BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26960.1
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492102 jgi|Araly1|492102|fgenesh2_kg.7__1535__AT4G26960.1 664 0.0
> Ahg492102 jgi|Araly1|492102|fgenesh2_kg.7__1535__AT4G26960.1
Length=560
Score = 664 bits (359), Expect = 0.0
Identities = 506/574 (88%), Gaps = 22/574 (4%)
Strand=Plus/Plus
Query 4 AATTGTTCCCCAATCGAGTCTGCTCCGTCCGGATCAAAAAGAATCCGACCCGGT-AACGG 62
||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| |||||
Sbjct 1 AATTGTTCCCCGATCGAGTCTGCTCCGTCTGGATC--AAA-AATCCGACCCGGTAAACGG 57
Query 63 GTCCCTCACAATCCTCTTCTA--CACCATG--AAAGGAATCTCCAGATCGCCGGTGAGAA 118
| | | ||| | || | || ||| ||| ||||||||||||||||||||||||
Sbjct 58 AT-ATTTA-AAT-AT-GTC-AGGAACAATGACAAACGAATCTCCAGATCGCCGGTGAGAA 112
Query 119 GAAACGACGGTTTCCATCGTTACATGAAACCAGGGGCTCTGGCTCAGATCCGTAACGCTA 178
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 113 GAAACGACGGTTTCCACCGTTACTTGAAACCAGGGGCTCTGGCTCAGATCCGTAATTCTA 172
Query 179 GAATCAACAACGCTAGATCCAATTTC-CCCCTGACTCGTTCTCTCTCGGACCCAGTCGAC 237
|||||||| ||||||||||| | | |||||||||||||||||| |||| |||||| ||
Sbjct 173 GAATCAAC---GCTAGATCCAACT-CGCCCCTGACTCGTTCTCTCACGGATCCAGTCCAC 228
Query 238 CCGCCTTCATCATCTTCCGAGAGTCCTATTGCCGCGACGCCGCAGACGATAACTATGGAT 297
|||| |||||| ||| ||||||||||| |||| ||| | |||||||| |||||||||||
Sbjct 229 CCGCTTTCATCTTCTACCGAGAGTCCTGTTGCTGCGCCTCCGCAGACCATAACTATGGAC 288
Query 298 CAGATGCCCCATCTCTTGAGCAAGATCTACGGTCCGTATCGAATCGGTAGGAAGAAACTT 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 289 CAGATGCCCCATCTCTTGAGCAAGATCTATGGTCCGTATCGAATCGGTAGGAAGAAATTT 348
Query 358 GGCCCTGCGAGATCTGCGATGGTGAAATTGAACCCTTCTCCAAATTCTATACTCGAATCT 417
||||||||||||||||||||| |||| ||||||||||| ||||| |||||||| ||||||
Sbjct 349 GGCCCTGCGAGATCTGCGATGATGAATTTGAACCCTTC-CCAAACTCTATACTTGAATCT 407
Query 418 ATTAATGGTAACAGCAACGTACTGAACAATAATGATGTTTTAGTTGCTCATTGAATGAAG 477
| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||
Sbjct 408 ACTAATGGTAACAGCAACGTATTGAGTAATAATGATGTTTTAGTTGCTCATTGAATTAAG 467
Query 478 CTTAAAGTGAAATTTCCCTTCTTC-TGTAGATTACTTTGTAACTGATACTCTTTGGGGAA 536
||||| || | ||||||||||| |||||||||||||||||||| ||| ||||||||||
Sbjct 468 CTTAA-GTTCA-TTTCCCTTCTTTATGTAGATTACTTTGTAACTGTTACACTTTGGGGAA 525
Query 537 ATATCTTCACTACTCATCAGACTTTTATAAATAC 570
||||||||| |||||||||||||||||||| |||
Sbjct 526 ATATCTTCAATACTCATCAGACTTTTATAATTAC 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23864946042
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5