BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26980.1
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492098 jgi|Araly1|492098|fgenesh2_kg.7__1531__AT4G26980.1 2021 0.0
Ahg492099 jgi|Araly1|492099|fgenesh2_kg.7__1532__AT4G26970.1 124 1e-27
> Ahg492098 jgi|Araly1|492098|fgenesh2_kg.7__1531__AT4G26980.1
Length=1354
Score = 2021 bits (1094), Expect = 0.0
Identities = 1279/1365 (94%), Gaps = 25/1365 (2%)
Strand=Plus/Plus
Query 27 AATATTC-CTCGATTAGAATCTCCGGCGATCAGAAATCTCGCGGTGAATTTTGATGGAAG 85
||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AATATTCAC-CGATTCGAATCTCCGGCGATCAGAAATCTCGCGGTGAAATTTGATGGAAG 59
Query 86 AAAAGCTGCCAAAATCGCTCAAGAATCTCGATTTGAATACGAATCGTGGTCGTGGACCAG 145
|| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||
Sbjct 60 AACAGCTGCCAAAATCGCTCAAGAATCTCGACTTGAATAGGAA------TCGTGGACCAA 113
Query 146 AGAATAAGATTCTTGTTTCAGCTTATGTATCTTCGTCACG---AATGTCTCCACTGAAAT 202
|||| ||||||||||||||||||||| |||| || ||||| |||||||||||||||||
Sbjct 114 AGAAGAAGATTCTTGTTTCAGCTTATCTATCCTCCTCACGAATAATGTCTCCACTGAAAT 173
Query 203 CAAAACCTCCATCTCTTGTGAGCTCATGTCTTGGTGTTATTGGGAAGCATTTGGAGGATA 262
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 174 CAAAACCTCCATCTCTTGTGAGCTTATGTCTTGGTGTTATTGGGAAGCATTTGGAGGAAA 233
Query 263 TGATTCGTTGTTTAGCTGAAATCTCTGTTATATTTCCTGCAGACATCAAGATGTCGATTG 322
|||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 234 TGATTCCTTGTTTAGCTGATATCTCTGTTATATTTCCTGCCGACATCAAGATGTCGATTG 293
Query 323 CAGCAATTGCTAGAAGAAAAAAGCTGCTGGATGATGATGTGATTATCTGTTTGGCTGACA 382
||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 294 CAGCAATTGCTAGAAGAAAAAAGCTACTGGATGATGATGTGATTACCTCTTTGGCTGACA 353
Query 383 GTTCCTGGGAAATTCTAGATGTTAGCGGTTCAGATGTTACGAATTTTGGCTTAGCTAAAG 442
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 354 GTTCCTGGGAAATTCTAGACCTTAGCGGTTCAGATGTTACGAATACTGGCTTAGCTAAAG 413
Query 443 TGGCAGAAATCTGCAAATCTCTCCGAGCTGTGGACATTAGCCGGTGCAACAAAATCTCAT 502
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGGCGGAAATGTGCAAATCTCTCCGAGCTGTGGACATTAGCCGGTGCAACAAAATCTCAT 473
Query 503 CCATGGGCGTCTTAGAGCTTGTACAACACTGCAGATCATTGGAGACTCTTAGATGCGGGG 562
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 474 CCATGGGCGTCTTAGAGCTTGTACAACACTGCCGATCATTGGAGACTCTTAGATGCGGAG 533
Query 563 GATGCCCAAGCAGTGAGTCCACGGCACGCAGATCTTTGAGTATTTTTAAGCCAAACTTGA 622
|||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||
Sbjct 534 GATGCCCAAGCAGTGAGTCCACCGCGCGCAGATCTTTGAGTTTTTTTAAGCCAAACTTGA 593
Query 623 GTAATGTTGAAGGAGAAACATGGGAAGAAATAGACACTTCAGAGATTGGCCATGGTGGTC 682
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GTAATGGTGAAGGAGAAACATGGGAAGAAATAGACACTTCAGAGATTGGCCATGGTGGTC 653
Query 683 AATCATTGCGTTGGCTTGTTTGGCCACGAATTGATAAGGATTCACTGGAGATGTTATCCT 742
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 654 AATCATTGCGTTGGCTTGTTTGGCCACGAATTGATAAGGATTCATTGGAGATGTTATCCT 713
