BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27020.1
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945359 jgi|Araly1|945359|scaffold_701588.1 2673 0.0
Ahg331828 jgi|Araly1|331828|fgenesh1_pm.C_scaffold_8001171 1399 0.0
> Ahg945359 jgi|Araly1|945359|scaffold_701588.1
Length=1610
Score = 2673 bits (1447), Expect = 0.0
Identities = 1550/1600 (97%), Gaps = 5/1600 (0%)
Strand=Plus/Plus
Query 88 TTAACAATGGCTGCTTCATCGTCTCCGTGCATCTTCTTCGCCACTACCTTACTGGTGCTG 147
|||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||
Sbjct 15 TTAACAATGGCTGCTTCATCGTCTTTGTGCGTCTTCTTCACCACTACCTTAC---TGCTG 71
Query 148 CTTCTCACT-TTCTCATCCGGGAAATTACCATTTCACCCTCGAGACCTGCTTCCGCTTTT 206
|||||| || || ||||||| |||| |||||||||||||||| |||||||||||||||||
Sbjct 72 CTTCTCTCTATT-TCATCCGTGAAACTACCATTTCACCCTCGGGACCTGCTTCCGCTTTT 130
Query 207 TCCGAGGCAAGTCTCGTGGCCGGTAGTCAATTCTCTCAACACTGCCGTCGATCTCCTCCC 266
|| |||||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 131 GCCCAGGCAAGTCTCGTGGCCGGTTCTTAATTCTCTCAACACAGCCGTCGATCTCCTCCC 190
Query 267 TACTTTCATCGGCTCCGCTTCTGTTAGAAACGACGCCGTGGAGTGGAAAGGTGCTTGCTT 326
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 191 TACTTTCATCGGCTCCGCTTCTGTTAAAAACGACGCCGTGGAGTGGAAAGGTGCTTGCTT 250
Query 327 TTATGAGAACAAAGCTTGGTTGGAGCTCAATAACAAGTCCGGTTCCGAATTCGGCGGCGG 386
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 251 TTATGAGAACAAAGCTTGGTTAGAGCTCAATAACAAGTCCGGTTCCGAATTCGGCGGCGG 310
Query 387 CACACTTCACATTAAGGTCGATAAGGCACATAGTTGGACGTGCATGGATATTTATGTCTT 446
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 311 CACACTTCACATTAAGGTCGATAAGGCACATAGTTGGACTTGCATGGATATTTATGTCTT 370
Query 447 TGTCACACCATATCGTGTGACATGGGATTGGTACTTTGCTTCGAGAGAGCACACTATGGA 506
|||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 371 TGTCACTCCATATCGTGTGACATGGGATTGGTACTTTGTTTCGAGGGAGCACACTATGGA 430
Query 507 ATTCAAGGAGTGGGAGGGTAAAGCTGAGTATGAATATGTTAAGCAGAAAGGAGTTTCGAT 566
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 431 ATTCAAGGAGTGGGAGGGTAAAGCCGAGTATGAATATGTTAAGCAGAAAGGAGTTTCAAT 490
Query 567 ATTCCTCATGGAAGCAGGGATGTTGGGAACTCTCCGAGCTCTGTGGGATGTCTTCCCTCT 626
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 491 ATTCCTCATGGAAGCAGGGATGTTGGGAACTCTTCGAGCGCTGTGGGATGTCTTCCCTCT 550
Query 627 GTTTACCAATACTGGTTGGGGGGAGAATTCTAACATAGCGTTTCTTAAGAATCATATGGG 686
||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 551 ATTTACCAATACCGGTTGGGGGGAGAACTCTAATATCGCGTTTCTTAAGAATCATATGGG 610
Query 687 TGCTAATTTCTATCCTCGTCCTAAACCTTGGGTTACAAATATTACTACCGATGAAATTCA 746
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TGCTAATTTCTATGCTCGTCCTAAACCTTGGGTTACAAATATTACTACCGATGAAATTCA 670
Query 747 CTCTGGAGACTTACTAGCTATCTCCAAAATCCGTGGGCGGTGGGGTGGTTTTGAGACCCT 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 CTCTGGAGACTTACTAGCTATCTCCAAAATCCGTGGGCGGTGGGGTGGTTTTGAGACCCT 730
Query 807 AGAGAAGTGGGTAAGTGGAGCCTATGCTGGTCACACTGCTGTCTGTTTGAGGGACTCTGA 866
