.1 900 0.0
> Ahg492107 jgi|Araly1|492107|fgenesh2_kg.7__1540__AT4G26920.1
Length=1593
Score = 900 bits (487), Expect = 0.0
Identities = 604/661 (91%), Gaps = 6/661 (1%)
Strand=Plus/Plus
Query 728 ACAACTTGCTCCAAGCATCAAAACGTTTGGTTCACATATTTTGCTCCGGTACGTGTGGGG 787
||||||||||| ||| ||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 923 ACAACTTGCTCGAAGTATCAAGGCATATGGTTCACTTATTTTGCTCCGGTACGTGTGGGG 982
Query 788 TAATCGGGAACCGAGGGAGGTGGCTCGGTGCGGGTCGAAGGTTTGACGTCAGAGTTTCCA 847
|||||||| ||| | ||||| |||||||||||||||||| ||||||||||||||||| ||
Sbjct 983 TAATCGGGTACCAATGGAGGCGGCTCGGTGCGGGTCGAACGTTTGACGTCAGAGTTTTCA 1042
Query 848 GTCTAGAGAGTCGGGACATGATAAGGCACCCTTATGGTATTATTAGCGCTAGCGGTTTGA 907
|| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1043 CTCGAGAGAGTCCAGACATGATAAGGCACCCTTGTGGTATTATTAGCGCTAGCGGTTTGG 1102
Query 908 CTAAAATACATGCTAAACCGGAAATACTATTTCCTTTAATCTACGGTGTAAAGAAACTAG 967
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||
Sbjct 1103 CTAAAATACATGCTAAACCGGAAATGCTATTTCCTTTCATCTACGGTGTGAAGAAACGAG 1162
Query 968 AGATACAT-AACCACTTACGATTATCTGGAAATGATTTAAAACAAGTCCTTCGGATCACA 1026
||||| | ||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1163 AGATA-TTCAACCACTTACGATTATCTGGAAATGGTTTAAAACAAGTGCTTCGGATCACA 1221
Query 1027 AGAGACGACATTACTTCGAGGAATGACGTCTCCCTATTCAGTTTCCGGCTGAATAATTCT 1086
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 AGAGACGACACTACTCCGAGGAATGACGTCTCCCTATTCAGTTTCCGGCTGAATAATTCT 1281
Query 1087 ACGGAGGTGTTTTTGCTTCAAGAAGCATACAATGAGGCATCATCGTCGATGGTGATCCAC 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 ACGGAGGTGTTTTTGCTTCAAGAAGCATACAATGAGGCATCATCGTCGATGGTGATCCAC 1341
Query 1147 TCCATACTTGACGTGTCATCTCTTGCG-AAGATTATAAACGGTGACCGTTCCTACTCCTT 1205
|| || ||||||| |||||||||| || || |||||||||||||| |||| | |||| |
Sbjct 1342 TCGATTCTTGACGAGTCATCTCTT-CGGAAAATTATAAACGGTGATAGTTCGTTCTCCAT 1400
Query 1206 TACCTATCCGTGTGGATTCACCATAATGCCGGGCCAAAACTCCGGCGATGAAGACGCTGG 1265
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1401 TACCTATCCGTGTGGATTCACCATAATGCCCGGCCAAAACTCAGGCGATGAAGAAGCTGG 1460
Query 1266 ATGTGTTGTGTCTGTTGGATTTCTGACGATTGCAACTGAAGAGATTGTAGCGAATACACT 1325
|||||||||||| |||||||||| | |||||| |||||||| |||||||||||||||| |
Sbjct 1461 ATGTGTTGTGTCGGTTGGATTTCAGGCGATTGTAACTGAAGCGATTGTAGCGAATACAAT 1520
Query 1326 GGTGAGTGATGTGGAGAGAGGAATTTATCTGCTACTATTACAAATTTCGAGAATGTCTTA 1385
| ||||| ||||||||| || | |||||||| |||| |||||||||||||||||||||||
Sbjct 1521 GATGAGTAATGTGGAGA-AG-ACTTTATCTGATACTTTTACAAATTTCGAGAATGTCTTA 1578
