BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26950.1
Length=596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492103 jgi|Araly1|492103|fgenesh2_kg.7__1536__AT4G26950.1 817 0.0
> Ahg492103 jgi|Araly1|492103|fgenesh2_kg.7__1536__AT4G26950.1
Length=523
Score = 817 bits (442), Expect = 0.0
Identities = 501/528 (95%), Gaps = 9/528 (2%)
Strand=Plus/Plus
Query 14 AGAGTTTTTGTTTAATCGAAGATCTTTCTTGGTCGTCATGTTATGTTTTGTAGAAGCAGG 73
||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1 AGAGTTTTTGTATAATCGAAGATCTTTCATGGTCGTC-TGTTATGTTTTGTAGAAGCAGC 59
Query 74 TGAGTATCAATGGAGAAGAGCTACATGAAGCATGAGCTATGGGGAGATGGAGATTTTCAA 133
||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||
Sbjct 60 TGAGTATCAATGGAGAAGAACTACATGAGGCATGAGCTATGGAGAGATGGAGATTTTCAA 119
Query 134 GAAGATGATGTGTGGGATGTTCTTGATGGATATCAATCACCGTTTATG-AT--TAGTAGT 190
||||| |||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 120 GAAGAAGATGTGTGGGATGTTCTTGATGGATATCAATCACCGTTTATGAATAGTATTAGT 179
Query 191 AACCATACGACTAAACCTTCTTTCTCAACCCAAACTTTACTTCCAAGCGAACCTAGAATG 250
|||||||| |||||| ||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 180 AACCATACCACTAAAACTTCTTTCTCAACACAAACTTTACTTCCAAGTGAACCAAGAATG 239
Query 251 ATTCCTGAGAGGCAGAGGACAGAAGGAATGGCACCTATGAGACAACAGTCGGTC-CCTGT 309
||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 240 ATTCCTGAGAGGCAGAGGATAGAAGGAATGGCACCTATGAGACAACAGTCGG-CTCCTGT 298
Query 310 CAATGTCCCTGATTGGTCAATGGTTCAAAGAAAGAAGACAAAGAAAGTTGTTGATGATGA 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CAATGTCCCTGATTGGTCAATGGTTCAAAGAAAGAAGACAAAGAAAGTTGTTGATGATGA 358
Query 370 GAATGTGTCACCGGAGGAATATTTCCTGCGGCGCAGTCGATCATCATCGTCGTCTTCAGT 429
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 359 GAATGTGTCACCTGAGGAATATTTCCTGCGGCGCAGTCGATCATC---GTCGTCTTCGGT 415
Query 430 TATGGAAGGAGTTGGAAGAAAACTGAAAGGAAGAGATTTGAGCAAAGTAAGGAATGCAAT 489
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TATGGAAGGAGTTGGAAGGAAACTGAAAGGAAGAGATTTGAGCAAAGTAAGGAATGCAAT 475
Query 490 ATTGAAGCAAACTGGATTTCTTGAGTAGACCAAGATTGTATAAATGTT 537
|||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 476 ATTGAAGCAAACTGGATTTCTTGAGTAGACTAAGATTGTATAAATGTT 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21824996908
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5