BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26940.1
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492104 jgi|Araly1|492104|fgenesh2_kg.7__1537__AT4G26940.1 2479 0.0
> Ahg492104 jgi|Araly1|492104|fgenesh2_kg.7__1537__AT4G26940.1
Length=1592
Score = 2479 bits (1342), Expect = 0.0
Identities = 1516/1596 (95%), Gaps = 28/1596 (2%)
Strand=Plus/Plus
Query 1 TTCCACGCACCAAAGGCAAAGACACAAAGCCACGGCTTTTCTCTCTTGTCGTTTTCCACA 60
|||| |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1 TTCCGCGCACCAAAGGC-AAGA-ACAAAGCCACGGCTTTTCTCTCTTGTCGTTTTCTTCA 58
Query 61 TACATTCGTCTTTTCATAGGATCAATCTAATATCACGATCTATACTTTCTCTGTTTACAT 120
||||||||||||||||||||||||||| | | | |||||||||||| ||||
Sbjct 59 TACATTCGTCTTTTCATAGGATCAATC-----T----A-C---ACTTTCTCTGTTAACAT 105
Query 121 TCTCGTTTCCGAGGAGAAAAGTCTCGATCTTCTGGATCTGGGGTTTGGTTTGGTTTGGGG 180
| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 106 TTTCGTTTCCGAGGAGAAAAGTCTCGATCTTTTGGATCT-GGG--AGGTTTGGTTTGGGG 162
Query 181 TTGACTCGGTTTTGACTCGGGACAAGTCGTCTCGTGAGATGGATGTCTCTCGTTTATTAG 240
||||||||||||||||||||||| ||||||||| ||||||||||| |||||| | ||||
Sbjct 163 TTGACTCGGTTTTGACTCGGGACGAGTCGTCTCTTGAGATGGATG--TCTCGTGT-TTAG 219
Query 241 TATCTCTTTGAGAGTCTGTCTTTCTGGGTTCAATAGATTCTTATAGTTTCGCTTAGAAAC 300
|| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 220 TAGCTCTTTGAGAGTCTGCCTTTCTGGGTTCAATAGA---TTATAGTTTCGCTTAGAAAC 276
Query 301 ACGCACAAAAAGATGTCGTTGAAGCATCATCACAGAGGATTAGAGCTCTCTGCTTCGAAG 360
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 A--CACACAAAGATGTCGTTGAAGCATCATCACAGAGGATTAGAGCTCTCTGCTTCGAAA 334
Query 361 AGTTTTGTCTCAAAGAAATGGACTTTATTTCTCTGTATCGGTTTCTTCTGCGCAGGAATT 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 335 AGTTTTGTCTCAAAGAAATGGACTTTATTTCTATGTATCGGTTTCTTCTGCGCAGGAATT 394
Query 421 CTCTTCTCCGACAGAATGTGGCCAGAGCCTGAATCCAATGTTGTATCAAGGGACACAGTA 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 395 CTCTTCTCCGACAGAATGTGGCCAGAGCCTGAAGCCAATGTTGTATCAAGGGACACAGTA 454
Query 481 GCATCAGATGAACGGCTGCGGTTAGAGTCTGAGGACTGTGATTCATCAAAAAAGGGTTTA 540
|| |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 455 GCGTCAGATGAGCGGCTGAGGTTAGAGTCTGATGACTGTGATTCATCAAAAAAGGGTTTG 514
Query 541 AAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAGTCCAGATGCAATTCAAACG 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 515 AAGCGTGAATCGAAAGACATCCTTGGAGAAGTTTACAAGAGTCCAGATGCAATTCAAACG 574
Query 601 CTTGATAAAACGATTTCAAAGCTGG-AAACAGAACTGGCCGATGCAAGAGCTGCGCAAGA 659
|||||||||||||||||||| |||| |||| ||| |||| | ||||||||||||||||||
Sbjct 575 CTTGATAAAACGATTTCAAATCTGGAAAAC-GAATTGGCGGCTGCAAGAGCTGCGCAAGA 633
Query 660 ATCTATCATGAATGGTTCACCAGTTTCTGATGACTTTAAGCTCCCTGAAACTGTCACTAA 719
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 634 ATCCATCATGAATGGTTCACCAGTTTCTGATGACTTTAAGCTTCCTGAAACTGTCACTAA 693
Query 720 AAGAAAGTATCTGATGGTTGTTGGTGTTAATACTGCGTTTAGCAGCAGAAAGCGCAGGGA 779
