BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26930.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492106 jgi|Araly1|492106|fgenesh2_kg.7__1539__AT4G26930.1 1554 0.0
Ahg472077 jgi|Araly1|472077|fgenesh2_kg.1__2031__AT1G18570.1 76.8 3e-13
> Ahg492106 jgi|Araly1|492106|fgenesh2_kg.7__1539__AT4G26930.1
Length=1149
Score = 1554 bits (841), Expect = 0.0
Identities = 1077/1183 (91%), Gaps = 47/1183 (4%)
Strand=Plus/Plus
Query 1 ATGATCGTGTACGGTGGGGGAGCATCCGAGGACGGTGAAGGTGGAGGGGTGGTTCTGAAG 60
|||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1 ATGATCGTATACGGTGGGGGAGCATCCGAGGACGGTGGAGGTGGACGGGTGGTTCTGAAG 60
Query 61 AAAGGGCCATGGACGGTGGCCGAGGACGAGACACTGGCGGCTTACGTACGGGAATACGGT 120
|||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||
Sbjct 61 AAAGGGCCATGGACGGTGGCGGAGGACGAGACTTTGGCGGCTTATGTACGGGAATACGGT 120
Query 121 GAAGGGAACTGGAATTCTGTTCAGAAGAAGACATGGCTGGCTAGGTGTGGCAAGAGCTGC 180
||||||||||||||| |||||||||||||||| ||||||||| |||| || |||||||||
Sbjct 121 GAAGGGAACTGGAATGCTGTTCAGAAGAAGACGTGGCTGGCTCGGTGCGGTAAGAGCTGC 180
Query 181 CGCCTCCGCTGGGCTAACCACTTACGACCTAATCTCAGGAAAGGCTCCTTCACCCCCGAG 240
||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 181 CGCCTCCGCTGGGCTAACCACCTCCGACCTAATCTCAGGAAAGGCTCCTTCACCCCTGAG 240
Query 241 GAAGAACGTCTCATCATACAACTCCACTCTCAGCTAGGCAACAAATGGGCTCGCATGGCT 300
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 241 GAAGAACGTCTCATCATACAACTCCATTCTCAGCTCGGCAACAAATGGGCTCGCATGGCT 300
Query 301 GCTCAGTTACCAGGCAGAACAGATAACGAGATCAAGAACTACTGGAACACGAGGTTGAAA 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTCAGTTACCAGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACGAGGTTGAAA 360
Query 361 CGCTTCCAACGCCAAGGCCTCCCTCTCTACCCTCCAGAATA-TTCCCAAAACAATCATCA 419
|||||||||||||||||||||||||| |||||||||| ||| ||||| || |||||||||
Sbjct 361 CGCTTCCAACGCCAAGGCCTCCCTCTATACCCTCCAG-ATATTTCCCCAAGCAATCATCA 419
Query 420 ACAACAAATGTATCCTCAACAG---------CCCTCCTCACCTCTCCCGTCCCAAACACC 470
|||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 420 ACAACAAATGTATCCTCAACAGCCCAACACACCCTCCTCACCTCTCCCGTCCCCAACACC 479
Query 471 TGCTTCTTCCTTTACCTTTCCTCTCCTCCAACCGCCTTCTCTGTGTCCCAAACGTTGTTA 530
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 CGCTTCTTCTTTTACCTTTCCTCTTCTCCAACCGCCTTCTCTGTGTCCCAAACGTTGTTA 539
Query 531 TAACACTGCCTTCTCTCCCAAGGCCTCATATATTTCTTCTCCAACCAATTTCCTTGTCTC 590
|||||||||||||||||||||||||| | || | | | | |||
Sbjct 540 CAACACTGCCTTCTCTCCCAAGGCCTC-T-TA-------T-------A----C-T-TCT- 576
Query 591 GTCTCCGACCTTTCTTCACACCCA-TTCCTCTCTTTCCTCCTATCAGTCTACCAATCCGG 649