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 731 TGAGAAGTGGGTAAGTGGAGCCTATGCTGGTCACACTGCTGTCTGTTTGAGGGATTCTGA 790
Query 867 AGGGAAACTCTGGGTTGGTGAATCCGGGAATGAAAATGAAAAGGGAGAAGATGTAATAGC 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 AGGGAAACTCTGGGTTGGTGAATCCGGGAATGAAAATGAAAAGGGAGAAGATGTAATAGC 850
Query 927 GATATTGCCATGGGAAGAGTGGTGGGAGTTTGAACAAACCAAGGATGACTCGAATCCCCA 986
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 851 GATATTGCCATGGGAAGAGTGGTGGGAGTTTGAACAAACCAAGGATGACTCAAATCCCCA 910
Query 987 CATTGCATTGCTACCGTTGCATCCTGATTATCGAGCCAAGTTTAATGTTACAGCTGCATG 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 CATTGCATTGCTACCGTTGCATCCTGATTATCGAGCCAAGTTTAATGTTACAGCTGCATG 970
Query 1047 GGAATATGCTCGTAGCATGGATGGCAAACCATATGGCTATCACAACTTGATCTTTAGCTG 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 GGAATATGCTCGTAGCATGGATGGCAAACCATATGGCTATCACAACTTGATCTTTAGCTG 1030
Query 1107 GATCGATACCATCAGCGGAAATTACCCACCTCCTCTGGATGCTCAACTTGTTGCTTCTGT 1166
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1031 GATCGATACCATCAGCGGAAATTACCCACCTCCTCTGGATGCTCACCTTGTTGCTTCTGT 1090
Query 1167 CATGACAGTTTGGAGCAAAATCCAGCCTGATTATGCTGCTAACATGTGGAATGAAGCCCT 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 CATGACAGTTTGGAGCAAAATCCAGCCTGATTATGCTGCTAACATGTGGAATGAAGCCCT 1150
Query 1227 TAACAAGCGACTCGGAACAGAGGGTCTTGATCTTCCTGATGTACTGGTGGAAGTCGAAAA 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TAACAAGCGACTCGGAACAGAGGGTCTTGATCTTCCTGATGTACTGGTGGAAGTCGAAAA 1210
Query 1287 GCGTGGATCCTCTTTTGACGAGTTGCTGGCAGTTCCTGAACAAGATGATTGGATATATAG 1346
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1211 GCGTGGATCCTCTTTTGACGAGTTGCTGGCAGTTCCGGAACAAGATGATTGGATATATAG 1270
Query 1347 CGATGGGAAATCAACGTCTTGTATCGCTTTTATCCTCGAAATGTACAAAGAAGCTGGGCT 1406
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 TGATGGGAAATCAACTTCTTGTATCGCTTTTATCCTCGAAATGTACAAAGAAGCTGGGCT 1330
Query 1407 TTTCGATCCAATCTCTAGTTCCATTCAAGTCACAGAATTCACGATCAAAGATGCTTACAT 1466
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1331 TTTCGATCCAATCTCTAGTTCCATTCAAGTCACGGAATTCACGATCAAAGATGCTTACAT 1390
Query 1467 GCTCAAGTTTTTCGAGAGTAATGCAAGTCGTTTTCCCAAATGGTGCAATGACAATGACGT 1526
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1391 GCTCAAGTTTTTCGAGAATAATGCAAGCCGTTTTCCCAAATGGTGCAATGACAATGATGA 1450
Query 1527 TGTGAAGCTTCCGTACTGTCAAATACTTGGGAAATACAGGATGGAACTTCCCGGTTACAA 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 TGTGAAGCTTCCGTACTGTCAAATACTTGGGAAATACAGGATGGAACTTCCCGGTTACAA 1510
Query 1587 CACAATGGAGCCATACCCACATATGAACGAGCACTGCCCGTCTCTGCCTCCAAAATACCA 1646
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 CACAATGGAGCCATACCCGCATATGAACGAGCACTGCCCGTCTCTGCCTCCAAAATACCA 1570
Query 1647 CAGACCAAAGAACTGCTAGAACCGAAAAGTCAACTGTATT 1686
|||||||||||||||||||||||||||| |||| ||||||
Sbjct 1571 CAGACCAAAGAACTGCTAGAACCGAAAAATCAATTGTATT 1610