Query 743 CGGAGTGTCCAAGAATAGTGGTAAATCCCAAGCCATCACTTGTCGCGTACAGAGCAGACG 802
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 714 TGGAGTGTCCAAGAATAGTGGTAAATCCCAAACCATCACTTGTCGCGTACAGAGCAGACG 773
Query 803 AGGTTCCTCGAGAAGCACTACCAGATGTTGCACTGGACGAACCATTTGTCAAAGATATTG 862
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 774 AGGTTCCTCGAGAAGCACTACCAGATGTTGCAGTGGACGAACCATTTGTCAAAGATATTG 833
Query 863 ATCCTAAGACGTGGGTTGTTACTGGAGTTGTGCAGAAGCCCACATCTTTCCCGTTAAGCA 922
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 834 ATCCTAAGACGTGGGTTGTTACTGGAGTTGTGCAGAAGCCCACATCTTTCCTGTTATGCA 893
Query 923 ATGAACTGTCAATAGCAGAGAAGTTCAGACTAGCATTTGCAGAGAGAGATGCAAGAATGG 982
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 894 ATGAACTGCCAATAGCAGAGAAGTTCAGACTAGCATTTGCAGAGAGAGATGCAAGATTGG 953
Query 983 CCCCTAAACGTGCAAAGAATGCAAGGCAACGTCAACGTCGTGCTGAGAGGGATTGGATGA 1042
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 954 CCCCTAAACGTGCAAAGAATGCAAGGCAACGTCAGCGTCGTGCTGAGAGGGATTGGATGA 1013
Query 1043 TGTCAAGCGACGAAGCCAAAGCAATGGTTTTTGCATCAAAGGCTACCAGATCTTTGCACA 1102
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1014 TGTCAAGCGACGAAGCCAAAGCAATGGTTTTGGCATCAAAGGCCACCAGATCTTTGCACA 1073
Query 1103 AGAGTTAACAATATGGATTCTCTTCATAAAATGTATGACAAAGAAAATATAGGAGGAAGA 1162
||||||| ||||||| ||||||||||| |||| |||| ||||||||||||||||||||||
Sbjct 1074 AGAGTTAGCAATATGAATTCTCTTCATCAAATATATGTCAAAGAAAATATAGGAGGAAGA 1133
Query 1163 TGAGTGGATTT-CTAA-GAATGCATGCCTCTTTTCTCTACTGTGGTCAAGTTCAATCAGT 1220
||||||||||| || | || |||||| |||| ||||||||||||| |||| |||||||
Sbjct 1134 TGAGTGGATTTTCTTATGAG-GCATGCTTCTT--CTCTACTGTGGTCGAGTTGAATCAGT 1190
Query 1221 TTACAGCAGTTTCTGGGGAGCAAAAGTGAATAGA---G-----TGGCTGGTTAGAGAAAA 1272
| |||||||||| |||| || ||||||||||||| | |||||||||| ||||||
Sbjct 1191 TCACAGCAGTTTTTGGG-AGGAAAAGTGAATAGAAAAGAACAGTGGCTGGTTACAGAAAA 1249
Query 1273 GTGTTTGTAACAGTTTAATCTTGTTTCCAGGTCTTTCAATTGATGCTACGGTCAAAGATA 1332
|||||||||||||||||||||||||||||| |||||||| || |||||| ||||||||||
Sbjct 1250 GTGTTTGTAACAGTTTAATCTTGTTTCCAGATCTTTCAAGTGGTGCTACAGTCAAAGATA 1309
Query 1333 CGTTAAACTGTTTATAAAATGAAGTGTGTATTTTTGCATTTTCTT 1377
|||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1310 CGTTAAACTGTTTATAGAATGAAGTGTGTAATTTTGCATTTTCTT 1354
> Ahg492099 jgi|Araly1|492099|fgenesh2_kg.7__1532__AT4G26970.1
Length=3316
Score = 124 bits (67), Expect = 1e-27
Identities = 75/79 (95%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 1299 CCAGGTCTTTCAATTGATGCTACGGTCAAAGATACGTTAAACTGTTTATAAAATGAAGTG 1358
|||| ||||||||||| |||||| |||||||||||||||||||||||||| |||||||||
Sbjct 3316 CCAGATCTTTCAATTGGTGCTACAGTCAAAGATACGTTAAACTGTTTATAGAATGAAGTG 3257
Query 1359 TGTATTTTTGCATTTTCTT 1377
|||||||||||||||||||
Sbjct 3256 TGTATTTTTGCATTTTCTT 3238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51542183784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5