BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27040.1 Length=1480 Score E Sequences producing significant alignments: (Bits) Value Ahg945357 jgi|Araly1|945357|scaffold_701586.1 1249 0.0 > Ahg945357 jgi|Araly1|945357|scaffold_701586.1 Length=793 Score = 1249 bits (676), Expect = 0.0 Identities = 753/791 (95%), Gaps = 1/791 (0%) Strand=Plus/Plus Query 536 AGATCAGAAAACGGTGAAAGATGCGACGACGACCAGGAATTGGAGGATTACAAAAGGCCG 595 ||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 1 AGATCTGAAAACAGTGAAAGATGCGACGACGACCAGGAATCGGAGGATTGCAAAAGGCCG 60 Query 596 CAGCTGCTAGGGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATA 655 ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 61 CAGCTGCCAGGGATCAGTACCGGTTACTGGGAGAAAATGTAGCCAAGTTACGTACTGATA 120 Query 656 TGATGAAAGAACAGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACA 715 ||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||| Sbjct 121 TGATGAAAGAACAGCTCGCAACGTTCCGGTCCCAGCTTGAAGAGTTCGCTCGTAAACACA 180 Query 716 AGAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGTGCTAACA 775 |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| Sbjct 181 AGAATGACATTCGTAAGAATCCAGCCTTCAGGGCTCAATTCCATGAAATGTGTTCTAACA 240 Query 776 TTGGTGTGGATCCTCTTGCTTCTAACAAGGGTTTCTGGGCTGAGCTCCTTGGTATTGGTG 835 |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 241 TTGGTGTGGATCCTCTTGCTTCCAACAAAGGTTTCTGGGCTGAGCTCCTTGGAATTGGTG 300 Query 836 ACTTCTACTATGAACTTGGAGTTCAGATTATTGAAGTTTGCATGCTTACAAGATCACATA 895 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | Sbjct 301 ACTTCTACTATGAACTTGGAGTTCAGATTATTGAGGTTTGCATGCTTACAAGGTCACACA 360 Query 896 ATGGAGGTTTGATCAGCTTGCAAGAGCTCTGCAACCATCTTCGTCAGAGAAGGAAGAAAG 955 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 361 ATGGAGGTTTGATCAGCTTGCAAGAGCTCTGCAACCATCTTCGTCTGAGAAGGAAGAAGG 420 Query 956 ACCGTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGGTATTGG 1015 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 421 ATCGTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTTAAGGTATTGG 480 Query 1016 GTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCCGTTCAGTACCCACAG 1075 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | Sbjct 481 GTAGCGGATTTGAGGTTATCACAATTGGCAAGAAAAAGCTTGTCCGTTCTGTACCCACGG 540 Query 1076 AGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGGGCCAAGGCTTTGTGATTG 1135 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 541 AGCTGAACAAAGACCATAACCAGATCTTGGAGTTGGCTCAGGGCCAAGGCTTTGTGACTG 600 Query 1136 TGGAAGAGGTACAAAGACGCCTCTCATGGACATCTGGTCGCGTTATAGATGCTCTCGAAA 1195 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 601 TGGAAGAGGTACAAAGACGCCTCTCATGGACATCTGGTCGGGTTATAGATGCTCTCGAAA 660 Query 1196 CTTTGTTAGAGGAGGGCCTTGCCATGATCGACAATGGCCATAAAGACGGAAAGTGTCGGT 1255 |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct 661 CTTTGTTAGAAGAGGGCCTTGCAATGATCGACAACGGCCATAAAGACGGAAAGTGTCGAT 720 Query 1256 ACTGGTTTCCCTGTGTTTCTTCGGTTTACTCATCCATCGGATCTGATACTTAAA-TGGTA 1314 |||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| Sbjct 721 ACTGGTTTCCCTGTGTTTCTTCTGTTTACTCATACATCGGATCTGATACTTAACCTGGTA 780 Query 1315 CATGCTCAGTT 1325 ||||||| ||| Sbjct 781 CATGCTCTGTT 791 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55383216230 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5