> Ahg331828 jgi|Araly1|331828|fgenesh1_pm.C_scaffold_8001171
Length=1590
Score = 1399 bits (757), Expect = 0.0
Identities = 1271/1518 (84%), Gaps = 40/1518 (3%)
Strand=Plus/Plus
Query 168 GAAATTACCATTTCACCCTCGAGACCTGCTTCCGCTTTTTCCGAGGCAAGTCTCGTGGCC 227
||||| ||| ||||| ||||| || ||||||||| ||| || || |||||||| |||||
Sbjct 93 GAAATCACCGTTTCATCCTCGCGATTTGCTTCCGCATTTGCCCAGACAAGTCTCATGGCC 152
Query 228 GGTAGTCAATTCTCTCAAC-ACTGCCGTCGATCTCCTCCCTACTTTCATCGGCTCCGCTT 286
| | |||| ||||| || | || | |||||| || |||||||||||||| | ||
Sbjct 153 GATTCTCAACTCTCTTTACGGC-GCTGCCGATCTGCTTCCTACTTTCATCGGAACAGC-- 209
Query 287 CTGTT-A-GAAACGACGCCGTGGAGTGGAAAGGTGCTTGCTTT-TATGAGAACAAAGCTT 343
||| | | ||||| |||| || |||||||| ||||| ||| |||||||||| ||||
Sbjct 210 GAGTTCAGGGAACGATTCCGTTGACTGGAAAGGGGCTTG-TTTCTATGAGAACACGGCTT 268
Query 344 GGTTGGAG-CTCAATAACAAGTCCGGTTCCGAATTCGGCGGCGGCACACTTCACATTAAG 402
|||| ||| || |||||||||| ||| ||| || || || ||||| ||||||||||||
Sbjct 269 GGTTAGAGTTTC-ATAACAAGTCTGGTAGCGAGTTTGGTGGAGGCACTCTTCACATTAAG 327
Query 403 GTC-GATAAGGCACATAGTTGGACGTGCATGGATATTTATGTCTTTGTC-ACACCATATC 460
| | |||||||| ||||||||||| || |||||| ||||||| |||| | || |||||||
Sbjct 328 G-CGGATAAGGCGCATAGTTGGACTTGTATGGATCTTTATGTATTTG-CAACTCCATATC 385
Query 461 GTGTGACATGGGA-TTGGTACTTTGCTTCGA-GAGAGCACACTATGGAA-TTCAAGGAGT 517
||||||||| ||| ||||||||| ||| | || |||| ||| ||||| ||| |||||
Sbjct 386 GTGTGACAT-GGACTTGGTACTTCATTTC-ACGACAGCATACTGTGGAATTTC-CGGAGT 442
Query 518 GGGAGGGTAAAGCTGAGTATGAATATGTTAAGCAGAAAGGAGTTTCGATATTCCTCATGG 577
|||| || | |||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 443 GGGATGGCAGAGCTGAGTATGAATATGTTAAGAACAAAGGAGTTTCGATATTCCTTATGC 502
Query 578 AAGCAGGGATGTTGGGAACTCTCCGAGCTCTGTGGGATGTCTTCCCTCTGTTTACCAATA 637
| ||||||||||| ||||| || | ||| ||||||||||| || ||||| ||||||||||
Sbjct 503 ACGCAGGGATGTTAGGAACACTTCAAGCACTGTGGGATGTTTTTCCTCTCTTTACCAATA 562
Query 638 CTGGTTGGGGGGAGAATTCTAA-CATAGCGTTTCTTAAGAATCATATGGGTGCTAATTTC 696
||||||||||||||| ||||| | | || ||||| |||| |||||||| ||||||||
Sbjct 563 CTGGTTGGGGGGAGAGCTCTAATC-TTGCATTTCTCGAGAAGCATATGGGAGCTAATTT- 620
Query 697 T-ATCCTCGTCCTAAACCTTGGGTTACAAATATTACTACCGATGAAATTCACTCTGGAGA 755
| | ||||||||| |||| |||||||||||| |||| || ||| ||||||| ||||| ||
Sbjct 621 TGAACCTCGTCCTGAACCATGGGTTACAAATGTTACAACTGATCAAATTCAGTCTGGTGA 680
Query 756 CT-TAC-TAGCTATCTCCAAA-ATCCGTGGGCGGTGGGGTGGTTTTGAGACCCTAGAGAA 812
| | | ||||||| | |||| || ||||||||||||||||||||||||||||| |||||
Sbjct 681 -TCT-CTTAGCTAT-TTCAAAGATTCGTGGGCGGTGGGGTGGTTTTGAGACCCTTGAGAA 737
Query 813 GTGGGTAAGTGGAGCCTATGCTGGTCACACTGCTGTCTGT-TTGAGGGACTCTGAAGGGA 871
||||| ||||| || ||||||||||| | ||||| | | ||||| ||||||||||| |
Sbjct 738 ATGGGTGAGTGGGGCATATGCTGGTCATTCCGCTGT-TTTCTTGAGAGACTCTGAAGGAA 796
Query 872 AACTCTGGGTTGGTGAATCCGGGAATGAAAATGAAAAGGGAGAAGATGTAATAGCGATAT 931
|||| ||||||||||| || || |||||||| || |||||||| ||||||||||| || |
