BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26965.1
Length=986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492100 jgi|Araly1|492100|fgenesh2_kg.7__1533__AT4G26965.1 1301 0.0
> Ahg492100 jgi|Araly1|492100|fgenesh2_kg.7__1533__AT4G26965.1
Length=908
Score = 1301 bits (704), Expect = 0.0
Identities = 848/913 (93%), Gaps = 27/913 (3%)
Strand=Plus/Plus
Query 32 TTGAGTTTTTGGATCATACGAAGAAGAAATCGGCGGGAGAAGCTATGTCGAGGCTATGGG 91
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct 1 TTGAGTTTGTGGATCATACGGAGAAGTAATCGGCGGGAGAAGCTATGTCGAGACTATGGG 60
Query 92 CGAGATTTGCGGGATTGTTCAGTAGCAAGAGTTTTATCGGAGTAGACAAGACTGGTAACA 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGAGATTTGCGGGATTGTTCAGTAGCAAGAGTTTTATCGGAGTAGACAAGACTGGTAACA 120
Query 152 AGTACTTTTCCAGAATGGAGGAGATTGACGGATTCGTGAAGGAGAAAAGATGGGTCAAGT 211
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 121 AGTACTTTTCCAGAATGGAAGAGATTGACGGATTGGTGAAGGAGAAAAGATGGGTTGTCT 180
Query 212 TTAGACGAGAGGAGGACCCAACCTCTATTCCTGTTGAATGGATTTGTTGGCTGAATGGGC 271
||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 181 TTAGAAGAGAGGAGGACCCAACCTCTATTCCTGTTGAATGGATATGTTGGCTAAATGGGC 240
Query 272 AGCGAAAAAGGGCTCCTACTCCTGAGGAAATGATTGAACTTGAAGCAAGGCGTGAGCGTG 331
|||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||
Sbjct 241 AGCGAAAAAGGGCTCCTACTCCAGCGGAAATGGTTGAACTTGAAGCAAGGCGTGAGCGTG 300
Query 332 TAAAGCTTAATGTTGCTCTTCTCAAGAAGGAAGAGGAGGAGAAGAAAGCCAGAGTAGGCA 391
| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 301 TGAAGCTTAATGTTGCTCTTCTCAAGAAAGAAGAGGAGGAGAAGAAAGCCAGAGAAGGCA 360
Query 392 CCGGACGCAAAATCACCATTGGTAAAGTTGATGGTCCAGATTTGACAAGCTTTGTTCGCC 451
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 CCGGACGCAAAATCACCATTGGTAAAGTTGACGGTCCAGATTTGACAAGCTTTGTTCGCC 420
Query 452 AATTTCCACCAGATTCAAAAGGTGGTGAACCAGAGGAAGCTAGTGAAGAAGCAGATAAAT 511
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 421 ACTTTCCACCGGATTCAAAAGGTGGTGAACCAGAGGAAGCTAGCGAAGAAGCAGATAAAT 480
Query 512 CAAGGGCCAAGGAACATGAACCCGAGATAGTTTCTGCAGAACCACCCGAACCAAAGACAA 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAAGGGCCAAGGAACATGAACCCGAGATAGTTTCTGCAGAACCACCCGAACCAAAGACAA 540
Query 572 CAGAGCCATCAGGATCTGGATCATCATTTAGGCCCGGGACATGGCAGCCACCATCCTAAA 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAGAGCCATCAGGATCTGGATCATCATTTAGGCCCGGGACATGGCAGCCACCATCCTAAA 600
Query 632 CACATCTCTCTTCACGCAGATGACAAACCAACATACTATTCAATTATTTTGTTTGTTGTA 691
|||||| |||||| | | ||| || |||| || ||||||||||
Sbjct 601 CACATCACTCTTC-------T--C---CCAG-AT--TATT---TT-----GTTTGTTGTA 637
Query 692 CTCTACACA-ACCGATTGGTTTGAGCCTTACAGATGAGCCATAAGACCAGAGAGCTTTTC 750
||| ||||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 638 CTCCACACATACCGATTGGTTTGAGCCTTACCGATGAACCATTAGACCAGAGAGCTTTTC 697
Query 751 AAGACCCTAAAATTGTGTCCTTTCACGCTGTCATTGAGGACTTAGAAGAGTCAAAATGAG 810
||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 698 AAGACCCTAAATTTGTGGCTTTTCACGCTGTCATTGAGGACTTAGAAGAGTCAAAATGAG 757
Query 811 AAGCCATCTTCTTATACTTTGTTTTGTTTAGGGTGTTTGTCTCTTGGCATAATGCTTGAG 870
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 AAGCCATCTTCTTATGCTTTGTTTTGTTTAGGGTGTTTGTCTCTTGGCATAATGCTTGAG 817
Query 871 ACTTTTAGCCTGCCTTGTCCTTCATAGCTGAAGAGGAGCCTAGC---TACCTTTTGTTTC 927
||||||||| |||||||||||||||||||||||| ||||||||| |||| || ||||
Sbjct 818 ACTTTTAGCTTGCCTTGTCCTTCATAGCTGAAGAAGAGCCTAGCAGCTACCCTTCGTTTT 877
Query 928 TCTTCGTTGACTT 940
|||||||||||||
Sbjct 878 TCTTCGTTGACTT 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36636123237
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5