BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26990.1
Length=1802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492097 jgi|Araly1|492097|fgenesh2_kg.7__1530__AT4G26990.1 2220 0.0
> Ahg492097 jgi|Araly1|492097|fgenesh2_kg.7__1530__AT4G26990.1
Length=1587
Score = 2220 bits (1202), Expect = 0.0
Identities = 1481/1612 (92%), Gaps = 34/1612 (2%)
Strand=Plus/Plus
Query 36 AATTTAGCTCCGAATAGACCGTGATTTCCATAGAAACTTCTACAGATTTGAAATCTTTCT 95
||||||||||||||||||||||||||| |||||||||| || ||||||||| || || |
Sbjct 1 AATTTAGCTCCGAATAGACCGTGATTT-GATAGAAACTTGTAGAGATTTGAATTC-TT-T 57
Query 96 TCA-AGGGATTTGAAAGGTCGTCAGAAAG-aaaaaaaaGGATGGGAAACGCAAGGAAAGT 153
||| || | | | || | | || | |||||||||||||||||||||||||||||
Sbjct 58 TCAGAGAAAATCG-AACATTGAAAGGTCGTCAAAAAAAGGATGGGAAACGCAAGGAAAGT 116
Query 154 GGAAGACGACGacaacaacaa--caacaacaaGTCTTCATCATCGGTGTTAATAGCAGCA 211
||||||||||||||||||||| | || | | || ||||||||| ||||||||||||||
Sbjct 117 GGAAGACGACGACAACAACAACTCTTCATC-A-TCATCATCATCGCTGTTAATAGCAGCA 174
Query 212 ACTATGTGTATAATCGGATTGCAAGTTCATGTTCACGTCAAGGATGGTTCCGTCTTTTCT 271
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 ACCATGTGCATAATCGGATTGCAAGTTCATGTTCACGTCAAGGATGGTTCCGTCTTTTCT 234
Query 272 GGGATTTTCTTCACCGCTTCCGTCGACAATGGCTTTGGCATTGTTTTGAAGGATGCAAGA 331
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 235 GGGATTTTCTTCACCGCTTCCGTCGACAACGGCTTTGGCATTGTTTTGAAGAATGCAAGA 294
Query 332 ATTACTAAGAAGGGGACAAGTATATCGAATGTAGCAAGCGGGAGTGTGGTCGATACACTT 391
|||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||
Sbjct 295 ATTACTAAGAAGGGGACAAGTAAATCCAATGTAGCAAGCGGGACTGTGGTCGATACACTT 354
Query 392 GTTATTCTGTCTTCCACTATTGTTCAAATAATTGCGGAAGGAGTCTCGCTTCCATCAAAT 451
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||
Sbjct 355 GTTATTCTGTCTTCCAATATTGTTCAAATTGTTGCGGAAGGAGTCTCGCTTCCATCGAAT 414
Query 452 GTTACAACA-GCCAATAATGAGGTCGGATCAGCCACAGAAACATTACCTTCTGAGCCTCG 510
|||| | || | |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 415 GTTAGAGCATG-CAATAATGAGGTTGGATCAGCCACAGAAACATTACCTTCTGAGCCTCG 473
Query 511 TTTATGTGCTGCAAATAAATCCACAAATGTTTCCACTCAAGGAAGGGGCTTTAATCATAA 570
||||||||||| ||||||||||||||| ||||||||| | |||||||||
Sbjct 474 TTTATGTGCTG------------CAAATGTTTCCACTCGAGGAAGGGGATATAATCATAA 521
Query 571 GAGGCAGGCTGGAGCTC-AGATTTTGAAGCGTAGTGTACAAATTCCAGAGGTTTATCAAC 629
||||||||||||||| | ||||||||||||||||||||||||||||||| || |||||
Sbjct 522 GAGGCAGGCTGGAGC-CAAGATTTTGAAGCGTAGTGTACAAATTCCAGACATTCATCAAG 580
Query 630 AGGATAATATTGATATCCAAAGCTCAAGTTCTAGCTTGGATAGCATGTCCGAACGAGTTA 689
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 581 AGGATAATATTGATATCCAAAGCTCAAGTTCTAGCTTGGATAGCATATCCGAACGAGTTA 640
Query 690 AACCTATAGAAGAAGATAACTTGATGCCGGAACCTCTTAGTAATGGTTTTCACAATGCTG 749
|||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 641 AACCCATAGAAGAAGATAACTTGATGCCGGAACCTTTTAGTAATGGTTTTCACGATGCTT 700
Query 750 CTGCAAA-ACCCTCTTCAACTGACAATTTATTGTCAGAAAGTACACCTGTTGATGACACC 808
||| ||| ||||||||||||||||||| || ||| |||||||| || |||||||||||
Sbjct 701 CTG-AAAGGCCCTCTTCAACTGACAATTCATCATCACAAAGTACAACTTTTGATGACACC 759