Sbjct 797 AACTTTGGGTTGGTGAGTCAGGAAATGAAAACGATAAGGGAGAGGATGTAATAGCAATCT 856
Query 932 TGCCATGGGAAGAGTGGTGGG-AGTTTGAACAAACCAAGGATGACTCGAATCCCCACATT 990
| |||||||| |||||||||| | ||||||||||| ||||||||||||||||| || ||
Sbjct 857 TACCATGGGAGGAGTGGTGGGCA-TTTGAACAAACAAAGGATGACTCGAATCCTCAGATC 915
Query 991 GCATTGCTACCGTTGCATCCTGAT-TATCGAGCCAAGTTTAATGTTACAGCTGCATGGGA 1049
||||||||||| |||||||||||| | ||| || || || ||||| | ||||| ||| |
Sbjct 916 GCATTGCTACCTTTGCATCCTGATGT-TCGTGCTAAATTCGATGTTGCTGCTGCTTGGAA 974
Query 1050 ATATGCTCGTAGCATGGATGGCAAACCATATGGCTATCACAACTTGATCTTTAGCTGGAT 1109
||||||||| |||||||| || ||||||||||| |||||||||||||| ||||| |||||
Sbjct 975 ATATGCTCGCAGCATGGAGGGTAAACCATATGGTTATCACAACTTGATTTTTAGTTGGAT 1034
Query 1110 CGATACCATCAGCGGAAATTACCCACCTCCTCTGGATGCTCAACTTGTTGCTTCTGTCAT 1169
|||||| | || | ||| ||||| |||||||| ||||| || |||||||| ||| ||||
Sbjct 1035 TGATACCGTTAGTGAAAACTACCCGCCTCCTCTAGATGCCCATCTTGTTGCATCTTTCAT 1094
Query 1170 GACAGTTTGGAGCAAAATCCAGCCTGATTATGCTGCTAACATGTGGAATGAAGCCCTT-A 1228
||| || |||||| |||| |||||||| ||||||||||||||||||||||||| |||| |
Sbjct 1095 GACTGTCTGGAGCCAAATGCAGCCTGAGTATGCTGCTAACATGTGGAATGAAG-CCTTGA 1153
Query 1229 ACAAGCGACTCGGAACAGAGGGTCTTGATCTTCCTGATGTACTGGTGGAAGTCGAAAAGC 1288
|||||||||| ||||||||||||||||||||| ||||||||||||| ||||| || ||||
Sbjct 1154 ACAAGCGACTGGGAACAGAGGGTCTTGATCTTTCTGATGTACTGGTCGAAGTAGAGAAGC 1213
Query 1289 GTGGATCCTCTTTTGACGAGTTGCTGGCAGTTCCTGAACAAGATGATTGGATATATAGCG 1348
|||||||||| |||||| | | |||||||| ||||||||||| ||||||||||| ||||
Sbjct 1214 GTGGATCCTCATTTGACAAACTACTGGCAGTACCTGAACAAGACGATTGGATATACAGCG 1273
Query 1349 ATGGGAAATCAACGTCTTGTATCGCTTTTATCCTCGAAATGTACAAAGAAGCTGGGCTTT 1408
|||| |||||||| || || |||||||| || ||||||||||||||||||||||| || |
Sbjct 1274 ATGGTAAATCAACCTCATGCATCGCTTTCATTCTCGAAATGTACAAAGAAGCTGGCCTGT 1333
Query 1409 TCGATCCAATCT-CTAGTTCCATTCAAGTCACAGAATTCACGATCAAAGATGCTTACATG 1467
||| |||| | | ||| ||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1334 TCGGTCCACT-TGCTAATTCTATTCAAGTCACGGAATTCACGATCAAAGATGCTTACATG 1392
Query 1468 CTCAAGTTTTTCGAGAGTAATGCAAGTCGTTTTCCCAAATGGTGCAATGACAATGACGTT 1527
||||| |||||||||| |||||||||||| |||| | ||||||||||||||||||| |
Sbjct 1393 CTCAATTTTTTCGAGAACAATGCAAGTCGTCTTCCTACATGGTGCAATGACAATGACAAT 1452
Query 1528 GTGAAGCTTCCGTACTGTCAAATACTTGGGAAATACAGGATGGAACTTCCCGGTTACAAC 1587
||||||||||| || ||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 1453 GTGAAGCTTCCTTATTGTCAGATACTTGGGAAATACAGAATGGAACTTCCTGGTTACAAC 1512
Query 1588 ACAATGGAGCCATACCCACATATGAACGAGCACTGCCCGTCTCTGCCTCCAAAATACCAC 1647
|| ||||| |||||| | || ||||| || || || || |||| |||||||| ||| ||
Sbjct 1513 ACTATGGAACCATACTCGCACATGAATGAACAATGTCCAACTCTACCTCCAAAGTACAAC 1572
Query 1648 AGACCAAAGAACTGCTAG 1665
|||||| | |||||||||
Sbjct 1573 AGACCAGATAACTGCTAG 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68981433695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5