||||||||||||||| ||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 577 -TCTCCGACCTTTCTTAACACCCATTTCC-CACTTTCCTCCTATCAGTCTACCAATCCGG 634
Query 650 TTTACTCCATGAAACATGAGCTCTCTTCAAACCAAATTCCATACTCTGCCTCTTTAGGAG 709
|||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct 635 TTTACTCCATGAAACATGAGCTCTCTTCAAACCACATTCCATTCTCCACCTCTTTAGGAG 694
Query 710 TCTATCAAGTAAGCAAGTTCTCAGACAATGGGGATTGTAACCAAAACCTGAACACCGGTT 769
|||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||| |||
Sbjct 695 TCTATCAAGTGAGCAAGTTCTTAGACAATGGTGATTGTAACCAAAACCTTAACACCAGTT 754
Query 770 TGCATACAAATACCTGTCAGCTGTTAGAGGATCTTATGGAGGAGGCCGAGGCTCTAGCTG 829
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 755 TGCATACAAATACCTGCCAGCTGTTAGAGGATCTTATGGAGGAGGCCGAGGCTTTAGCTG 814
Query 830 ATAGCTTTCGTGCTCCTAAGCGGAGACAAATCATGGCTGCGCTTGAGGacaacaacaaca 889
||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 815 ATAGCTTTCGTGCTCCTAAGCGGAGACAACTCATGGCTGCTCTCCAGGACAACAACAACA 874
Query 890 acaacaacTTTTTCTCGGG-AGGTTTCGGACATCGTGTTTCTTCCAACAGTCTATGTTCC 948
|| || |||||||| || ||| |||||| ||| ||||||||||| ||||| ||||
Sbjct 875 AC------TTCTTCTCGGGTAGTTTT-GGACATTGTGGTTCTTCCAACAATCTAT-TTCC 926
Query 949 -TTGCAAGGTTTAACACCAAAGGAAGATGAGTCTCTCCAGATGAACACAATGCAAGATGA 1007
|||||||||||||||||||||||||| |||| |||||||||||| || |||||||||||
Sbjct 927 CTTGCAAGGTTTAACACCAAAGGAAGACGAGTGTCTCCAGATGAATACGATGCAAGATGA 986
Query 1008 GGACATAACAAAGCTTCTTGACTGGGGAAGTGAAAGTGAAGAAATCTCAAACGGGCAATC 1067
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 987 GGACATAACAAAGCTTCTTGACTGGGGAAGTGAAAGCGAAGAGATCTCAAACGGGCAATC 1046
Query 1068 CTCTGTGATAACAACAGAGAACAACCTTGTCCTTGACGATCACCAGTTCGCTTTTCTGTT 1127
||||| ||||||||||||| ||| |||||||||||||||||||||||||||||| |||||
Sbjct 1047 CTCTGCGATAACAACAGAGGACAGCCTTGTCCTTGACGATCACCAGTTCGCTTTGCTGTT 1106
Query 1128 TCCAGTTGATGATGACACCAACAACTTGCCAGGGATCTGCTAG 1170
||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1107 TCCAGTTGACGATGACACCAACAACTTGCCAGGGATCTGCTAG 1149
> Ahg472077 jgi|Araly1|472077|fgenesh2_kg.1__2031__AT1G18570.1
Length=1467
Score = 76.8 bits (41), Expect = 3e-13
Identities = 66/77 (86%), Gaps = 6/77 (8%)
Strand=Plus/Plus
Query 277 GGCAACAAATGGGCTCGC-ATGGCTGC-TCAG-TTACCAGGCAGAACAGATAACGAGATC 333
|||||||||||| | ||| || ||| | | | |||||||| ||||| ||||||||||||
Sbjct 497 GGCAACAAATGGTC-CGCTATAGCT-CGT-GGATTACCAGGAAGAACCGATAACGAGATC 553
Query 334 AAGAACTACTGGAACAC 350
|||||||||||||||||
Sbjct 554 AAGAACTACTGGAACAC 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5