Query 1386 G 1386
|
Sbjct 1579 G 1579
Score = 839 bits (454), Expect = 0.0
Identities = 590/652 (90%), Gaps = 23/652 (4%)
Strand=Plus/Plus
Query 78 GCAGTTCGAGAATGCTGTTTCGCGGTCTGACA-ATGAGACACTCAATGCCTTCACAATGT 136
|||||||||||||||| |||||||||| |||| | |||||||||| | ||||||||||||
Sbjct 60 GCAGTTCGAGAATGCTCTTTCGCGGTCAGACAGA-GAGACACTCACTTCCTTCACAATGT 118
Query 137 TATTGGA-TTTTTGGAGA-AATCAATT-CCCGAACGTGTCCTCGTACTTGCTTAACTT-A 192
||| ||| ||||||| || || ||||| ||| ||| | |||||||||| ||||||||| |
Sbjct 119 TATCGGATTTTTTGG-GACAA-CAATTACCC-AACTTTTCCTCGTACTCGCTTAACTTAA 175
Query 193 TGGGTGGTCTTGGCATGTATAGTCAACGAAATTATTGCTTTAGCAACGCTCGAGTCTCCT 252
|||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 176 TGGG-GGTCTTGGCATGTATAGTCAACGAAATTATTGCTTTGGCAACGCCCGAGTCTCCT 234
Query 253 TTGTGGAGGAGATCACAACGTG-----A-AGAGATGCTGACTCTGAACGAATACTACTCT 306
|||||||| ||||||||| ||| | ||||||||||| ||||||||| |||||||||
Sbjct 235 TTGTGGAGTAGATCACAATGTGAAAACATAGAGATGCTGAATCTGAACGAGTACTACTCT 294
Query 307 CGATTCTTTCCTTGGTACGCAAAAAACGTCCCAAGGTTTGTCCATGAGGCGTCAAGAGCT 366
| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 295 CAATTCTTTCCTTGGTATGCAAAAAATGTCCCAAGGTTTTTCCATGAGGCGTCAAGAGCT 354
Query 367 TCTGAAGTAATCCACGTTGATGCTTCATGGCTTTTGACAAAACTTAAAAACCCTATGCGT 426
|||| |||||||| ||||||||||||||||||| ||| ||||||| |||| ||| |||||
Sbjct 355 TCTGCAGTAATCCGCGTTGATGCTTCATGGCTTGTGAGAAAACTTGAAAATCCTGTGCGT 414
Query 427 TGGGTGACTATTTTCCCATCACTCGTTGGAAATGTGTCAATCGAATCAAGCAACGACGAT 486
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TGGGTGAGTATTTTCCCATCACTCGTTGGAAATGTGTCAATCGAATCAAGCAACGACGAT 474
Query 487 GTTAGGATGATCATTGATATGGAGTTTCTGACATTAATTACCCCGGTCATTCCGACCCGA 546
|||| | ||| ||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 475 GTTA--A-GATGATTGATATGGAGTTTCTAACATTAATCACCCCGGTAATTCCGACCCGA 531
Query 547 AAAGTAAAAGTTCTCCGATATTGTCACCGTATAGCAAATGATACATGGATTATAGCGGAT 606
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 532 AAAATAAAAGTTCTCCGATATTGTCACCGTATAGGAAATGATACATGGATTATAGCAGAT 591
Query 607 ATCTCCATGTACTTAAGCTCCTATTCAGACGATTTACGACCTGAGTTTCTCAGATTTCCT 666
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 ATCTCCATGTATTTAAGCTCCTATTCAGACGATTTACGACCTGAGTTTCTCAGATTTCCT 651
Query 667 TCTGGATTTATTATTAAACATGTAGCAA--GGATATTCAGAG-TAACTAATT 715
||||||||||||||| ||||| | ||| ||||||||| || |||| ||||
Sbjct 652 TCTGGATTTATTATTCAACATCTTCCAAATGGATATTCAAAGGTAAC-AATT 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5