BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27040.1
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945357 jgi|Araly1|945357|scaffold_701586.1 1249 0.0
> Ahg945357 jgi|Araly1|945357|scaffold_701586.1
Length=793
Score = 1249 bits (676), Expect = 0.0
Identities = 753/791 (95%), Gaps = 1/791 (0%)
Strand=Plus/Plus
Query 536 AGATCAGAAAACGGTGAAAGATGCGACGACGACCAGGAATTGGAGGATTACAAAAGGCCG 595
||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1 AGATCTGAAAACAGTGAAAGATGCGACGACGACCAGGAATCGGAGGATTGCAAAAGGCCG 60
Query 596 CAGCTGCTAGGGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATA 655
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 61 CAGCTGCCAGGGATCAGTACCGGTTACTGGGAGAAAATGTAGCCAAGTTACGTACTGATA 120
Query 656 TGATGAAAGAACAGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACA 715
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TGATGAAAGAACAGCTCGCAACGTTCCGGTCCCAGCTTGAAGAGTTCGCTCGTAAACACA 180
Query 716 AGAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGTGCTAACA 775
|||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||
Sbjct 181 AGAATGACATTCGTAAGAATCCAGCCTTCAGGGCTCAATTCCATGAAATGTGTTCTAACA 240
Query 776 TTGGTGTGGATCCTCTTGCTTCTAACAAGGGTTTCTGGGCTGAGCTCCTTGGTATTGGTG 835
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 241 TTGGTGTGGATCCTCTTGCTTCCAACAAAGGTTTCTGGGCTGAGCTCCTTGGAATTGGTG 300
Query 836 ACTTCTACTATGAACTTGGAGTTCAGATTATTGAAGTTTGCATGCTTACAAGATCACATA 895
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 301 ACTTCTACTATGAACTTGGAGTTCAGATTATTGAGGTTTGCATGCTTACAAGGTCACACA 360
Query 896 ATGGAGGTTTGATCAGCTTGCAAGAGCTCTGCAACCATCTTCGTCAGAGAAGGAAGAAAG 955
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 361 ATGGAGGTTTGATCAGCTTGCAAGAGCTCTGCAACCATCTTCGTCTGAGAAGGAAGAAGG 420
Query 956 ACCGTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGGTATTGG 1015
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 ATCGTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTTAAGGTATTGG 480
Query 1016 GTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCCGTTCAGTACCCACAG 1075
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 481 GTAGCGGATTTGAGGTTATCACAATTGGCAAGAAAAAGCTTGTCCGTTCTGTACCCACGG 540
Query 1076 AGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGGGCCAAGGCTTTGTGATTG 1135
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 541 AGCTGAACAAAGACCATAACCAGATCTTGGAGTTGGCTCAGGGCCAAGGCTTTGTGACTG 600
Query 1136 TGGAAGAGGTACAAAGACGCCTCTCATGGACATCTGGTCGCGTTATAGATGCTCTCGAAA 1195
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 TGGAAGAGGTACAAAGACGCCTCTCATGGACATCTGGTCGGGTTATAGATGCTCTCGAAA 660
Query 1196 CTTTGTTAGAGGAGGGCCTTGCCATGATCGACAATGGCCATAAAGACGGAAAGTGTCGGT 1255
|||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 661 CTTTGTTAGAAGAGGGCCTTGCAATGATCGACAACGGCCATAAAGACGGAAAGTGTCGAT 720
Query 1256 ACTGGTTTCCCTGTGTTTCTTCGGTTTACTCATCCATCGGATCTGATACTTAAA-TGGTA 1314
|||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct 721 ACTGGTTTCCCTGTGTTTCTTCTGTTTACTCATACATCGGATCTGATACTTAACCTGGTA 780
Query 1315 CATGCTCAGTT 1325
||||||| |||
Sbjct 781 CATGCTCTGTT 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55383216230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5