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 694 AAGAAAGTATCTGATGGTTGTTGGGGTAAATACTGCGTTTAGCAGCAGAAAGCGTAGGGA 753
Query 780 TTCAGTCCGTGCTACTTGGATGCCTCCCGGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TTCAGTCCGTGCTACTTGGATGCCTCCCGGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAA 813
Query 840 AGGGATCGTGATGCGGTTTGTGATAGGCCATAGTTCTACTCCCGGTGGAATTCTTGATAG 899
|||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 814 AGGGATTGTGATGCGGTTTGTGATAGGCCATAGTGCTACTCCTGGTGGAATTCTTGATAG 873
Query 900 AGCGATTCAGGCTGAAGAAAGTAAACATGGAGACTTCTTGAGGCTGGATCATGTTGAAGG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 AGCGATTCAGGCTGAAGAAAGTAAACATGGAGACTTCTTGAGGCTGGATCATGTTGAAGG 933
Query 960 TTATCTCGAGCTGTCAGCAAAGACTAAAACTTACTTTACCACGGCTTTTGCAATGTGGGA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TTATCTCGAGCTGTCAGCAAAGACTAAAACTTACTTTACCACGGCTTTTGCAATGTGGGA 993
Query 1020 TGCAGACTTCTACGTCAAAGTCGATGATGATGTGCATGTAAATATAGCCACGCTTGGAGC 1079
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 994 TGCAGACTTCTACGTGAAAGTCGATGATGATGTGCATGTAAATATAGCCACTCTCGGAGC 1053
Query 1080 AGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACC 1139
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1054 AGAATTAGCAAGATACCGGATGAAGCCTCGAGTCTACATTGGTTGCATGAAATCTGGACC 1113
Query 1140 TGTTCTTGCTCAGAAAGGAGTGAGATATCATGAACCCGAATACTGGAAATTTGGAGAAGA 1199
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1114 CGTTCTTGCTCAGAAAGGAGTGCGATATCATGAACCCGAATACTGGAAATTTGGAGAAGA 1173
Query 1200 GGGTAACAAATACTTCCGCCATGCCACAGGTCAGCTCTATGCAATATCCAGGGAGTTGGC 1259
||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1174 GGGTAACAAGTACTTCCGCCATGCCACTGGTCAGCTCTATGCAATTTCCAGGGAATTGGC 1233
Query 1260 GTCTTACATATCGATAAACCAAAACGTACTTCACAAATATGTGAATGAAGATGTCTCTTT 1319
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1234 GTCTTACATATCGATAAACCAAAACGTACTTCACAAATATGTGAATGAGGATGTCTCTTT 1293
Query 1320 AGGATCATGGTTTCTTGGATTAGATGTGGAGCATGTAGATGACCGTAGGCTATGTTGTGG 1379
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1294 AGGATCATGGTTTCTTGGATTAGATGTGGAACATGTAGATGACCGTAGGCTATGTTGTGG 1353
Query 1380 TACAACAGATTGTGAGTGGAAGGCGCAGGCGGGCAACATCTGTGTTGCCTCGTTCGATTG 1439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1354 TACAACAGATTGTGAGTGGAAAGCGCAGGCGGGCAACATCTGTGTTGCCTCGTTCGATTG 1413
Query 1440 GAGCTGCAGTGGGATTTGTAGATCAGCGGATAGGATGAAGGATGTTCATCGTAGGTGTGG 1499
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1414 GAGCTGCAGTGGGATTTGTAGATCAGCGGATCGGATGAAGGATGTTCATCGGAGGTGTGG 1473
Query 1500 AGAAGGTGAAAAGGCCCTTCTGGCTGCATCTTTCTGAACACAATAACTAAAGAAACACAT 1559
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 AGAAGGTGAAAAGGCTCTCCTGGCTGCATCTTTCTGAACACAATAACTAAAGAAACACAT 1533
Query 1560 TGAGGAAGAAGAGTACAGAGACAAATCCGCTCGACA 1595
||||||||||||||||||||||||||||||||||||
Sbjct 1534 TGAGGAAGAAGAGTACAGAGACAAATCCGCTCGACA 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76028129020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5