BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27030.1
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492093 jgi|Araly1|492093|fgenesh2_kg.7__1526__AT4G27030.1 1718 0.0
Ahg481151 jgi|Araly1|481151|fgenesh2_kg.4__211__AT2G22890.1 769 0.0
> Ahg492093 jgi|Araly1|492093|fgenesh2_kg.7__1526__AT4G27030.1
Length=1122
Score = 1718 bits (930), Expect = 0.0
Identities = 1046/1102 (95%), Gaps = 8/1102 (1%)
Strand=Plus/Plus
Query 9 CTTTCACCTGCAATCACTCTCAATGGCTGTATCACTTCCAACCAAGTACCCTCTACGACC 68
||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1 CTTTCACCTGCAATCTCTCTCAATGGCTGTATCACTTCAAACCAAGTACCCTCTAAGACC 60
Query 69 TATCACCAACATCCCAAAAAGCCACCGTCCCTCGCTTCTCCGTGTACGTGTCACCTGCTC 128
||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 61 TATCACCAACATCCCAAGAAGCTACCGTCCGTCGCTTCTCCGTGTACGTGTCACCTGCTC 120
Query 129 TGTTACTACCACCAAGCCTCAGCCTAATCGTGAGAAGCTTCTGGTAGAGCAACGCACTGT 188
||||||||||| |||||||||||| ||||||||||||||| |||||||||||| || |||
Sbjct 121 TGTTACTACCATCAAGCCTCAGCCAAATCGTGAGAAGCTTGTGGTAGAGCAACACATTGT 180
Query 189 GAATCTTCCTCTGTCCAACGACCA-ATCTCTGCAATCGACCAAGCCTCGCCCTAACCGTG 247
||| | ||||||||||||| |||| | ||||||||||| |||||||||| ||||||||||
Sbjct 181 GAAACCTCCTCTGTCCAACAACCACA-CTCTGCAATCGTCCAAGCCTCGGCCTAACCGTG 239
Query 248 AGAAGCTTGTGGTTGAGCAACGCCTTGCCAGCCCTCCTCTGTCCAATGACCCAACTTTGA 307
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 240 AGAAGCTTGTGGTTGAGCAACGCCTTGCGAGTCCTCCTCTGTCCAATGACCCAACTTTGA 299
Query 308 AATCGACATGGACTCACCGGTTATGGGTTGCAGCGGGCTGCACCACTTTGTTTGTCTCTT 367
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 AATCGACATGGACCCATCGGTTATGGGTTGCAGCAGGCTGCACCACTTTGTTTGTCTCTT 359
Query 368 TAGCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGCCTCGAACCAGCTTTAGCCG 427
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 TAGCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGGCTCGAACCAGCTTTAGCCG 419
Query 428 GTTATGCAGGGTACATCTTAGCTGATCTAGGTTCCGGTGTCTACCACTGGGCCATTGATA 487
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 GTTATGCAGGGTACATCTTAGCTGATCTAGGTTCTGGTGTCTACCACTGGGCCATTGATA 479
Query 488 ACTACGGTGATGAGTCAACACCTGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACC 547
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 ACTACGGTGATGAGTCAACACCAGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACC 539
Query 548 ACAAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTACACGCTCTGGCTC 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACAAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTACACGCTCTGGCTC 599
Query 608 AAGTCATAACCTTCACAGTTCTTCCACTAGACCTTGCATTTAACGACCCTGTGTTTCACG 667
||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 600 AAGTCATAACCTTTACTGTTCTCCCACTAGACCTTGCATTTAACGACCCTGTCTTTCACG 659
Query 668 GCTTTGTGTGCACATTTGCATTTTGCATATTGTTTAGCCAGCAATTCCATGCTTGGGCAC 727
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 660 GCTTTGTGTGCACATTTGCATTTTGCATAATGTTTAGCCAGCAATTCCATGCTTGGGCAC 719
Query 728 ATGGAACCAAGAGCAAGCTTCCACCTCTCGTGGTCGCGTTGCAGGACATGGGGTTACTTG 787
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 720 ATGGAACCAAGAGCAAGCTTCCACCTCTCGTGGTGGCGTTGCAGGACATGGGGTTGCTTG 779
Query 788 TTTCACGGAGACAGCATGCGGAACATCATCGAGCACCGTATAACAACAATTACTGCATCG 847
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 TTTCACGGAGACAGCACGCAGAACATCATCGAGCACCATATAACAACAATTACTGCATCG 839
Query 848 TGAGTGGAGCATGGAACAATGTTCTGGATGAGAGTAAGGTCTTTGAGGCATTGGAGATGG 907
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 TGAGTGGGGCATGGAACAATGTTTTGGATGAGAGTAAGGTCTTTGAGGCATTGGAGATGG 899
Query 908 TGTTTTATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAGCCAAACTCTGACTGGA 967
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 900 TGTTTTATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAACCAAACTCTGACTGGA 959
Query 968 TAGAAGAAACCGAAATCTCCAACAACCAAGCATAAATAttttttttACAGAGTGATACAT 1027
|||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 960 CAGAAGAAACCGAGATCTCCAACAACCAAGCATAAACAAATTTTTTACAGATTGATACAT 1019
Query 1028 GTACAAGAAAATTTCAGTAATATACTGAAAAGATTTCTTCGTAATTTATA---T--GTAA 1082
|||||||||||||| ||||||||| |||| |||||||||||||||||||| | ||||
Sbjct 1020 GTACAAGAAAATTTAAGTAATATAATGAAGAGATTTCTTCGTAATTTATACAGTATGTAA 1079
Query 1083 CGA-GTGTGACTGTATTTAATA 1103
| ||||||||||||||||||
Sbjct 1080 TAAAGTGTGACTGTATTTAATA 1101
> Ahg481151 jgi|Araly1|481151|fgenesh2_kg.4__211__AT2G22890.1
Length=897
Score = 769 bits (416), Expect = 0.0
Identities = 639/748 (85%), Gaps = 10/748 (1%)
Strand=Plus/Plus
Query 238 CCTAACCGTGAGAAGCTTGTGGTTGAGCAACGCCTTGCCAGCCCTCCTCTGTCCAATGAC 297
||||||| |||||||||||| |||||||||| |||| | |||||||| ||||| |||
Sbjct 114 CCTAACCATGAGAAGCTTGTTCTTGAGCAACGACTTGTGAATCCTCCTCTCTCCAACGAC 173
Query 298 CCAACTTTGA-AATCGACATGGACTCACCGGTTATGGGTTGCAGCGGGCTGCACCACTTT 356
||||| | | |||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 174 ACAACTCT-ACAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGT 232
Query 357 GTTTGTCTCTTTAGCTAAATCTG-TCATTGGAGGGTTTGATTCTCATCTCTGCCTCGAAC 415
||||||||||| || ||||| | ||||||||| ||||| |||||||||||| |||||||
Sbjct 233 CTTTGTCTCTTTTGCCAAATC-GATCATTGGAGCGTTTGGTTCTCATCTCTGGCTCGAAC 291
Query 416 CAGCTTTAGCCGGTTATGCAGGGTACATCTTAGCTGATCTAGGTTCCGGTGTCTACCACT 475
|| |||||||||||| ||| |||||| ||||||| ||||||||||| |||||||||||||
Sbjct 292 CAACTTTAGCCGGTTTTGCCGGGTACTTCTTAGCAGATCTAGGTTCTGGTGTCTACCACT 351
Query 476 GGGCCATTGATAACTACGGTGATGAGTCAACACCTGTAGTAGGAACCCAAATCGAAGCAT 535
|||||| ||||||||||||||||||||||| ||| ||||||| ||||| ||||||| ||
Sbjct 352 GGGCCACCGATAACTACGGTGATGAGTCAACGCCTCTAGTAGGGACCCATATCGAAG-AT 410
Query 536 T-TCAGGGTCACCACAAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTA 594
| ||| | |||||||||||||||||||||||| ||| ||||||||||||| |||||||||
Sbjct 411 TCTCAAGATCACCACAAGTGGCCTTGGACAATAACCGGACGGCAATTTGCAAACAATCTA 470
Query 595 CACGCTCTGGCTCAAGTCATAACCTTCACAGTTCTTCCACTAGACCTTGCATTTAACGAC 654
|| | |||||| || || ||| || | |||||| |||||||||||||||||| | |||
Sbjct 471 CATTTTATGGCTCCAGGCACAACTTTGATAGTTCTCCCACTAGACCTTGCATTTGATGAC 530
Query 655 CCTGTGTTTCACGGCTTTGTGTGCACATTTGCATTTTGCATATTGTTTAGCCAGCAATTC 714
| ||||||||| |||||||| ||| ||||||||| || |||||||| | |||| |||
Sbjct 531 CATGTGTTTCATGGCTTTGTAAGCATGTTTGCATTTAGCGTATTGTTTTGTCAGCTGTTC 590
Query 715 CATGCTTGGGCACATGGAACCAAGAGCAAGCTTCCACCTCTCGTGGTCGCGTTGCAGGAC 774
||| ||||||| ||||||||||||||||||||||||||||| ||||| | |||||| |||
Sbjct 591 CATACTTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCTTGTGGTGGGGTTGCAAGAC 650
Query 775 ATGGGGTTACTTGTTTCACGGAGACAGCATGCGGAA-CATCATCGAGCACCGTATAACAA 833
|| ||| | ||||||||||||| ||| |||| | || ||||| |||||||||||||| ||
Sbjct 651 ATTGGGCTGCTTGTTTCACGGATACATCATGTG-AATCATCACCGAGCACCGTATAATAA 709
Query 834 CAATTACTGCATCGTGAGTGGAGCATGGAACAATGTTCTGGATGAGAGTAAGGTCTTTGA 893
|||||||||| | |||||||| | |||||||| ||| ||||||| || |||||||||||
Sbjct 710 CAATTACTGCGTAGTGAGTGGGGTTTGGAACAAGGTTTTGGATGAAAGCAAGGTCTTTGA 769
Query 894 GGCATTGGAGATGGTGTTTTATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAGCC 953
|||| ||||||||||||| |||||| || | ||||||||||| |||||||||| || |
Sbjct 770 GGCAATGGAGATGGTGTTGTATTTCAAGATGGGGGTGAGACCGAGGTCATGGACCGATTC 829
Query 954 AAACTC-TGACTGGATAGAAGAAACCGA 980
|||||| | | ||||| |||||||||||
Sbjct 830 AAACTCCTAA-TGGATGGAAGAAACCGA 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42888281625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5