Query 809 TTGGAATTGTGTCGGGGTAGAGTGGCGGCATCTTCAACTGCATCAGTACCTATCCAGGCC 868
| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 760 TCGGAATTGTGTCGGGGTAGAAT---GGCATCTTCAACTGCATCAGTACCTATCCAGGCC 816
Query 869 GTCAAAAAGCCTAAGGAGTTCAAGCTGAATCCAGAGGCTAAGATTTTTTCTCCGTCTTAT 928
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 817 GTCAAAAAGGCTAAGGAGTTCAAGCTGAATCCAGAGGCAAAGATTTTTTCTCCGTCTTAT 876
Query 929 ACAAAACGGCTTTCACCGTCTCCTGTCGGTATGCCTCATGTTGGAAATATTGCTTACATA 988
|||||| |||||||||||||||| || | | ||||| ||||||||||||||||||| |||
Sbjct 877 ACAAAAAGGCTTTCACCGTCTCCAGTTGCTGTGCCTGATGTTGGAAATATTGCTTATATA 936
Query 989 CCAAGCAACACTCCCATGCTACCAGTTCCTGAAGCTATTTACCCAGAAGTTGTAAACAAC 1048
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 937 CCAAGCAACACTCCCATGCTACCAGTTCCTGAAGCTATTTACCCAGGAGTTGGAAACAAT 996
Query 1049 CCTTATGTGCCGCAAGCACCTCCACCTTCTAAGTTTGTACCATATGGTAATGTGACCGCT 1108
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 997 GCTTATGTGCCGCAAGCACCTCCACCTTCTAAGTTTGTACCATATGGTAATTTGACTGCT 1056
Query 1109 GGACATGCTGTCGGTGGATTTCAATTTCCTCAACACATGATTGGGCCAACTGTTAACAGA 1168
|||||||||||| | ||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1057 GGACATGCTGTCAGCGGATTTCAATTTCCTCAACACATGATTGGACCTACCGTTAACAGG 1116
Query 1169 GCACAGCCTCAGAGATACACCGCTCAGTACCATTCTGTTCAAGCTGCACCAATGCTTGTA 1228
|||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||||
Sbjct 1117 GCACAGCCTCAGAGATTCACCTCTCAGTACCATTCTGTTCAAACTGCACCGATGCTTGTA 1176
Query 1229 AATCCAAGTCCTCAGGTGATGGTTGCAAGATCGGGGCAGCTTGTCTATGTCCAATCAGTT 1288
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1177 AATCCAAGTCCTCAGGTGATGGTTGCAAGATCGGGGCAGCTTGTATATGTCCAATCAGTT 1236
Query 1289 TCTCAGGATCTGGTTCAAGGAACACCGCCTCTCTCACCTATGCTCTCCTGC-CCTCTACC 1347
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1237 TCTCAGGATCTGGTTCAAGGAACACCGCCTCTCTCACCTATGCTCTC-TGGTCCTCTACC 1295
Query 1348 TACCGCACAACATGTCCAATACCTGAAGCATCAAGGTGTAGTAGCAGCTGGCCAGCCGCT 1407
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1296 TACTGCACAACATGTCCAATACCTGAAGCATCACGGTGTAGTAGCAGCTGGCCAGCCGCT 1355
Query 1408 ACCGCTATGTGTCTCCCTACCATTCACGACTGGTGGACCGCAACCTTATGGCATTCCCAC 1467
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1356 ACCGCTATGTGTCTCCCAACCGTTCACGACTGGTGGACCGCAACCTTATGGCATTCCCAC 1415
Query 1468 CCAATTCCCAGCTATGCAGCAGCCTCCTTTCCCCACGAATCAGCCAATGACAGTTGCAGT 1527
||||||||| | |||||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 1416 CCAATTCCCGGTTATGCAGCAGCCTCCTTTTCCCACAAATCAGCCAATGACATTTGCAGT 1475
Query 1528 TCCTAATGGTTTCTACACAAAGTTTCCATAAACAAAGTCTCATTGTTTTTGGTTTCA-TA 1586
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1476 TGCTAATGGTTTCTACACAAAGTTTCCATAAACAAAGTCTCATTGTTTTTGGTTTAAATA 1535
Query 1587 CCTTTATTCTTTGCCTCTCCAACCTAATAAGGGTTAAAAAGGTCCTAGTTTT 1638
|||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1536 CCTTTATTCTTTACCTCTCCAACCTAATAAGGGTTAAGAAGGTCCTAGTTTT 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67648275120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5